BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24110.1
Length=690
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479922 jgi|Araly1|479922|fgenesh2_kg.3__2623__AT3G24110.1 743 0.0
> Ahg479922 jgi|Araly1|479922|fgenesh2_kg.3__2623__AT3G24110.1
Length=654
Score = 743 bits (402), Expect = 0.0
Identities = 473/508 (93%), Gaps = 2/508 (0%)
Strand=Plus/Plus
Query 1 ATGCTTTGCTGCTGTGTTAACTCGGAGAACAACAAGAAGTATGCAGAGCTGGATGCGAAG 60
||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1 ATGCTTTGCTGTTGTGTTAACTCGGAGAACAACAGGAAGTATGCAGAGCTGGACGCGAAG 60
Query 61 CTTGCACGGAAAATGGTGGAGAGCCGGAGTATTTATCCGGGACACAGGAGTTTAAAGTCT 120
||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||
Sbjct 61 CTTGCACGGAAAATGGTGGAGAGCCGGAGGATTTATCCGGGACACCGGCGTTTAAAGTCC 120
Query 121 ATGGATTCAATAATCATGAAGTTTCCTAAGCTAAGAGAAGGATTAAGAAACATCAGAAGC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATGGATTCAATAATCATGAAGTTTCCTAAGCTAAGAGAAGGATTAAGAAACATCAGAAGC 180
Query 181 GTTTTCGAATCATACGATAATGATACAAACGGGACAATCGATATCGAGGAGCTGAAGAAA 240
||||||||||| | ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 181 GTTTTCGAATCCTTCGATAGTGATAAAAACGGGACAATCGATATCGAGGAGCTGAAGAAA 240
Query 241 TGTTTAGAGGAACTAAAGCTGA-GTTTATCGGATGAAGAAGTGAAAGGTTTATATAGTTG 299
|| |||||||||||||| || | |||| || || ||||||||||||||||||||| | ||
Sbjct 241 TGCTTAGAGGAACTAAACCT-ATGTTTGTCAGAGGAAGAAGTGAAAGGTTTATATGGATG 299
Query 300 GTGTGACGTTGATGGAAGCAAAGGGATACAATTCAATGAGTTTATAGTCCTTCTCTGTCT 359
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 GTGTGATGTTGATGGAAGCAAAGGGATACAATTCAATGAGTTTATAGTTCTTCTCTGTCT 359
Query 360 CATCTATCTTCTGGCGAAACCTTCCTCTGAATCCAGCACGGAATCGAGAGAGATGGGTCC 419
|||||||||||| | ||||||||||||||||||| ||||||||| | ||||||||||||
Sbjct 360 CATCTATCTTCTATCAAAACCTTCCTCTGAATCCAACACGGAATCAAAAGAGATGGGTCC 419
Query 420 AAAGTTGGTTGAGTCTATATTTGATCCAATAGTAGAAGTGTTCTTGTTTTTGGACAAAGA 479
|||||||||||| || ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 420 AAAGTTGGTTGAATCAATATTTGATCCGATAGTAGAAGTGTTCTTGTTTTTAGACAAAGA 479
Query 480 CGGTAAAGGGAAATTAAACAAGGCTGAT 507
|||||||| ||||||||||| ||||||
Sbjct 480 TGGTAAAGGAAAATTAAACAAAGCTGAT 507
Score = 217 bits (117), Expect = 1e-55
Identities = 131/137 (96%), Gaps = 3/137 (2%)
Strand=Plus/Plus
Query 554 CTTCACATGTCACCAACATGAGATTTGAAGAAATGGATTGGGGAAGAAAAGGGAAAGTGG 613
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 CTTCACATGTTACCAACATGAGATTTGAAGAAATGGATTGGGGAAGAAAAGGGAAAGTGG 580
Query 614 GTTTTAGAGAGTTTCTATTTGCTTTCATGAGTTGGGTTGGTCTTGATGATGCAGATGATG 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 581 GTTTTAGAGAGTTTCTATTTGCTTTCATGAGTTGGGTTGGTCTTGATGATGCAGA--A-G 637
Query 674 ATTTTATGAGCAGCTAA 690
||| ||||| |||||||
Sbjct 638 ATTATATGACCAGCTAA 654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25351739805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5