BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24120.2
Length=1353
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319110 jgi|Araly1|319110|fgenesh1_pm.C_scaffold_3002126 1380 0.0
Ahg930513 jgi|Araly1|930513|scaffold_302970.1 331 7e-90
Ahg888000 jgi|Araly1|888000|Al_scaffold_0133_2 132 8e-30
> Ahg319110 jgi|Araly1|319110|fgenesh1_pm.C_scaffold_3002126
Length=897
Score = 1380 bits (747), Expect = 0.0
Identities = 848/898 (94%), Gaps = 2/898 (0%)
Strand=Plus/Plus
Query 168 ATGTACTCAGCGATTCGCTCGCTTCCACTCGATGGTGGACACGTTGGTGGTGACTACCAT 227
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1 ATGTACTCAGCGATTCGCTCGCTTCCACTCGATGGTGGACACGCCGCCGGTGACTACCAT 60
Query 228 GGACCTCTTGACGGAACCAATCTTCCCGGTGACGCTTGTTTGGTTTTAACGACTGACCCT 287
||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||
Sbjct 61 GGACCTCTTGACGGAACTAATCTTCCCGGCGACGCTTGTTTGGTTTTAACCACTGACCCT 120
Query 288 AAACCTCGTCTCCGGTGGACAACTGAGCTTCATGAGAGATTCGTTGACGCCGTTACTCAG 347
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 121 AAACCTCGTCTCCGGTGGACAACTGAGCTCCATGAGAGATTCGTTGACGCTGTTACCCAG 180
Query 348 CTCGGTGGTCCTGACAAAGCGACTCCCAAAACTATTATGAGAACAATGGGAGTGAAGGGT 407
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 181 CTCGGTGGTCCTGACAAAGCGACGCCCAAAACTATCATGAGAACAATGGGAGTGAAGGGT 240
Query 408 CTCACTCTCTACCACCTCAAATCACATCTTCAGAAATTCCGCCTAGGGAGGCAAGCTGGC 467
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 241 CTCACTCTCTACCACCTCAAATCACATCTTCAGAAATTCCGACTAGGGAGACAAGCTGGC 300
Query 468 AAAGAATCAACTGAGAACTCTAAAGATGCTTCTTGTGTAGGGGAGAGTCAGGACACAGGT 527
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 301 AAAGAATCAACTGAGAACTCTAAGGATGCTTCTTGTGTTGGGGAGAGTCAGGACACAGGT 360
Query 528 TCATCTTCGACATCATCAATGAGAATGGCGCAGCAGGAGCAGAACGAGGGTTACCAAGTC 587
|||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 361 TCATCTTCAACATCATCATTGAGAATGGTGCAGCAGGAGCAGAACGAGGGTTACCAAGTC 420
Query 588 ACCGAAGCTCTACGTGCTCAGATGGAAGTCCAAAGAAGACTACACGATCAATTGGAGTAT 647
|| |||||||||||||||||||||||||||||||||| |||||| || ||||||||| ||
Sbjct 421 ACTGAAGCTCTACGTGCTCAGATGGAAGTCCAAAGAAAACTACATGAGCAATTGGAGCAT 480
Query 648 GGGCAGGTGCAACGGAGGCTCCAGCTGAGGATAGAGGCACAAGGAAAATACCTGCAATCG 707
||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 481 GGGCAGGTGCAACGGAGACTCCAGCTAAGGATAGAGGCACAAGGAAAGTACCTTCAATCG 540
Query 708 ATTCTTGAAAAAGCTTGCAAGGCCTTTGACGAGCAAGCTGCTACTTTTGCTGGACTTGAG 767
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 541 ATTCTTGAAAAAGCTTGCAAGGCCTTTGACGAGCAAGCTGCTGCTTTTGCTGGGCTTGAG 600
Query 768 GCTGCTAGGGAAGAGCTATCAGAGCTAGCCATCAAAGTCTCCAATAGCTCTCAAGGAACA 827
|||||||| |||||||| ||||| ||||| ||||| ||||| ||||||||||||||||||
Sbjct 601 GCTGCTAGAGAAGAGCTTTCAGATCTAGCTATCAAGGTCTCTAATAGCTCTCAAGGAACA 660
Query 828 TCAGTCCCGTACTTCGATGCAACAAAGATGATGATGATGCCATCGTTGTCAGAGCTTGCA 887
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 661 ACAGTCCCGTACTTCGATGCAACAAAGATGATGATGATGCCATCTTTGTCCGAGCTTGCA 720
Query 888 GTAGCAATAGACAACAAAAACAACATCACAACCAACTGTTCAGTAGAAAGCTCTCTGACT 947
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 721 GTAGCAATAGACAACAAAAACAACATCACAACCAACTGTTCAGTAGAAAGCTCTCTAACT 780
Query 948 TCCATCAC-ACATGGGAGCTCTATATCTGCTGCATCAATGAAGAAGCGTCAACGTGGAGA 1006
|||||||| | |||||||||| |||||||||||||| ||||||||||| |||||||| ||
Sbjct 781 TCCATCACTA-ATGGGAGCTCGATATCTGCTGCATCGATGAAGAAGCGGCAACGTGGTGA 839
Query 1007 CAATTTGGGCGTAGGGTATGAATCAGGCTGGATTATGCCTAGTAGCACCATTGGATAA 1064
|||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 840 CAATTTGGGCGTCGGGTATGAATCGGGATGGATTATGCCTAGTAGTACCATTGGATAA 897
> Ahg930513 jgi|Araly1|930513|scaffold_302970.1
Length=392
Score = 331 bits (179), Expect = 7e-90
Identities = 309/364 (85%), Gaps = 39/364 (11%)
Strand=Plus/Plus
Query 575 GGGTTACCAAGTCAC-CGAAGCTCTACGTGCTCAGATGGAAGTCCAAAGAAGACTACACG 633
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 56 GGGTTACCAAGTCACTGGAAGCTCTACGTGCTCAGATGGAAGTCCAAAGAAGACTACACG 115
Query 634 ATCAATTGGAGTATGGGCAGGTGCAACGGAGGCTCCAGCTGAGGATAGAGGCACAAGGAA 693
| ||||||||| | |||||||||| |||||||| |||||||||||||||| ||
Sbjct 116 AGCAATTGGAG---G------TGCAACGGAGACTCCAGCTAAGGATAGAGGCACAAG-AA 165
Query 694 AA-TACCTGCAATCGATTCTTGAAAAAGCTTGCAAGGCCTTTGACGAGCAAGCTGCTACT 752
|| ||||||||||| ||||||||||||||||||||| | | | | |||| |
Sbjct 166 AAGTACCTGCAATCAATTCTTGAAAAAGCTTGCAAG-C-T--G-C--------TGCT--T 210
Query 753 TTTGCTGGACTTGAGGCTGCTAGGGAAGAGCTATCAGAGC--T-A-GC-C-ATC-AAAGT 805
|| |||| ||||||||||||||| ||||||||||||||| | | | | || ||| |
Sbjct 211 TTA-CTGGGCTTGAGGCTGCTAGG-AAGAGCTATCAGAGCACTTACGGACTATTTAAAAT 268
Query 806 -CTCCAATAGCTCTCAAGGAACATCAGTCCCGTACTTC-GATGCAACAAAGATGATGATG 863
|| ||||||||||||||||||| |||||||||||||| ||||||| ||| |||||||||
Sbjct 269 TCTTCAATAGCTCTCAAGGAACAACAGTCCCGTACTTCCGATGCAATAAAAATGATGATG 328
Query 864 ATGCCATCGTTGTCAGAGCTTGCAGTAGCAATAGACAACAA-AAACAACATCACAACCAA 922
|||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 329 ATGCCATCTTTGTCAGAGCTTGCAGTAGCAGTAGACAACAATAAACAACATCACAACCAA 388
Query 923 CTGT 926
||||
Sbjct 389 CTGT 392
> Ahg888000 jgi|Araly1|888000|Al_scaffold_0133_2
Length=303
Score = 132 bits (71), Expect = 8e-30
Identities = 107/122 (88%), Gaps = 11/122 (9%)
Strand=Plus/Plus
Query 575 GGGTTACCAAGTCAC-CGAAGCTCTACGTGCTCAGATGGAAGTCCAAAGAAGACTACACG 633
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 51 GGGTTACCAAGTCACTGGAAGCTCTACGTGCTCAGATGGAAGTCCAAAGAAGACTACACG 110
Query 634 ATCAATTGGAGTATGGGCAGGTGCAACGGAGGCTCCAGCTGAGGATAGAGGCACAAGGAA 693
| ||||||||| ||| || | ||||| |||||||| |||||||||||||||| ||
Sbjct 111 AGCAATTGGAG-ATG--CA-----A-CGGAGACTCCAGCTAAGGATAGAGGCACAAG-AA 160
Query 694 AA 695
||
Sbjct 161 AA 162
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50627233776
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5