BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24130.1
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905490 jgi|Araly1|905490|Al_scaffold_0003_2618 1618 0.0
Ahg893817 jgi|Araly1|893817|Al_scaffold_0006_1813 1223 0.0
> Ahg905490 jgi|Araly1|905490|Al_scaffold_0003_2618
Length=1008
Score = 1618 bits (876), Expect = 0.0
Identities = 965/1009 (96%), Gaps = 2/1009 (0%)
Strand=Plus/Plus
Query 64 ATGGGAACTCATCGAATTTTCATAGGTCTCATCGCTCTTTGTTGTTTTTGTCTACCTCAC 123
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1 ATGGGAACTCATCGAATTTTCATAGGTCTTATCGCTCTTTGTTGTTTTTGTTTACCTCAT 60
Query 124 CTCATTGAAGCTAAGCCATTCGGAGTATACCAACAACAAGTATTTGTTGATCAATCCGGC 183
|||||||||||||| |||||||||||||||||||||||||| || || |||||||| |||
Sbjct 61 CTCATTGAAGCTAAACCATTCGGAGTATACCAACAACAAGTGTTCGTGGATCAATCGGGC 120
Query 184 CATGGAAATTTCACGACAATACAAAAAGCTATTGATTCTGTTCCAATCAACAATCGTCAT 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CATGGAAATTTCACGACAATACAAAAAGCTATTGATTCTGTTCCAATCAACAATCGTCAT 180
Query 244 TGGTTCTTCATCAACGTTAAAGCCGGTCTTTACAGAGAGAAAATAAAGATACCGTATGAA 303
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 181 TGGTTCTTCATCAACGTTAAAGCTGGCCTTTACAGAGAGAAAATAAAGATACCGTATGAA 240
Query 304 AAACCGTTCATAGTACTAGTAGGAGCTGGAAAAAGGTTAACGAGAGTTGAATGGGACGAC 363
||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||
Sbjct 241 AAACCGTTCATAGTATTAGTAGGAGCTGGGAAGAGGTTAACGAGAGTTGAATGGGACGAC 300
Query 364 CATTACTCGGTTGCACAAAGCCCTACCTTTTCTACTCTTGCCGATAACACCGTTGTTAAA 423
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 301 CATTACTCGGTTGCACAAAGCCCTACCTTTTCTACTCTAGCCGATAACACCGTCGTTAAA 360
Query 424 AGCATCACTTTCGCCAATTCCTATAA-TTTCCCTAGCAAAGGGAAAATGAACAAGAACCC 482
|||||||||||||||||||| || || ||||| |||||||||||||||||||||||||||
Sbjct 361 AGCATCACTTTCGCCAATTCATACAACTTTCC-TAGCAAAGGGAAAATGAACAAGAACCC 419
Query 483 TAGAACTCCAGCCGTGGCAGCGTTGATAGGCGGCGATAAGTCGGCTTTTTACTCGGTAGG 542
||||||||||||||| || ||||||||||| ||||||||||| ||||| ||||| |||||
Sbjct 420 TAGAACTCCAGCCGTAGCCGCGTTGATAGGTGGCGATAAGTCAGCTTTCTACTCTGTAGG 479
Query 543 GTTTGCTGGAATTCAAGATACCTTGTGGGACTTTGATGGCCGGCACTACTTCCACCGGTG 602
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 480 GTTTGCTGGAATTCAAGATACCTTGTGGGACTCGGATGGTAGGCACTACTTCCACCGGTG 539
Query 603 TACCATACAAGGCGCGGTCGATTTCATCTTTGGTACCGGTCAATCTATTTACCAGAGCTG 662
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||
Sbjct 540 TACCATACAAGGCGCGGTCGATTTCATCTTTGGTAGCGGCCAATCTATTTACCAGAGTTG 599
Query 663 TGTGATACAAGTGCTAGGTGGGCAGCTAGAACCGGGGCTAGCCGGTTACATAACGGCTCA 722
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 600 TGTGATACAAGTGCTAGGTGGGCAGCTAGAACCGGGGCTAGCGGGTTACATAACGGCTCA 659
Query 723 AGGACGGACCAACCCGTACGATGCAAATGGATTCATCTTCATCAACTGCCTCGTATATGG 782
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 660 AGGACGGACCAACCCGTACGATGCAAATGGATTCATCTTCATCAACTGCCTTGTATATGG 719
Query 783 AACAGGCATGGCCTTCTTGGGCAGGCCGTGGCGCGGTTATTCTCGAGTGATCTTTTACAA 842
||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 720 AACGGGCATGGCCTTCTTGGGCAGGCCGTGGCGCGGTTACTCTCGAGTGATTTTTTACAA 779
Query 843 CTCGAACCTGACCGATGTAGTTGTTCCTGAAGGATGGGATGCATGGAATTTCGTGGGCCA 902
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 780 CTCGAACCTGACCGATGTAGTTGTTCCTGAAGGATGGGACGCATGGAACTTCGTGGGCCA 839
Query 903 CGAAAACCAGCTGGTCTTTGCAGAACATGGATGCTTTGGAAGTGGAGCAAATATAGGAAG 962
||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 840 CGAAAACCAGCTGATCTTTGCAGAACATGGATGCTTTGGAAGTGGAGCAACTACAGGAAG 899
Query 963 ACGTGTGAAGTGGGTTAAGAAGCTTAGTGAATCTGCCATTCAAAATTTGGCTGATCTCAG 1022
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 900 ACGTGTGAAGTGGGTTAAGAAGCTTAGTGGATCTGCCATTCAAAATTTGGCTGATCTCAG 959
Query 1023 CTTTATTAATCGTGGTGGATGGGTTGAAGATTTGCCCATCCCTGCTTGA 1071
||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 960 CTTTATTAATCGTGGTGGATGGGTTGAAGATTTACCCATCCCTGCTTGA 1008
> Ahg893817 jgi|Araly1|893817|Al_scaffold_0006_1813
Length=1011
Score = 1223 bits (662), Expect = 0.0
Identities = 900/1014 (89%), Gaps = 19/1014 (2%)
Strand=Plus/Plus
Query 64 ATGGGAACTCATCGAATTTTCATAGGTCTCATCGCTCTTTGTTGTTTTTGTCTACCTCAC 123
|||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||
Sbjct 1 ATGGGAACTCATCGAATTATCATTGGTCTCGTCGCTCTTTGTTGTTTTTGTCTACCTCAT 60
Query 124 CTCATTGAAGCTAAGCCATTCGGAGTATACCAACAACAAGTATTTGTTGATCAATCCGGC 183
||||| |||||||| ||||||||||| ||||||| |||||| || || |||||||| |||
Sbjct 61 CTCATCGAAGCTAAACCATTCGGAGTGTACCAACGACAAGTGTTCGTGGATCAATCGGGC 120
Query 184 CATGGAAATTTCACGACAATACAAAAAGCTATTGATTCTGTTCCAATCAACAAT-CGTCA 242
||||||||||||| ||| |||||||||||||||||||| || |||||||||||| | |||
Sbjct 121 CATGGAAATTTCAGGACCATACAAAAAGCTATTGATTCGGTCCCAATCAACAATAC-TCA 179
Query 243 TTGGTTCTTCATCAACGTTAAAGCCGGTCTTTACAGAGAGAAAATAAAGATACCGTATGA 302
||||||||||||||||||||||||||| |||||||||||||||||| ||||||| | |
Sbjct 180 TTGGTTCTTCATCAACGTTAAAGCCGGCCTTTACAGAGAGAAAATAGTGATACCGCAAAA 239
Query 303 AAAACCGTTCATAGTACTAGTAGGAGCTGGAAAAAGGTTAACGAGAGTTGAATGGGACGA 362
|||||||||||||||| | || |||||||| ||||||||||||||||| |||||||||||
Sbjct 240 AAAACCGTTCATAGTAATCGTGGGAGCTGGGAAAAGGTTAACGAGAGTAGAATGGGACGA 299
Query 363 CCATTACTCGGTTGCACAAAGCCCTACCTTTTCTACTCTTGCCGATAACACCGTTGTTAA 422
|||| ||||| |||||||||||||||||||| ||||||| || ||||||||||| |||||
Sbjct 300 CCATGACTCGCTTGCACAAAGCCCTACCTTTGCTACTCTCGCTGATAACACCGTCGTTAA 359
Query 423 AAGCATCACTTTCGCCAATTCCTATAATTTCCCTAGCAAAGGGAAAATGAACAAGAACCC 482
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 360 AAGCATCACTTTCGCCAATTCCTACAACTTCCCTAGCAAAGGGAAAATGAACAAGAACCC 419
Query 483 TAGAACTCCAGCCGTGGCAGCGTTGATAGGCGGCGATAAGTCGGCTTTTTACTCGGTAGG 542
|||| ||| |||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 420 TAGAGTTCCGGCCGTGGCAGCGTTTATCGGCGGTGATAAGTCGGCTTTTTACTCGGTAGG 479
Query 543 GTTTGCTGGAATTCAAGATACCTTGTGGGACTTTGATGGCCGGCACTACTTCCACCGGTG 602
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||
Sbjct 480 ATTTGCTGGAATTCAAGATACCTTGTGGGACTCTGATGGCCGACACTACTTCCACCGATG 539
Query 603 TACCATACAAGGCGCGGTCGATTTCATCTTTGGTACCGGTCAATCTATTTACCAGAGCTG 662
||||| ||||||||||| ||||||||||| || ||| ||||||||||||||||||||
Sbjct 540 CACCATCCAAGGCGCGGTTGATTTCATCTTGGGGGGCGGCCAATCTATTTACCAGAGCTG 599
Query 663 TGTGATACAAGTGCTAGGTGGGCAGCTAGAACCGG--GG--CTAGCCGGTTACATAACGG 718
||||||||||||||||||||||||||||||||||| || | || |||||||||||||
Sbjct 600 TGTGATACAAGTGCTAGGTGGGCAGCTAGAACCGGCCGGGAC-AGAGGGTTACATAACGG 658
Query 719 CTCAAGGACGGACCAACCCGTACGATGCAAATGGATTCATCTTCATCAACTGCCTCGTAT 778
|||||||||||| |||||| ||||| || ||||||||| | ||||||||||||||||| |
Sbjct 659 CTCAAGGACGGAACAACCCCTACGACGCGAATGGATTCGTATTCATCAACTGCCTCGTTT 718
Query 779 ATGGAACAGGCATGGCCTTCTTGGGCAG-GCCGTGGCG-CGGTTATTCTCGAGTGATCTT 836
||||||| |||| ||||| ||||||||| ||| ||||| | ||| |||||||| || ||
Sbjct 719 ATGGAACCGGCAAGGCCTACTTGGGCAGAGCC-TGGCGGCC-TTACTCTCGAGTTATTTT 776
Query 837 TTACAACTCGAACCTGACCGATGTAGTTGTTCCT-GAAGGATGG-GATGCATGGAATTTC 894
|||||||||||||||||| ||||| ||||||||| || |||||| | | ||||||
Sbjct 777 TTACAACTCGAACCTGACGGATGTGGTTGTTCCTCGA-GGATGGTGG-GAATGGAACCAA 834
Query 895 GTGGGCCACGAAAACCAGCTGGTCTTTGCAGAACATGGATGCTTTGGAAGTGGAGCAAAT 954
|||| ||||||| |||||| |||||||||||||||||||||| ||||||||| |||||
Sbjct 835 ACGGGCTACGAAAAACAGCTGATCTTTGCAGAACATGGATGCTTCGGAAGTGGATCAAAT 894
Query 955 ATAGGAAGACGTGTGAAGTGGGTTAAGAAGCTTAGTGAATCTGCCATTCAA-AATTTGGC 1013
| ||||| |||||||||||||||||||||||| |||| ||||||| | ||| |||| | |
Sbjct 895 ACAGGAAAACGTGTGAAGTGGGTTAAGAAGCTGAGTGGATCTGCCGTCCAACAATT-GAC 953
Query 1014 TGATCTCAGCTTTATTAATCGTGGTGGATGGGTTGAAGA-TTTGCCCATCCCTG 1066
|||||| ||||| |||||||||||||||||| |||| || ||| ||||||||||
Sbjct 954 TGATCTTAGCTTCATTAATCGTGGTGGATGGCTTGA-GAATTTACCCATCCCTG 1006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39876571182
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5