BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24140.1
Length=1729
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930468 jgi|Araly1|930468|scaffold_302925.1 2013 0.0
Ahg930408 jgi|Araly1|930408|scaffold_302865.1 717 0.0
Ahg342622 jgi|Araly1|342622|fgenesh1_pg.C_scaffold_3002385 667 0.0
> Ahg930468 jgi|Araly1|930468|scaffold_302925.1
Length=1243
Score = 2013 bits (1090), Expect = 0.0
Identities = 1181/1225 (96%), Gaps = 6/1225 (0%)
Strand=Plus/Plus
Query 176 ATCAACTACCACGAATAGCAATGGATAAAGATTACTCGGCACCAAACTTCTTAGGTGAAT 235
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCAATTAGCACGAATAGCAATGGATAAAGATTACTCGGCACCAAACTTCTTAGGTGAAT 60
Query 236 CCTCAGGCGGTAACGATGATAACAGCTCTGGTATGATAGACTATATGTTCAATAGAAACC 295
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 CCTCAGGCGGAAACGATGATAACAGCTCCGGTATGATAGACTATATGTTCAATAGAAACC 120
Query 296 TTCAACAACAACAAAAGCAATCGATGCCACAACAGCAGCAACATCAACTCTCTCCTTCCG 355
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 121 TTCAACAACAACAAAAGCAATCGATGCCACAACAGCAGCATCATCAACTGTCTCCTTCCG 180
Query 356 GATTTGGAGCAACACCTTTTGATAAAATGAACTTCTCTGATGTGATGCAGTTTGCGGACT 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GATTTGGAGCAACACCTTTTGATAAAATGAACTTCTCTGATGTGATGCAGTTTGCGGACT 240
Query 416 TCGGTTCGAAACTTGCGTTGAACCAGACCAGAAACCAAGACGATCAAGAAACCGGGATTG 475
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCGGTCCGAAACTGGCGTTGAACCAGACCAGAAACCAAGACGATCAAGAAACCGGGATTG 300
Query 476 ACCCCGTTTATTTCTTGAAGTTCCCTGTCTTGAACGACAAAATAGAGGACCATAACCAAA 535
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 301 ACCCGGTTTATTTCTTGAAGTTCCCTGTCTTGAACGACAAGATAGAGGACCATAACCAAA 360
Query 536 CCCAACATCTCATGCCTTCTCATCAGACGTCTCAAGAAGGAGGTGAGTGTGGAGGAAACA 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCCAACATCTCATGCCTTCTCATCAGACGTCTCAAGAAGGAGGTGAGTGTGGAGGAAACA 420
Query 596 TAGGCAATGTGTTTCTTGAAGAAAAAGAAGATCAAGACGATGACAACGACAACAACTCCG 655
||||||| |||||||||||||||||||| ||||||||| | |||||||||||||||
Sbjct 421 TAGGCAACGTGTTTCTTGAAGAAAAAGAGGATCAAGAC---G---ACGACAACAACTCCG 474
Query 656 TGCAACTACGTTTTATTGGAGGagaagaagaagatagggagaacaagaatgttacgaaaa 715
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 475 TGCAACTCCGTTTTATTGGAGGAGAAGAAGAAGATAGGGAGAACAAGAATGTTACGACAA 534
Query 716 aggaggtgaagagcaagaggaagagaGCTAGAACGAGCAAGACCAGCGAAGAAGTGGAAA 775
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 535 AGGAGGTGAAGAGCAAGAGGAAGAGAGCTAGAACGAGCAAAACTAGCGAAGAAGTGGAAA 594
Query 776 GCCAACGGATGACTCATATCGCGGTCGAAAGAAACCGTAGGAAGCAAATGAATGAGCATC 835
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 595 GCCAAAGGATGACTCATATCGCGGTCGAAAGGAACCGTAGGAAGCAAATGAATGAGCATC 654
Query 836 TTCGTGTCCTTAGATCTCTCATGCCTGGCTCCTACGTTCAAAGGGGAGACCAAGCGTCAA 895
||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 655 TTCGTGTTCTAAGATCTCTCATGCCTGGCTCCTACGTTCAAAGAGGAGACCAAGCGTCGA 714
Query 896 TCATAGGAGGAGCAATAGAGTTTGTGAGAGAGCTCGAGCAACTCCTACAATGTCTTGAAT 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 715 TCATAGGAGGAGCAATAGAGTTTGTGAGAGAGCTCGAGCAACTCCTACAATGTCTAGAAT 774
Query 956 CACAGAAGCGTCGAAGAATCTTAGGAGAAACCGGTAGGGACATGACAACGACAACGACTT 1015
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 775 CACAGAAGCGTCGAAGAATCCTAGGAGAAACCGGTAGGGACATGACCACGACAACGACTT 834
Query 1016 CTTCTTCTTCTCCCATAACTACGGTAGCGAACCAAGCACAACCGCTCATTATTACGGGAA 1075
|||||||||||||||||||| ||||||| |||||| ||||||||||||||||||| || |
Sbjct 835 CTTCTTCTTCTCCCATAACTGCGGTAGCTAACCAAACACAACCGCTCATTATTACTGGTA 894
Query 1076 ATGTAACCGAGCTAGAGGGCGGAGGAGGGCTTCGGGAGGAGACTGCGGAGAACAAGTCGT 1135
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 895 ATGTAACCGAACTAGAGGGCGGAGGAGGGCTTCGGGAGGAGACCGCGGAGAACAAGTCGT 954
Query 1136 GCTTGGCTGACGTGGAGGTGAAGCTGCTAGGGTTTGACGCCATGATCAAGATACTTTCAA 1195
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 955 GCTTGGCTGACGTGGAGGTGAAGCTGCTAGGGTTTGATGCCATGATCAAGATACTTTCAA 1014
Query 1196 GAAGAAGGCCGGGACAGCTGATTAAGACTATAGCTGCTTTGGAGGATCTTCATCTCTCTA 1255
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 GAAGAAGGCCAGGACAATTGATTAAGACTATAGCTGCTTTGGAGGATCTTCATCTCTCTA 1074
Query 1256 TTCTTCACACTAACATCACTACCATGGAACAAACCGTCCTCTACTCCTTTAATGTCAAGA 1315
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1075 TTCTTCACACTAACATCACTACCATGGAACAAACCGTCCTCTACTCCTTTAACGTCAAGA 1134
Query 1316 TAACAAGTGAAACGAGGTTTACGGCAGAAGACATAGCAAGTTCCATCCAACAGATATTTA 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 TAACAAGTGAAACGAGGTTTACGGCAGAAGACATAGCAAGTTCCATCCAACAGATATTTA 1194
Query 1376 GTTTCATTCATGCAAATACCAACAT 1400
|||||||||| ||||||||||||||
Sbjct 1195 GTTTCATTCACGCAAATACCAACAT 1219
> Ahg930408 jgi|Araly1|930408|scaffold_302865.1
Length=921
Score = 717 bits (388), Expect = 0.0
Identities = 420/436 (96%), Gaps = 0/436 (0%)
Strand=Plus/Plus
Query 879 GGGAGACCAAGCGTCAATCATAGGAGGAGCAATAGAGTTTGTGAGAGAGCTCGAGCAACT 938
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 GGGAGACCAAGCGTCGATCATAGGAGGAGCAATAGAGTTTGTGAGAGAGCTCGAGCAACT 507
Query 939 CCTACAATGTCTTGAATCACAGAAGCGTCGAAGAATCTTAGGAGAAACCGGTAGGGACAT 998
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 508 CCTACAATGTCTAGAATCACAGAAGCGTCGAAGAATCCTAGGAGAAACCGGTAGGGACAT 567
Query 999 GACAACGACAACGACTTCTTCTTCTTCTCCCATAACTACGGTAGCGAACCAAGCACAACC 1058
||| ||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||
Sbjct 568 GACCACGACAACGACTTCTTCTTCTTCTCCCATAACTGCGGTAGCTAACCAAACACAACC 627
Query 1059 GCTCATTATTACGGGAAATGTAACCGAGCTAGAGGGCGGAGGAGGGCTTCGGGAGGAGAC 1118
|||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 628 GCTCATTATTACTGGTAATGTAACCGAACTAGAGGGCGGAGGAGGGCTTCGGGAGGAGAC 687
Query 1119 TGCGGAGAACAAGTCGTGCTTGGCTGACGTGGAGGTGAAGCTGCTAGGGTTTGACGCCAT 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 688 CGCGGAGAACAAGTCGTGCTTGGCTGACGTGGAGGTGAAGCTGCTAGGGTTTGATGCCAT 747
Query 1179 GATCAAGATACTTTCAAGAAGAAGGCCGGGACAGCTGATTAAGACTATAGCTGCTTTGGA 1238
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 748 GATCAAGATACTTTCAAGAAGAAGGCCAGGACAATTGATTAAGACTATAGCTGCTTTGGA 807
Query 1239 GGATCTTCATCTCTCTATTCTTCACACTAACATCACTACCATGGAACAAACCGTCCTCTA 1298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 GGATCTTCATCTCTCTATTCTTCACACTAACATCACTACCATGGAACAAACCGTCCTCTA 867
Query 1299 CTCCTTTAATGTCAAG 1314
||| ||||||||||||
Sbjct 868 CTCATTTAATGTCAAG 883
Score = 448 bits (242), Expect = 9e-125
Identities = 256/263 (97%), Gaps = 0/263 (0%)
Strand=Plus/Plus
Query 1052 CACAACCGCTCATTATTACGGGAAATGTAACCGAGCTAGAGGGCGGAGGAGGGCTTCGGG 1111
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 186 CACAACCGCTCATTATTACTGGAAATGTAACCGAACTAGAGGGCGGAGGAGGGCTTCGGG 245
Query 1112 AGGAGACTGCGGAGAACAAGTCGTGCTTGGCTGACGTGGAGGTGAAGCTGCTAGGGTTTG 1171
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 AGGAGACCGCGGAGAACAAGTCGTGCTTGGCTGACGTGGAGGTGAAGCTGCTAGGGTTTG 305
Query 1172 ACGCCATGATCAAGATACTTTCAAGAAGAAGGCCGGGACAGCTGATTAAGACTATAGCTG 1231
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 306 ACGCCATGATCAAGATACTTTCAAGAAGAAGGCCAGGACAATTGATTAAGACTATAGCTG 365
Query 1232 CTTTGGAGGATCTTCATCTCTCTATTCTTCACACTAACATCACTACCATGGAACAAACCG 1291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 CTTTGGAGGATCTTCATCTCTCTATTCTTCACACTAACATCACTACCATGGAACAAACCG 425
Query 1292 TCCTCTACTCCTTTAATGTCAAG 1314
|||||||||| ||||||||||||
Sbjct 426 TCCTCTACTCATTTAATGTCAAG 448
> Ahg342622 jgi|Araly1|342622|fgenesh1_pg.C_scaffold_3002385
Length=588
Score = 667 bits (361), Expect = 0.0
Identities = 396/412 (96%), Gaps = 6/412 (1%)
Strand=Plus/Plus
Query 338 ATCAACTCTCTCCTTCCGGATTTGGAGCAACACCTTTTGATAAAATGAACTTCTCTGATG 397
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 ATCAACTGTCTCCTTCCGGATTTGGAGCAACACCTTTTGATAAAATGAACTTCTCTGATG 187
Query 398 TGATGCAGTTTGCGGACTTCGGTTCGAAACTTGCGTTGAACCAGACCAGAAACCAAGACG 457
|||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 188 TGATGCAGTTTGTGGACTTCGGTCCGAAACTGGCGTTGAACCAGACCAGAAACCAAGACG 247
Query 458 ATCAAGAAACCGGGATTGACCCCGTTTATTTCTTGAAGTTCCCTGTCTTGAACGACAAAA 517
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 248 ATCAAGAAACCGGGATTGACCCGGTTTATTTCTTGAAGTTCCCTGTCTTGAACGACAAGA 307
Query 518 TAGAGGACCATAACCAAACCCAACATCTCATGCCTTCTCATCAGACGTCTCAAGAAGGAG 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 TAGAGGACCATAACCAAACCCAACATCTCATGCCTTCTCATCAGACGTCTCAAGAAGGAG 367
Query 578 GTGAGTGTGGAGGAAACATAGGCAATGTGTTTCTTGAAGAAAAAGAAGATCAAGACGATG 637
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 368 GTGAGTGTGGAGGAAACATAGGCAACGTGTTTCTTGAAGAAAAAGAGGATCAAGACGA-- 425
Query 638 ACAACGACAACAACTCCGTGCAACTACGTTTTATTGGAGGagaagaagaagatagggaga 697
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 426 -C---GACAACAACTCCGTGCAACTCCGTTTTATTGGAGGAGAAGAAGAAGATAGGGAGA 481
Query 698 acaagaatgttacgaaaaaggaggtgaagagcaagaggaagagaGCTAGAAC 749
||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 482 ACAAGAATGTTACGACAAAGGAGGTGAAGAGCAAGAGGAAGAGAGCTAGAAC 533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64867687235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5