BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24150.1
Length=1472
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479917 jgi|Araly1|479917|fgenesh2_kg.3__2618__AT3G24150.1 1764 0.0
> Ahg479917 jgi|Araly1|479917|fgenesh2_kg.3__2618__AT3G24150.1
Length=1438
Score = 1764 bits (955), Expect = 0.0
Identities = 1172/1271 (92%), Gaps = 38/1271 (3%)
Strand=Plus/Plus
Query 233 TAGAAATTGAACCGATTAGTTTGATGAGTGAGTGACTTGTTACTTCGA-TTTGTAGCTGA 291
|||||||||||||||||||||||||||| |||||||| ||| |||||| |||||||||||
Sbjct 172 TAGAAATTGAACCGATTAGTTTGATGAGCGAGTGACTCGTTGCTTCGATTTTGTAGCTGA 231
Query 292 GTGTGTCACT-GCTCA-AGTGTG-TGAAGAA------G--GAG-AAAATGCCGAGGCCAG 339
|||||||||| | | | || || |||||| | ||| |||||||||||||| |
Sbjct 232 GTGTGTCACTGGTTTAGCGTCTGAGGAAGAAGTGTGTGAAGAGAAAAATGCCGAGGCCTG 291
Query 340 GACCAAGACCTTACGAGTGTGTGAAACGAGCTTGGCATAGCGATCGTCATCAACCTATTC 399
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 292 GACCTAGACCTTACGAGTGTGTGAAACGAGTTTGGCATAGCGATCGTCATCAACCTATTC 351
Query 400 GTGGTTCGATTATTCGCCAGATTTTCAGACTCGCAATGGAAGCACATAGCGCAGCGACGA 459
||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 352 GTGGTTCAATTATTCGCCAGATTTTCAGACTCGCCATGGAAGCACATAGCGCTGCGACGA 411
Query 460 GGAAGAACAAAGAATGGCAGGAGAAATTGCCTGTGGTTGTGTTAAAAGCTGAAGAAATCA 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 GGAAGAACAAAGAATGGCAGGAGAAATTGCCTGTGGTTGTGTTAAAAGCTGAAGAAATCA 471
Query 520 TGTACTCTAAAGCCAATTCCGAGGAAGAGTATACAGATGCTGATACTATGTGGAATAGAG 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 TGTACTCTAAAGCCAATTCCGAGGAAGAGTATACAGATGCTGATACTATGTGGAATAGAG 531
Query 580 TAAATGATGCCATTGATACAATTATTA-GAAGAGATGAGAGTACAGAAACTGGTCCTCTT 638
|||||||||||||||||||| |||||| || |||||||||| |||||||||||||||||
Sbjct 532 TAAATGATGCCATTGATACAGTTATTAAGA-GAGATGAGAGCACAGAAACTGGTCCTCTG 590
Query 639 TTGCCTCCATGTGTTGAAGCTGCTCTTAATTTGGGATGTATTGCTGTAAGAGCTTCAAGA 698
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 TTACCTCCTTGTGTTGAAGCTGCTCTTAATTTGGGATGTATTGCTGTAAGAGCTTCAAGA 650
Query 699 AGCCAACGACATAGTAGCGGAAGGACTTACCTCGGTCCTAAAATTC-AGGAACCGGTTTC 757
||||||||||||||||| | ||||||||| |||||||| |||| || |||||||||||||
Sbjct 651 AGCCAACGACATAGTAGTGTAAGGACTTATCTCGGTCC-AAAACTCCAGGAACCGGTTTC 709
Query 758 TGCGTCGACTAATGAGCCGTCT-TACCATCATGAATATCGTCAGCAAGCTCAACAATCAT 816
|||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||
Sbjct 710 TGCGTCGACTAATGAGCCA-CTGTACCATCATGAATATCATCAGCAAGCTCAACAATCAT 768
Query 817 CAACCAAACCAAGCCAGACAGTTCAAGCTGCAGTCCCTGTTGATGTACTTGATAACAGCA 876
| ||||||||||||||||||| |||||||||| ||| ||| ||||| |||||||||||||
Sbjct 769 CCACCAAACCAAGCCAGACAGCTCAAGCTGCAATCCATGTGGATGTGCTTGATAACAGCA 828
Query 877 ACAAGCGTGTAGCTACTCCTCGCGGTTACCCGTTTCTTCATGAATCCATGCAGATGCATC 936
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 829 ACAAGCGTGTAGCTACTCCTCGTGGTTACCCGTTTCTGCATGAATCCATGCAGATGCATC 888
Query 937 AAAAGCCATTGGCAATTAGACAAGGAACT-G----G-TCCTGCT--T-CT---GCTCC-T 983
|||||||||||||||| |||||||||||| | | |||||| | || |||| |
Sbjct 889 AAAAGCCATTGGCAATAAGACAAGGAACTAGCACTGCTCCTGCGCCTACTACAGCTCTAT 948
Query 984 GCTCCAGCTCCAGTCAACTTGGGTTCGGTCTATCCTTTGTATTACGAAGGTAATAATCAA 1043
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 949 -CTCCAGCTCCAGTCAACTTGGGTTCGGTCTATCCTTTGTACTACGGAGGTAATAATCAG 1007
Query 1044 ACGCAGCAAGCTGACATGTCTTTTAGAGTCCCTGAAGCGCCCATAATCATTGGCATGCCT 1103
|| |||||||| |||||| |||| |||||||||||||| |||||||||||||||||||||
Sbjct 1008 ACTCAGCAAGCCGACATGCCTTTCAGAGTCCCTGAAGCTCCCATAATCATTGGCATGCCT 1067
Query 1104 ATTGGTATAAAGCCCTCAGAAGAAGCAACTGAGAGGGTCTGTGATTTATCCTTGAGGCTC 1163
||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1068 ATTGGTATAAAGCCCCCAGAAGAAGCAACAGAGAGGGTCTGTGATTTATCATTGAGGCTC 1127
Query 1164 GGTATATCTTCAGAACCGTCTACAAGAATAGATGTCGGGTCTAGTCGGGCTTACCCGGGA 1223
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1128 GGTATATCTTCAGAACCGTCTACAAGAATAGATGTCGGGTCGAGTCGGGCTTACCCGGGA 1187
Query 1224 AGAAACCAAGAAGAGTTATGTTTATTCGCAGAGGTAAAGAAGAATGATAGGTTTGAATGG 1283
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1188 AGAAACCAAGAAGAGTTATGTTTATTCTCAGAGGTAAAGAAGAATGATAGGTTTGACTGG 1247
Query 1284 TTTTCAAATAGTGAAGGTCAGAATTCAGATTCGAGAGTTAAAAAGCACAGAACTTTGTGT 1343
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1248 TTTTCAAATAGTGAAGGTCAGAATTCAGATTCGAGAGTTAAAAAGCACAAAACTTTGTGT 1307
Query 1344 GGAGACTTCCTTTAGGACTTGC-TTAGT----TGTTGTAAAAGCTTCAGGTTTATTGGTT 1398
|||||||||||||||||||||| ||| | | ||||||||||||||||||||||||||
Sbjct 1308 GGAGACTTCCTTTAGGACTTGCGTTACTCAAATCTTGTAAAAGCTTCAGGTTTATTGGTT 1367
Query 1399 TACTATTTTATTGACTCTACTAGTCTTAGCGTTCGCTTCAAGTTTTATAATAAAGATCCA 1458
|| ||||||||||||||||||||||||||| || ||||||| ||||| |||||| ||||
Sbjct 1368 TAATATTTTATTGACTCTACTAGTCTTAGCTTTAGCTTCAAATTTTAAAATAAAAATCCG 1427
Query 1459 TGGATTGATCT 1469
|| ||||||||
Sbjct 1428 TGAATTGATCT 1438
Score = 187 bits (101), Expect = 2e-46
Identities = 121/130 (93%), Gaps = 4/130 (3%)
Strand=Plus/Plus
Query 61 GGAGATGTGACCGGTATGAGCTCAAGTAGACGAAATCTCCAAACGATTCAGAGCTTCAAA 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 44 GGAGATGTGACCGGTATGAGCTCAAGTAGACGAAATCTCCAAACGATTCATAGCTTCAAA 103
Query 121 GCTTCAGATCTGTTTCCTTGGATCGGTTAAAAA-GAGTTTT-AAGGTTGATTTTTCTT-T 177
||||||||||||||||||||||||||||||||| || |||| || ||| | ||||| | |
Sbjct 104 GCTTCAGATCTGTTTCCTTGGATCGGTTAAAAACGATTTTTTAAAGTT-ACTTTTCCTCT 162
Query 178 CCACACCATT 187
||||||||||
Sbjct 163 CCACACCATT 172
Score = 75.0 bits (40), Expect = 1e-12
Identities = 42/43 (98%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 1 ATTTCCAGAAGCGGCAACGATGGAGACAACAATCGGAGATTCT 43
|||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 ATTTCCAGAAACGGCAACGATGGAGACAACAATCGGAGATTCT 43
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55078494270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5