BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24160.1
Length=1580
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930466 jgi|Araly1|930466|scaffold_302923.1 1742 0.0
> Ahg930466 jgi|Araly1|930466|scaffold_302923.1
Length=1139
Score = 1742 bits (943), Expect = 0.0
Identities = 1080/1145 (94%), Gaps = 14/1145 (1%)
Strand=Plus/Plus
Query 99 CGTCGACTCTCGTTCTTAAAGATGAAAGCTTTCTACGTATTCGTTGT-TGCTCTTCTTCT 157
|||||||| ||||| |||||||||||| ||||||||||| |||| || | ||||||||||
Sbjct 1 CGTCGACTTTCGTTGTTAAAGATGAAAACTTTCTACGTACTCGTCGTCT-CTCTTCTTCT 59
Query 158 CAC-CTTGAATTATAGGGGAGAAGCAAGTGGTTCTGTTTTCTTCATTGATGGATCCAACA 216
||| | | |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 60 CACAC-TCAATTATAGGGGAGAAGCAAGTGGTTCTGTTTTCTTCATTGATGGATCCAATA 118
Query 217 ATCAATATCTTCGTCCACGATCATCCAGTGAGGCACTTCCCATGTCGCCTGT-TGAAATA 275
| |||| ||||||||||||||||||||| ||||||||||||||||||||| | |||||||
Sbjct 119 ACCAATTTCTTCGTCCACGATCATCCAGCGAGGCACTTCCCATGTCGCCT-TCTGAAATA 177
Query 276 TCTG-CAGCAGTGTCTGCCTTGTTGGGTTTTGCACCTTCAGCAACTTTGACAGCTGATGG 334
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TC-GTCAGCAGTGTCTGCCTTGTTGGGTTTTGCACCTTCAGCAACTTTGACAGCTGATGG 236
Query 335 CTCATCCAAGTTGAACAAGATTCTAAAACCTAATCCATTTGAGAGGCCTCGCGCTGCTTT 394
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 237 CTCATCCAAGCTGAACAAGATTCTAAAACCTAATCCATTTGAGAGGCCTCGTGCTGCTTT 296
Query 395 TGTGCTAGAAATCGCTGGAGCTGATGATATGCTTTTGGAAACCTCCCCTAGTCATTCTTT 454
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct 297 TGTGCTAGAAATCGCTGGAGCTGATGATGTGCTTGTGGAAACCTCCCCTAGTCATCCTTT 356
Query 455 CTTGGGCAATGCCATAAGGAGCAGTATTAAGTCTGATTCGTACAAAGCTGATACTGAACT 514
|||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 357 CTTGGGAAATGCCATAAGGAGCAGTATTAAGTCTGATTCATACAAAGCTGACACTGAACT 416
Query 515 TCCAGACAATGAAGTGGTTGTTGTGTCTGTCAATGAACCCTCCTCTGATGTGACTGACAA 574
|||||||| |||||||||| |||||||||||||||||||| | |||||||||||||||||
Sbjct 417 TCCAGACAGTGAAGTGGTTTTTGTGTCTGTCAATGAACCCGCATCTGATGTGACTGACAA 476
Query 575 GGACATTAATGATTTTGCATCTTGGTTGGGTGGATCATATGTTGCTGG---AGCTGAACC 631
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 477 GGACATAAATGATTTTGCATCTTGGTTGGGTGGATCATATGTTGCTGGCTCTGCTGAACA 536
Query 632 ATCGTCTGGATTGTTGAGTATCCCTCTGGCTGGGGGTGCTAATGTGGAGTTCAATTTGGA 691
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 537 ATTGTCTGGATTGTTGAGTGTCCCTCTGGCTGGGGGTGCTAATGTGGAGTTCAATTTAGA 596
Query 692 AAAGGAAGCAGAGAGGAAATTTGCATTGAACCTTTTGGGTCTATATCAGAATATCAGACA 751
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 597 AAAGGAAGCAGAGAGGAAATTTGTATTGAACCTTTTGGGTCTATATCAGAATATCAGACG 656
Query 752 GGCAGTCAGCGTTTATGACGATTTATCTCATGGTATTGACAGAACTGCCGAATTAACGGT 811
||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 657 GGCAGTCAGCGTTCATGACGATTTATCTCATGGTATTGAGAGAACTGCTGAATTAACGGT 716
Query 812 TGGACGCTTTGGTGGTATCGATGCTTTAGCACAGGAGTATGGACAAGGTATGGCTAAGCA 871
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TGGACGCTTTGGTGGTATCAATGCTTTAGCACAGGAGTATGGACAAGGTATGGCTAAGCA 776
Query 872 AGGGATGGATGTATTACTTTCCACATTATCAAAGCTATTCAATCTGTTGGAGACATCTCA 931
||| ||| ||||||| ||||||||| |||| ||||||||||||||||||||||| |||||
Sbjct 777 AGGCATGAATGTATTGCTTTCCACACTATCTAAGCTATTCAATCTGTTGGAGACTTCTCA 836
Query 932 TAAAGGCCAAATTGTTGGGGTTATCGTCCTTGATGAGAGAGTAAACCAAGAATCAGA-AA 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 837 TAAAGGCCAAATTGTTGGGGTTATCGTCCTTGATGAGAGAGTAAACCAAGAATCA-ACAA 895
Query 991 ATCTTTTGAACTTTGGGTCTTCCCGTTCATCTGCACGCTCAATGGTGGAAGTGGAGGGAA 1050
|||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||
Sbjct 896 ATCTTTTGAACTTTGGGTCTTCTCGTTCATCTGCACGCTCAATGGCGGAAGTAGAGGGAA 955
Query 1051 TTCCAAGTGCAGCCATTATCGCTGAGGTTATACTTGTTAGGCTGACTCTTGCATGGTTGA 1110
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 TTCCAAGTGCAGCAATTATCGCTGAGGTTATACTTGTTAGGCTGACTCTTGCATGGTTGA 1015
Query 1111 CTGGAATCATTCTTCTCATTGCAACTATCCTTGGGGTATACTTCCTTATGAACATGCCTT 1170
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1016 CTGGAATCATTCTTCTCATTGCAACTATCCTTGGGGTGTACTTCCTTATGAACATGCCTT 1075
Query 1171 TGACGAAGGATACTCTTCTATATTCAAATGTAAAGCTCGACTAAGAAATGAAACAGAGCT 1230
||||||||||||| ||| |||||||||| || |||||||||||||| ||||||| |||||
Sbjct 1076 TGACGAAGGATACGCTTTTATATTCAAACGTGAAGCTCGACTAAGAGATGAAACGGAGCT 1135
Query 1231 TCAAA 1235
| |||
Sbjct 1136 T-AAA 1139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59192240730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5