BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24170.1
Length=2007
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930465 jgi|Araly1|930465|scaffold_302922.1 2479 0.0
> Ahg930465 jgi|Araly1|930465|scaffold_302922.1
Length=1540
Score = 2479 bits (1342), Expect = 0.0
Identities = 1463/1523 (96%), Gaps = 1/1523 (0%)
Strand=Plus/Plus
Query 252 AATCATGGCGAGGAAGATGCTTGTTGATGGTGAGATTGATAAGGTGGCGGCTGATGAAGC 311
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 17 AATCATGGCGAGGAAGATGCTTGTTGATGGAGAGATTGATAAGGTGACGGCTGATGAAGC 76
Query 312 CAACGCGACGCACTATGATTTTGATTTGTTTGTCATCGGTGCCGGGAGTGGCGGTGTTCG 371
|||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 77 CAACGCCACGCACTATGATTTTGATTTGTTCGTCATCGGTGCCGGTAGTGGCGGTGTTCG 136
Query 372 TGCTGCTAGGTTTTCGGCTAATCATGGCGCTAAGGTTGGTATTTGTGAGCTTCCATTTCA 431
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 137 TGCTGCTAGGTTTTCCGCTAATCACGGCGCTAAGGTTGGTATTTGTGAGCTTCCATTTCA 196
Query 432 CCCTATTAGCTCTGAGGAGATTGGAGGCGTTGGTGGAACCTGTGTTATCCGTGGTTGTGT 491
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 197 CCCTATTAGCTCCGAGGAGATTGGAGGAGTTGGTGGAACCTGTGTTATCCGTGGTTGTGT 256
Query 492 TCCTAAAAAGATTCTCGTCTATGGAGCTACTTACGGTGGTGAACTTGAGGATGCTAAAAA 551
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 257 TCCTAAAAAGATTCTAGTCTATGGGGCTACTTACGGTGGTGAACTTGAGGATGCTAAAAA 316
Query 552 TTATGGGTGGGAAATAAATGAGAAAGTCGACTTCACATGGAAGAAGCTTTTGCAAAAGAA 611
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 TTATGGATGGGAAATAAATGAGAAAGTCGACTTCACATGGAAGAAGCTTTTGCAAAAGAA 376
Query 612 GACTGATGAGATACTAAGACTGAATAATATCTACAAGCGGTTATTGGCAAATGCTGCGGT 671
|||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 377 GACTGATGAGATTCTAAGACTGACTAATATCTACAAGCGGTTGTTGGCAAATGCTGCGGT 436
Query 672 GAAATTGTATGAAGGTGAAGGAAGAGTAGTTGGTCCCAACGAAGTGGAGGTGAGACAAAT 731
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 437 GAAATTGTATGAAGGTGAAGGAAGAGTAGTTGGTCCCAATGAAGTGGAGGTGAGACAAAT 496
Query 732 AGATGGCACAAAAATAAGTTATACCGCAAAGCACATATTGATTGCCACTGGCAGTCGGGC 791
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 497 AGATGGCACGAAAATAAGCTATACCGCAAAGCACATATTGATTGCCACTGGCAGTCGGGC 556
Query 792 GCAAAAGCCTAATATTCCTGGACATGAGCTGGCTATTACATCTGATGAAGCTTTGAGCTT 851
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 557 ACAAAAGCCTAATATTCCTGGACATGAGCTGGCTATTACATCTGATGAAGCTTTAAGCTT 616
Query 852 GGAAGAATTTCCCAAGCGTGCTATAGTGCTTGGAGGAGGGTATATTGCTGTGGAGTTTGC 911
|||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 617 GGAAGAATTTCCTAAGCGTGCTGTAGTGCTTGGAGGAGGGTACATTGCTGTGGAGTTTGC 676
Query 912 ATCAATATGGCGTGGAATGGGTGCTACTGTAGATTTATTCTTCAGGAAGGAACTTCCGCT 971
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 677 ATCAATATGGCGTGGAATGGGTGCTACCGTAGATTTATTCTTCAGGAAGGAACTTCCACT 736
Query 972 AAGGGGTTTTGATGACGAAATGAGGGCACTAGTTGCTAGAAATCTTGAAGGAAGGGGCGT 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 AAGGGGTTTTGATGACGAAATGAGGGCACTAGTTGCTAGAAATCTTGAAGGAAGGGGCGT 796
Query 1032 TAATCTGCATCCACAAACAAGTTTGACTCAGTTGACAAAAACAGACCAGGGGATCAAAGT 1091
||| |||||||| |||||||||||||||||||||| |||||||||| | |||||||||||
Sbjct 797 TAACCTGCATCCGCAAACAAGTTTGACTCAGTTGATAAAAACAGACAACGGGATCAAAGT 856
Query 1092 CATATCGTCCCATGGGGAGGAATTCGTGGCAGATGTCGTCCTATTTGCTACTGGCAGAAG 1151
||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 857 CATATCGTCTCATGGGGAAGAATTCGTGGCAGATGTTGTCCTATTTGCTACTGGCAGAAA 916
Query 1152 TCCTAATACCAAAAGATTGAATTTAGAAGCTGTTGGTGTTGAACTTGATCAGGCTGGAGC 1211
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 917 TCCTAATACCAAGAGATTAAATTTAGAAGCTGTTGGTGTTGAACTTGATCAGGCTGGAGC 976
Query 1212 TGTGAAGGTTGACGAGTATTCACGAACTAATATACCTAGCATATGGGCTGTAGGAGATGC 1271
|||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 977 TGTGAAGGTTGATGAGTACTCACGCACTAATATACCTAGCATATGGGCTGTGGGAGATGC 1036
Query 1272 CACAAACCGAATTAACCTTACACCTGTTGCGTTAATGGAGGCCACCTGTTTTGCGAACAC 1331
||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||
Sbjct 1037 TACAAACCGAATTAACCTTACACCTGTTGCATTAATGGAGGCCTCCTGCTTTGCGAACAC 1096
Query 1332 TGCTTTTGGTGGAAAGCCTACTAAAGCAGAATACAGCAATGTCGCCTGTGCTGTATTTTG 1391
|| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1097 TGTTTTTGGTGGAAAGCCTACTAAAGCAGACTACAGCAATGTCGCATGTGCTGTATTTTG 1156
Query 1392 CATACCACCACTAGCTGTAGTGGGTCTCAGCGAAGAAGAAGCAGTAGAACAAGCAACCGG 1451
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 CATACCTCCACTAGCTGTGGTGGGTCTCAGCGAAGAAGAAGCAGTAGAACAAGCAACCGG 1216
Query 1452 TGATATTCTGGTCTTCACCTCAGGCTTTAATCCAATGAAGAACACCATTTCTGGACGCCA 1511
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1217 GGATATTCTGGTTTTCACCTCAGGCTTTAATCCAATGAAAAACACCATTTCTGGACGGCA 1276
Query 1512 GGAAAAGACATTGATGAAGCTAATAGTTGATGAGAAGAGTGATAAGGTTATTGGAGCATC 1571
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1277 GGAAAAGACATTGATGAAGCTAATAGTTGATGAGAAGACTGATAAGGTTATTGGAGCATC 1336
Query 1572 CATGTGCGGTCCTGATGCAGCTGAGATCATGCAGGGGATTGCAATTGCGCTCAAGTGTGG 1631
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1337 CATGTGCGGTCCTGATGCAGCTGAGATCATGCAGGGGATTGCAATTGCACTCAAGTGTGG 1396
Query 1632 AGCAACCAAAGCACAATTTGATAGCACGGTTGGGATACATCCATCTTCTGCAGAGGAATT 1691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1397 AGCAACCAAAGCACAATTTGATAGCACGGTTGGGATACATCCATCTTCTGCAGAGGAATT 1456
Query 1692 TGTGACAATGCGCAGTGTGACCAGACGCATTGCCCACAAACCCAAACCTAAGACAAATCT 1751
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1457 TGTGACAATGCGCAGTGTGACCAGACGCATTGCCTGCAAACCCAAACCTAAGACGAATCT 1516
Query 1752 ATGAACCGCAAAA-TATAAAGAG 1773
||||||||||||| | |||||||
Sbjct 1517 ATGAACCGCAAAAATCTAAAGAG 1539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75456775345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5