BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24210.1
Length=2329
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479907 jgi|Araly1|479907|fgenesh2_kg.3__2608__AT3G24210.1 3127 0.0
> Ahg479907 jgi|Araly1|479907|fgenesh2_kg.3__2608__AT3G24210.1
Length=2127
Score = 3127 bits (1693), Expect = 0.0
Identities = 1958/2082 (94%), Gaps = 33/2082 (2%)
Strand=Plus/Plus
Query 135 AAAGTGAATGCTGCAAAGCAAAAACTTGAGAAGATTGTGTAAGAAGTCATTCATTATCTT 194
||||||||||||||||| | ||| ||||||||||||| |||||| |||||||||||||||
Sbjct 58 AAAGTGAATGCTGCAAAAC-AAAGCTTGAGAAGATTGAGTAAGACGTCATTCATTATCTT 116
Query 195 TCTTGCAGAGAAAGTTAGAAGTTGAAAAGACA-AAA----AGGA-TTTTTGATCTGAAGA 248
|||||||||||||||||||||||||||| ||| ||| || | |||||||||||||||
Sbjct 117 TCTTGCAGAGAAAGTTAGAAGTTGAAAAAACACAAAGGTGAGAACTTTTTGATCTGAAGA 176
Query 249 TTCTGATTTGGGATCTCAAATGGAGAACGTTGATGTGTCTAAGTACATACACAGCTCTGT 308
||||||||| |||||||||||||||||||||||||| || ||||||| ||||||||||||
Sbjct 177 TTCTGATTTTGGATCTCAAATGGAGAACGTTGATGTTTCCAAGTACAGACACAGCTCTGT 236
Query 309 GCACAAAGCTGTTGCTTCTAAAGACTATGTTGGTCTC-AGAGCAATACTGTCTTCTCTTC 367
||||| |||||| |||||||||||||||| ||||||| || ||||| |||| ||||||||
Sbjct 237 GCACAGAGCTGTCGCTTCTAAAGACTATGCTGGTCTCAAG-GCAATTCTGTTTTCTCTTC 295
Query 368 CAAAGCCTAAAGATCCATGTGAGATTCAAACAGAAGCAGCTTCATTATCCGAGGAAGCAA 427
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 296 CAAAGCCTAAAGATCCTTGTGAGATTCAAACAGAAGCAGCTTCATTAGCCGAGGAAGCAA 355
Query 428 AATCCGAT-ACCATTTCAGCTGTGATTGATAGAAGAGACGTCCCAAGCCGCGACACGCCG 486
|||||||| | |||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 356 AATCCGATGA-CATTTCGGCTGTGATTGATCGAAGAGACGTCCCAAGCCGCGACACGCCA 414
Query 487 CTACATCTAGCGGTGAAGCTCTGTGATTCAACATCAGTAGAAATGCTAATGGTTGCTGGA 546
|||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 415 CTACATTTAGCTGTGAAGCTCTGTGATTCAACATCAGTAGAAATGCTGATGGTTGCTGGA 474
Query 547 GCTGACTGGACTTTGCAAAACGAAGACGGTTGGAACGCGTTGCAGGAAGCTGTTTGCAGT 606
||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 475 GCTGATTGGACTTTGCAGAACGAGGACGGTTGGAACGCGTTGCAAGAAGCTGTTTGCAGT 534
Query 607 AGACAAGAGGCGATAGCGATGATTATAGTTCGGCACTATCAGCCT-TTAGCTTGGGCTAA 665
||||||||||||||||||||||||||||| ||||| ||||||||| || |||||||||||
Sbjct 535 AGACAAGAGGCGATAGCGATGATTATAGTCCGGCATTATCAGCCTCTT-GCTTGGGCTAA 593
Query 666 ATGGTGTAGGAGACTACCTCGTTTGATAGCTACAATGAGTAAGATGAAAGATTTTTACTT 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 ATGGTGTAGGAGACTACCTCGTTTGATAGCTACAATGAGTAAGATGAAAGATTTTTACTT 653
Query 726 GGAGATGAGTTTTCATTTTGAGAGCTCTGTTGTTCCTTTTGTATCTAAGGTTGCACCGTC 785
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 654 GGAGATGAGTTTTCATTTTGAGAGCTCTGTTGTGCCTTTTGTATCTAAGGTTGCGCCGTC 713
Query 786 TGATACTTATAAGGTTTGGAAAGTGGGATCGAATTTGAGAGCGGATATGACTATGGCTGG 845
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TGATACTTACAAGGTTTGGAAAGTGGGATCGAATTTGAGAGCGGATATGACTATGGCTGG 773
Query 846 TTTTGATGGGTTT-AAGATTCAACGGTCTGATCAAAGTATATTGTTTCTTGGTGATGGGT 904
||| ||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 774 TTTCGAT-GGTTTCAAGATTCAACGGTCTGATCAGAGTATTTTGTTTCTTGGTGATGGGT 832
Query 905 CAGAGGATGGTGAAGTTGCTCGTGGATCGCTTTACATGGTGAATCATAAGGATAAAGAAG 964
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 833 CAGAGGATGGTGAAGTTGCTCGTGGATCGCTTTATATGGTGAATCATAAGGATAAAGAAG 892
Query 965 TGATGAATGCGTTGGATGGTGCTTGTGGAGTTCCATCAGAAGAAGAAGTTAGGAAAGAAG 1024
|| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 TGGTTAATGCTTTGGATGGTGCTTGTGGAGTTCCATCAGAAGAAGAAGTTAGGAAAGAAG 952
Query 1025 TGGCTGCAATGTGTAAGAGCAATATCTTTAGACCCGGGATTGATGTGACACAAGCGGTTT 1084
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 953 TGGCTGCAATGTGTAAGAGCAATATCTTTAGACCCGGGATTGATGTGACACAAGCTGTTC 1012
Query 1085 TATCTCCGCAGACTAATTGGAGGAGGCAGGAGAAGAGTGAGATGGTTGGTCCTTGGAAAG 1144
|||| ||||| || ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1013 TATCGCCGCAAACAAATTGGAGGAGACAGGAGAAGAGTGAGATGGTTGGTCCTTGGAAAG 1072
Query 1145 CTAAGGTCTATGAGATGAACAATGTTGTTGTTAGTGTTAAGTCAAGAAAGGTTCCTGGTT 1204
|||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1073 CTAAAGTCTATGAGATGAACAATGTTGTTGTTAGTATTAAGTCTAGAAAGGTTCCTGGTT 1132
Query 1205 CATTGGCTGTAGAAGGAGGCGATGATGATATCTGCGATGTTTTAACAGATGAAGAGCAAA 1264
||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1133 CATCGGCTGTAGAAGGAGGCGATGATGATCTCTGCGATGTTCTAACAGATGAAGAGCAAA 1192
Query 1265 AGCAACTAGAGGATGCTCTTAAGCTGGATTTACCAGACTTCCCAAATGTCAATGGTGAGA 1324
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 AGCAACTAGAGGCTGCTCTTAAGCTGGATTTACCAGACTTCCCAAATGTCAATGGTGAGA 1252
Query 1325 ATGGTTTCA-T--TG-T--TCATCATCAGGAAGATCATGTTGAGGCCAACAAGAAAGCAG 1378
||||||||| | || | |||||||||| |||||||| | ||||||||||||||| | |
Sbjct 1253 ATGGTTTCATTGATGATGATCATCATCAGCAAGATCATATAGAGGCCAACAAGAAATCGG 1312
Query 1379 AGAAGAAAGGGTGGTTAGGAGGTTGGAG---AAAGAAAGAGACTAAACAAGAGAAGCAGA 1435
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1313 AAAAGAAAGGGTGGTTAGGAGGTTGGAGATCAAAGAAAGAGACTAAACAAGAGAAGCAAA 1372
Query 1436 TTCAATACGCGCCACCGAGAAGCTCTCTTTGTGTGAATGAGAAAGTAAGTAATCTATTGG 1495
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 TTCAATACGCGCCTCCGAGAAGCTCTCTTTGTGTGAATGAGAAAGTAAGTAATCTATTGG 1432
Query 1496 GAGAGTCTAATCAGATAAAACCAGGAAGACACTCAGTAGATAATGAGCATTATAGGAAAC 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 GAGAGTCTAATCAGATAAAACCAGGAAGACACTCAGTAGATAATGAGCATTATAGGAAAC 1492
Query 1556 CAAAAGCATTGGTCTCTGACAAGACTCGCCACGAAAGCGAATATAAGAAAGGGCTACGTC 1615
||||||||||||| ||||| ||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1493 CAAAAGCATTGGTATCTGATAAGACTCGCCACGAAAGCGAATACAAGAAAGGGTTACGTC 1552
Query 1616 CTGTTCTTTGGCTATCTCCAAACTTCCCATTACAAACAGAGGAG-TTGCTTCCTTTACTT 1674
||||||||||| |||||||||||||||||||||||||||| ||| || ||||||||||||
Sbjct 1553 CTGTTCTTTGGTTATCTCCAAACTTCCCATTACAAACAGAAGAGCTT-CTTCCTTTACTT 1611
Query 1675 GACATACTTGCAAACAAAGTTAAGGCGATTCGTCGTCTTAGAGAACTTCTTACCACAAAA 1734
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1612 GACATACTTGCAAACAAAGTTAAGGCGATTCGTCGTCTCAGAGAACTTCTCACCACAAAA 1671
Query 1735 CTTCCCTCTGGAACATTTCCGGTCAAGGTTGCTATTCCAGTGGTACCTACAATAAAAGTG 1794
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 CTTCCTTCTGGAACATTTCCGGTCAAGGTTGCTATTCCAGTGGTACCTACAATAAAAGTG 1731
Query 1795 CTTGTTACATTCACAAAGTTTGAAGAAATTGAGCCTGTAGATGAGTTTAAGACGCCTCTC 1854
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1732 CTTGTTACATTCACAAAGTTTGAAGAAATTGAGCCTTTGGATGAGTTTAAGACGCCTCTG 1791
Query 1855 TCGAGCCCGACTTCTTCTGGCTATGAGAGTCCAGCTGCTGCAACAACTGACTTCACCAAC 1914
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1792 TCGAGCCCGACTGCTTCTGGCTATGAGAGTCCAGCTGCTGCAACAACTGAGTTCAGCAAC 1851
Query 1915 TCATCATCGTCCTCCTCGTGGTTTCGTCGGTCTAGATCAAACAAAGATGGTGGGAGTAGT 1974
||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1852 TCATC---GTCCTC---GTGGTTTCGTCGGTCTAGATCAAACAAAGATGGTGCGAGTAGT 1905
Query 1975 AAGTCAAAAACATTACAAGACCCATTTGCTATACCCACAGGTTATACTTGGGTCAGTCTT 2034
||||| |||||||||||||||||||||||||| ||||| |||||||| ||||||| ||||
Sbjct 1906 AAGTCCAAAACATTACAAGACCCATTTGCTATCCCCACTGGTTATACGTGGGTCACTCTT 1965
Query 2035 GAATCaaagaaaaggaaaccaaaaaagggtggtaaaaaaaCAGAACAAGTTAGCTAACCA 2094
||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||| ||
Sbjct 1966 GAATCAAAGAAAAGGAAACAAAAAAAGGGTGGTAAAAAAGCAGAACAAGATAGCTAATCA 2025
Query 2095 CTTC-AACTCTTGAGAACATAATACTAACCTACACAGGTTTTCTTCATGAGATTTGTGAA 2153
|||| ||||||||||||||||||||||| |||| ||||| |||||||||||||| |||||
Sbjct 2026 CTTCCAACTCTTGAGAACATAATACTAATCTACGCAGGTCTTCTTCATGAGATTCGTGAA 2085
Query 2154 AAGACATTGAAGAAAGGGTGAGAAAGGCATAAAAATTCTGAT 2195
||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 2086 AAGACATTGAAGAAAGGGTTAGAAAGGCATAGAAATTCTGAT 2127
Score = 95.3 bits (51), Expect = 2e-18
Identities = 55/57 (96%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 16 TCTGATCTGGAATTAGATCACAAGAATCTCTCTTTCAACTTCTCTCCTATGACGAAA 72
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 TCTGATCTGGATTTAGATCACAAGAATCTCTCTTTCAACTTCTCTCCTATGACAAAA 57
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87721834235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5