BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24220.1
Length=1739
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930459 jgi|Araly1|930459|scaffold_302916.1 2663 0.0
Ahg356894 jgi|Araly1|356894|fgenesh1_pg.C_scaffold_8000681 562 3e-159
> Ahg930459 jgi|Araly1|930459|scaffold_302916.1
Length=1774
Score = 2663 bits (1442), Expect = 0.0
Identities = 1644/1743 (94%), Gaps = 8/1743 (0%)
Strand=Plus/Plus
Query 1 CCACCATGCAACACTCTCTTCGTTCTGATCTTCTTCCGACGAAGACTTCTCCTCGTTCTC 60
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 16 CCACCATGCAACACTCTTTTCGTTCTGATCTTCTTCCGACGAAGACTTCTCCTCATTCTC 75
Query 61 ATTTACTTCCACAACCCAAAAATGCAAATATTTCTCGACGAATTCTCATTAACCCTTTCA 120
|||| ||||||||| |||||||||||||||||||||||| |||||||||| |||||||
Sbjct 76 ATTTGCTTCCACAAATGAAAAATGCAAATATTTCTCGACGACTTCTCATTAATCCTTTCA 135
Query 121 AGATACCGACACTTCCTGATCTCACTTCTCCGGTTCCGTCACCGGTTAAGCTCAAACCAA 180
||||||| |||||||||||||||| |||||||||| |||| |||||||||||||||||||
Sbjct 136 AGATACCAACACTTCCTGATCTCATTTCTCCGGTTACGTCGCCGGTTAAGCTCAAACCAA 195
Query 181 CGTATCCAAACTTAAACCTTCTTCAGAAGCTAGCGGCTACGATGCTCGACAAGATTGAGT 240
|||| || |||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 196 CGTACCCGAACTTAAACCCTCTTCAGAAGCTAGCGGCTACGATGCTTGACAAGATTGAGT 255
Query 241 CCTCTATCGTTATTCCTATGGAGCAGAATCGCCCGCTTCCTAAACCGACCGACCCGGCGG 300
|||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 256 CCTCTATCGTTACACCTATGGAGCAGAATCGCCCGCTTCCTAAACCGACTGATCCGGCGA 315
Query 301 TTCAATTATCAGGTAACTTCGCTCCGGTTAATGAATGTCCGGTTCAGAACGGTTTAGAAG 360
| ||| | || |||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 316 TACAACTGTCCGGTAACTTCGCTCCGGTTCATGAATGTCCGGTTCAGACCGGTTTAGAAA 375
Query 361 TGGTTGGTCAGATTCCTTCTTGTCTAAAAGGAGTTTACATCCGTAACGGTGCAAACCCTA 420
| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 376 TCCTTGGTCAGATTCCTTCTTGTCTAAAAGGAGTTTACATCCGTAACGGTGCTAACCCTA 435
Query 421 TGTTTCCGCCGTTAGCCGGACATCATTTATTTGACGGTGACGGAATGATTCACGCCGTTA 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 AGTTTCCGCCGTTAGCCGGACATCATTTATTTGACGGTGACGGAATGATTCACGCCGTTA 495
Query 481 GTATCGGTTTTGATAACCAGGTTAGTTACAGCTGCCGGTACACTAAAACAAACCGGCTTG 540
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 GTATCGGTTCTGATAACCAGGTTAGTTACAGCTGCCGGTACACTAAAACAAACCGGCTTA 555
Query 541 TTCAAGAAACCGCGCTTGGACGATCGGTTTTCCCTAAACCAATCGGCGAGCTTCACGGCC 600
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 556 TTCAAGAAACCGAGCTTGGACGATCGGTTTTTCCTAAACCAATCGGCGAGCTTCACGGCC 615
Query 601 ATTCCGGTCTAGCTCGACTCGCTCTCTTCACGGCTCGAGCTGGGATCGGTCTAGTGGACG 660
|||||||||||||||| |||||||||||| |||||||||||||||||||||| || ||||
Sbjct 616 ATTCCGGTCTAGCTCGGCTCGCTCTCTTCTCGGCTCGAGCTGGGATCGGTCTCGTTGACG 675
Query 661 GGACACGTGGCATGGGCGTAGCTAACGCCGGTGTGGTTTTCTTTAACGGCAGGTTATTAG 720
||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||| |
Sbjct 676 GGACACGTGGCATGGGCGTAGCTAACGCCGGCGTGGTTTACTTTAACGGGAGGTTATTGG 735
Query 721 CCATGTCAGAAGATGATCTTCCTTACCAAGTGAAGATCGACGGTCAAGGAGATCTTGAGA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 CCATGTCAGAAGATGATCTTCCTTACCAAGTGAAGATCGACGGTCAAGGAGATCTTGAGA 795
Query 781 CGATCGGACGGTTCGGATTCGATGACCAGATTGACTCTTCAGTGATAGCGCATCCTAAGG 840
||||||||||||||||||||||||| ||||| |||| ||| |||||||||||||||||||
Sbjct 796 CGATCGGACGGTTCGGATTCGATGATCAGATCGACTGTTCTGTGATAGCGCATCCTAAGG 855
Query 841 TGGACGCGACCACAGGAGATCTCCATACACTGAGCTACAACGTTTTGAAGAAACCTCATC 900
||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 856 TGGACCCAACCACAGGAGATCTCCATACTCTGAGCTACAACGTTTTGAAGAAACCTCATC 915
Query 901 TCAGGTATCTTAAATTCAACACGTGCGGGAAAAAGACACGTGACGTGGAGATCACGCTCC 960
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 TCAGGTATCTTAAATTCGACACGTGCGGGAAAAAGACACGTGACGTGGAGATCACGCTCC 975
Query 961 CTGAACCAACGATGATTCATGATTTCGCGATAACCGAGAATTTTGTCGTTATACCGGATC 1020
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 976 CTGAACCAACGATGATTCATGATTTCGCGATAACCGAGAATTTCGTCGTTATACCGGATC 1035
Query 1021 AGCAAATGGTATTCAAATTATCCGAAATGATTCGGGGCGGGTCACCCGTTATCTACGTTA 1080
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1036 AACAAATGGTATTCAAATTATCCGAAATGATTCGGGGCGGGTCACCGGTTATCTACGTTA 1095
Query 1081 AAGAAAAAATGGCGAGATTTGGAGTTTTGTCAAAGCAGGATCTGACCGGGTC-GGATATA 1139
|||| |||||| ||||||||||||||||||| |||||||||| ||||||||| || ||||
Sbjct 1096 AAGAGAAAATGTCGAGATTTGGAGTTTTGTCGAAGCAGGATCCGACCGGGTCCGG-TATA 1154
Query 1140 AATTGGGTTGATGTACCGGATTGTTTCTGTTTCCATCTATGGAATGCGTGGGAAGAGAGA 1199
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1155 AATTGGGTTGATGTACCGGATTGTTTCTGTTTCCATTTATGGAATGCGTGGGAAGAGCGA 1214
Query 1200 ACCGAAGAGGGAGACCCAGTTATCGTCGTAATCGGGTCATGTATGAGCCCACCCGACACG 1259
|||||||| ||||| | |||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 1215 ACCGAAGATGGAGATCTGGTTATCGTCGTAATCGGGTCGTGTATGAGCCCGCCCGATACG 1274
Query 1260 ATCTTTAGTGAATCAGGAGAACCAACCCGGGTTGAATTAAGTGAGATCCGGTTAAACATG 1319
||||||||||||||||||||||| |||||| |||||||||| ||||| ||||||||||||
Sbjct 1275 ATCTTTAGTGAATCAGGAGAACCGACCCGGATTGAATTAAGCGAGATACGGTTAAACATG 1334
Query 1320 CGTACAAAAGAATCGAACCGTAAGGTTATCGTAACCGG-AGTGAATTTAGAAGCGGGTCA 1378
|| ||||||||||||||||| ||||||||||||||||| | ||||||||||||| |||||
Sbjct 1335 CGAACAAAAGAATCGAACCGGAAGGTTATCGTAACCGGGA-TGAATTTAGAAGCTGGTCA 1393
Query 1379 CATAAACC-GTAGTTACGTGGGCCGGAAAAGCCAGTTCGTTTACATAGCAATAGCCGATC 1437
||||||| | |||| |||||||| |||| || ||||||||||||||||||||||||||
Sbjct 1394 TATAAACCCG-AGTTTCGTGGGCCTAAAAAACCGGTTCGTTTACATAGCAATAGCCGATC 1452
Query 1438 CTTGGCCCAAATGCAGTGGCATTGCGAAGGTAGATATACAAAACGGCACCGTTTCAGAGT 1497
| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1453 CCTGGCCCAAATGCAGTGGCATTGCGAAGGTAGATATAGAAAACGGCACCGTTTCACAGT 1512
Query 1498 TTAATTACGGACCGAG-CCGGTTCGGTGGAGAACCGTGCTTTGTACCGGAGGGAGAAGGA 1556
||||||||||||| || |||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1513 TTAATTACGGACC-AGGCCGGTTCGGTGGGGAACCGTACTTTGTACCGGAGGGAGAAGGA 1571
Query 1557 GAAGAAGACAAAGGTTATGTAATGGGGTTTGTGAGAGACGAAGAGAAAGACGAGTCGGAG 1616
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1572 GAAGAAGACAAAGGTTATGTGATGGGGTTTGTGAGAGACGAAGAGAAAGACGAGTCGGAG 1631
Query 1617 TTTGTGGTGGTCGACGCGACGGATATGAAGCAAGTCGCGGCGGTGCGCTTGCCGGAGAGG 1676
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1632 TTTGTGGTGGTCGACCCGACGGATATGAAGCAAGTCGCGGCGGTGCGCCTGCCGGAGAGG 1691
Query 1677 GTACCTTATGGTTTCCATGGAACGTTCGTGAGCGAGAATCAGTTGAAGGAACAAGTTTTC 1736
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1692 GTACCTTACGGTTTCCATGGAACGTTCGTGAGCGAGAATCAGTTAAAGGAACAAGTTTTC 1751
Query 1737 TGA 1739
|||
Sbjct 1752 TGA 1754
> Ahg356894 jgi|Araly1|356894|fgenesh1_pg.C_scaffold_8000681
Length=822
Score = 562 bits (304), Expect = 3e-159
Identities = 377/413 (91%), Gaps = 1/413 (0%)
Strand=Plus/Plus
Query 723 ATGTCAGAAGATGATCTTCCTTACCAAGTGAAGATCGACGGTCAAGGAGATCTTGAGACG 782
|||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1 ATGTCAGAGGATGATCTTCCTTACCAAGTGAAAATCAACGGTCAAGGAGATCTTGAGACA 60
Query 783 ATCGGACGGTTCGGATTCGATGACCAGATTGACTCTTCAGTGATAGCGCATCCTAAGGTG 842
||||||||||| ||||| ||||| |||||||||| || ||||||||| ||| ||||||||
Sbjct 61 ATCGGACGGTTTGGATTTGATGATCAGATTGACTGTTTAGTGATAGCTCATTCTAAGGTG 120
Query 843 GACGCGACCACAGGAGATCTCCATACACTGAGCTACAACGTTTTGAAGAAACCTCATCTC 902
||||| ||||||||||||||||| || ||||||||||| ||||||| |||||||||||||
Sbjct 121 GACGCTACCACAGGAGATCTCCACACTCTGAGCTACAATGTTTTGAGGAAACCTCATCTC 180
Query 903 AGGTATCTTAAATTCAACACGTGCGGGAAAAAGACACGTGACGTGGAGATCACGCTCCCT 962
| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 181 ATGTATCTTAAATTCGACACGTGCGGGAAAAAGACACGTGACGTGGACATCACGCTCCCG 240
Query 963 GAACCAACGATGATTCATGATTTCGCGATAACCGAGAATTTTGTCGTTATACCGGATCAG 1022
||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 241 GAACCAACGATGATTCATGATTTTGCGATAACCGAAAATTTTGTCGTCATACCGGATCAG 300
Query 1023 CAAATGGTATTCAAATTATCCGAAATGATTCGGGGCGGGTCACCCGTTATCTACGTTAAA 1082
|||||||||||||||||| |||||||||| |||||||||||||| |||||||| | ||||
Sbjct 301 CAAATGGTATTCAAATTAACCGAAATGATCCGGGGCGGGTCACCGGTTATCTATGATAAA 360
Query 1083 GAAAAAATGGCGAGATTTGGAGTTTTGTCAAAGCAGGATCTGACCGGGTCGGA 1135
|| |||||| ||||||| || |||||||||||||| ||| |||||| |||||
Sbjct 361 GAGAAAATGTCGAGATTCGGGGTTTTGTCAAAGCAA-ATCAGACCGGTTCGGA 412
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65248589685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5