BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24225.1
Length=327
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930454 jgi|Araly1|930454|scaffold_302911.1 351 1e-96
> Ahg930454 jgi|Araly1|930454|scaffold_302911.1
Length=269
Score = 351 bits (190), Expect = 1e-96
Identities = 230/249 (92%), Gaps = 3/249 (1%)
Strand=Plus/Plus
Query 82 TATTTGACCAAAAATAGACAAATGAAGATAAAGGGTTTGATGATATTGGCTTCTTCTCTC 141
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1 TATTTGACCAAAAATAGACAAATGATCATGAAGGGTTTGATGATATTGGCTTCTTCTCTC 60
Query 142 CTGATTCTTGCCTTCATTCATCAGTCGGAATCAGCTTCAATGCGGAGTTTGCTGATGAAT 201
|| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 61 CTAATTCTTGCCTTCATACATCACTCGGAATCAGCTTCAATGCGGAGTTTGCTGATGAAG 120
Query 202 AATGGATCATATGAAGAAGAAGAA-CA--AGTTCTAAAGTATGACTCCATGGGAACGATC 258
|||||||||||||||||||| ||| || |||| ||||||||||| | |||||||| |||
Sbjct 121 AATGGATCATATGAAGAAGACGAAGCACGAGTTTTAAAGTATGACACTATGGGAACCATC 180
Query 259 GCTAACTCTTCTGCTTTAGACTCAAAACGGGTAATTCCCACTGGTCCAAATCCACTCCAC 318
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||
Sbjct 181 GCTAACTCTTCTGCTTTAGACTCAAAAAGGGTTATTCCCACTGGTCCAAATCCACTTCAT 240
Query 319 AACAGGTAA 327
|||||||||
Sbjct 241 AACAGGTAA 249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11561143467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5