BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G24225.1 Length=327 Score E Sequences producing significant alignments: (Bits) Value Ahg930454 jgi|Araly1|930454|scaffold_302911.1 351 1e-96 > Ahg930454 jgi|Araly1|930454|scaffold_302911.1 Length=269 Score = 351 bits (190), Expect = 1e-96 Identities = 230/249 (92%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 82 TATTTGACCAAAAATAGACAAATGAAGATAAAGGGTTTGATGATATTGGCTTCTTCTCTC 141 ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 1 TATTTGACCAAAAATAGACAAATGATCATGAAGGGTTTGATGATATTGGCTTCTTCTCTC 60 Query 142 CTGATTCTTGCCTTCATTCATCAGTCGGAATCAGCTTCAATGCGGAGTTTGCTGATGAAT 201 || |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 61 CTAATTCTTGCCTTCATACATCACTCGGAATCAGCTTCAATGCGGAGTTTGCTGATGAAG 120 Query 202 AATGGATCATATGAAGAAGAAGAA-CA--AGTTCTAAAGTATGACTCCATGGGAACGATC 258 |||||||||||||||||||| ||| || |||| ||||||||||| | |||||||| ||| Sbjct 121 AATGGATCATATGAAGAAGACGAAGCACGAGTTTTAAAGTATGACACTATGGGAACCATC 180 Query 259 GCTAACTCTTCTGCTTTAGACTCAAAACGGGTAATTCCCACTGGTCCAAATCCACTCCAC 318 ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| || Sbjct 181 GCTAACTCTTCTGCTTTAGACTCAAAAAGGGTTATTCCCACTGGTCCAAATCCACTTCAT 240 Query 319 AACAGGTAA 327 ||||||||| Sbjct 241 AACAGGTAA 249 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 11561143467 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5