BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24230.1
Length=1481
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930453 jgi|Araly1|930453|scaffold_302910.1 2006 0.0
Ahg333008 jgi|Araly1|333008|fgenesh1_pm.C_scaffold_9000036 309 4e-83
> Ahg930453 jgi|Araly1|930453|scaffold_302910.1
Length=1395
Score = 2006 bits (1086), Expect = 0.0
Identities = 1254/1335 (94%), Gaps = 12/1335 (1%)
Strand=Plus/Plus
Query 71 TCATCTTCGTTG-GCTGCGTTCTCACAGCAACAAATCTCCGAAACAACGAAATCTCTCGA 129
|||||||||| | | || ||||||||||| || ||||| || ||||| ||||||||||||
Sbjct 66 TCATCTTCGTCGTG-TGTGTTCTCACAGCCACGAATCTTCGGAACAAGGAAATCTCTCGA 124
Query 130 TCGAGGAAGCTGAAAACAGAGGATTCAAAGAGCTTTAACAGTTCAC-CAATGACGACTAG 188
|| |||||||||||||||||||||||| |||||||||||||||| | ||||| |||||||
Sbjct 125 TCAAGGAAGCTGAAAACAGAGGATTCACAGAGCTTTAACAGTTC-CGCAATGGCGACTAG 183
Query 189 GCTTGATGGTGTAGTAGAGTTGAATGAACACGCAGTTACTGATCCAGACAAAGTTGCCCA 248
||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 184 GCTTGATGGTGTA--A-AGTTGAATGAACACGCAGTTACTGATCCAGACAAAGTTGCTCA 240
Query 249 TGAAGTCTCTAACCTTATTCACATGAGTGAACAGAACATCACTGCAAGGAGGAAGCTTGG 308
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGAGGTCTCTAAGCTTATTCACATGAGTGAACAGAACATCACTGCAAGGAGGAAGCTTGG 300
Query 309 CTTCTTTTCATGTGGAAATGGCAATCTAATAGATGATTGTTGGCGTTGCGACCGCAACTG 368
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATTCTTTTCTTGTGGAAATGGCAATCTAATAGATGATTGTTGGCGTTGCGACCGCAACTG 360
Query 369 GAACAAGAACCGTAAACACCTAGCGGATTGTGGGATGGGTTTTGGAAGTAAAGCGT-TTG 427
||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||
Sbjct 361 GAACAAGAACCGTAAACACCTCGCGGATTGTGGGATGGGTTTTGGAAGTAAAGC-TAATG 419
Query 428 GTGGTCGTAATGGAAGTTACTATGTGGTCACTGACCATAGTGATGATGACGTTGTGAATC 487
|||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct 420 GTGGTCGTAATGGAAGTTACTATGTGGTCACTGACCCGAGTGATGAGGACGTTGTAAATC 479
Query 488 CAAAGCCAGGAACTTTACGTCATGCCGTGATCCAGGTTGAACCATTATGGATCATCTTTA 547
||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct 480 CAAAGCCAGGAACTTTACGCCACGCCGTGATCCAGGTTGAGCCATTATGGATCATCTTTA 539
Query 548 AAAGAGACATGGTGATAAAGTTGAAACAAGAACTGATCATGAACAGTTTCAAAACCATTG 607
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 540 AAAGAGACATGGTGATAAAGTTGAAACAAGAACTGATCATGAACAGTTTCAAGACCATTG 599
Query 608 ATGCTCGTGGTGCCAATGTCCACATTGCCAATGGTGCTTGCATAACAATCCAAAATATAA 667
||||||||||||| || ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 600 ATGCTCGTGGTGCTAACGTCCATATTGCCAATGGTGCTTGCATAACAATCCAGTTTATAA 659
Query 668 CCAATGTTATCGTTCATGGCTTGCACATTCACGATTGCAAGAGAACCGGGAATGTAACTG 727
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 660 CCAATGTTATCATTCATGGCTTGCACATTCACGATTGCAAGAGAACGGGGAATGTAACTG 719
Query 728 TCAGAAGCTCGCCAAGTCAGGCCGGGTTTAGGGGAACGGCTGATGGTGATGCTATTAATA 787
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 720 TCAGAAGCTCACCAAGTCACACCGGGTTTAGGGGAACGGCTGATGGTGATGCTATTAATA 779
Query 788 TATTTGGGTCAAGTCATATTTGGATCGACCACAACTCGCTCTCTAACTGTACTGATGGTC 847
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 780 TATTTGGGTCAAGTCATATTTGGATCGACCACAACTCTCTCTCTCACTGTACTGATGGTC 839
Query 848 TTGTTGATGTTGTAAACGGTTCCACTGCCATTACCATTTCCAATAACCATTTCACTCACC 907
||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 840 TTGTTGATGTTGTCATGGGTTCTACTGCCATTACCATTTCCAATAACCATTTCACTCACC 899
Query 908 ACGATGAGGTGATGTTGCTAGGGCACAATGATTCGTACACACGAGACAAGATGATGCAAG 967
|||||||||||||||||||||||||||| || |||||||||| ||||||| |||||||||
Sbjct 900 ACGATGAGGTGATGTTGCTAGGGCACAAAGACTCGTACACACAAGACAAGCTGATGCAAG 959
Query 968 TGACAGTTGCGTATAACCATTTTGGAGAAGGGCTCATACAGAGAATGCCAAGGTGCAGGC 1027
||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 960 TGACAGTTGCGTACAACCATTTTGGAGAGGGGCTTATACAGAGAATGCCAAGGTGCAGGC 1019
Query 1028 ATGGTTATTTCCATGTGGTTAACAACGATTACACACATTGGAAAATGTATGCTATTGGAG 1087
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1020 ATGGTTATTTCCATGTGGTTAACAACGATTACACACACTGGAAAATGTATGCTGTTGGAG 1079
Query 1088 GAAGTGCAAACCCAACGATAAACAGTCAAGGCAATAGATTTGCTGCTCCCAAAAACCACT 1147
|||||||||||||||| |||||||||||||||||||||| |||||||||||| |||| ||
Sbjct 1080 GAAGTGCAAACCCAACTATAAACAGTCAAGGCAATAGATATGCTGCTCCCAATAACCGCT 1139
Query 1148 CCGCCAAGGAGGTGACAAAAAGATTAGACACAAAAGGTAATGAGTGGATGGAGTGGAATT 1207
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1140 CCGCCAAGGAGGTGACAAAAAGATTAGACACAAAAACAAATGAGTGGATGAAGTGGAATT 1199
Query 1208 GGAGATCAGAAAAAGACCTTCTAGTGAATGGAGCGTTTTTTACACCATCAGGTGAAGGAG 1267
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1200 GGAGATCAGAAAAAGACCTTCTAGTGAATGGAGCCTTTTTTACACCATCAGGGGAAGGAG 1259
Query 1268 CATCAGGAGACT---CACAAACTTTAAGCTTACCGGCTAAACCAGCTTCAATGGTCGACG 1324
|||||| ||||| |||||||||||||||||||||||||| |||| |||||||| |||
Sbjct 1260 CATCAGCAGACTATGCACAAACTTTAAGCTTACCGGCTAAATCAGCCTCAATGGTGGACT 1319
Query 1325 CAATCACTGCTAGTGCAGGTGCACTTAGTTGCCGTAGAGGCAAACCTTGCTACTAGTAAA 1384
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1320 CAATCACTGCTAGTGCAGGTGCACTTGGTTGCCGCAGAGGCAAACCTTGCTACTAGTAAA 1379
Query 1385 ACATTACTCTCTCAA 1399
|||| ||||||||||
Sbjct 1380 ACATCACTCTCTCAA 1394
> Ahg333008 jgi|Araly1|333008|fgenesh1_pm.C_scaffold_9000036
Length=1257
Score = 309 bits (167), Expect = 4e-83
Identities = 596/800 (75%), Gaps = 42/800 (5%)
Strand=Plus/Plus
Query 389 TAGCGGATTGTGGGATGGGTTTTGGAAGTAAAGC-GTTTGGTGGTCGTAATGGAAGTTAC 447
|||||| ||| | ||| ||||| ||| |||| || | |||| || ||| ||||| |||||
Sbjct 266 TAGCGGGTTGCGCGATTGGTTTCGGACGTAACGCAG-TTGGAGGCCGTGATGGACGTTAC 324
Query 448 TATGTGGTCACTGA-CCATAGTGATGATGACGTTGTGAATCCAAAGCCAGGAACTTTAC- 505
|| | || ||||| |||| |||| ||||| || || ||||| || || || | |
Sbjct 325 TACATTGTTACTGATCCAT-CTGATCATGACCCGGTTAACCCAAAACCCGGTACACTCCG 383
Query 506 GTCATGCCGTGATCCAGGTTGAACCATTATGGATCATCTTTAAAAGAGACATGGTGATAA 565
|| | || ||||| || | ||||| |||||||| | |||||| | |||||||| ||
Sbjct 384 GT-ACGCTGTGATACAAGACGAACCGCTATGGATCGTATTTAAACGTGACATGGTCAT-T 441
Query 566 AGTTGAA-ACAAGAACTGATCATGAACAGTTTCAAAACCATTGATGCTCGTGGTGCCAAT 624
| || || |||||||| |||||||| || |||||||| ||||||| |||||| | ||
Sbjct 442 ACTTTAAGCCAAGAACTAATCATGAATAGCTTCAAAACGATTGATGGTCGTGGCGTGAAC 501
Query 625 GTCCACATTGCCAATGGTGCTTGCATAACAATCCAAAATATAACCAATGTTATCGTTCAT 684
|| || || || |||||| || || || || || | | || ||| ||||| | |||
Sbjct 502 GTACATATAGCTGGTGGTGCATGTATCACGATTCAGTACGTTACGAATATTATCATCCAT 561
Query 685 -GGCTTGCACATTCACGATTGCAAGAGAACCGGGAATG-TAACT-G-TCAGAAGCTCGCC 740
|| || | ||||||||||| ||| |||| || || | | | | | || | || |||
Sbjct 562 GGGATT-AATATTCACGATTGTAAGCGAACTGGTAACGCT-A-TGGTTC-GGAGTTCG-G 616
Query 741 A-AGTCAGGCCGGGTTTAGGGGAAC---GGCTGATGGTGAT--GCTATTAATATATTTGG 794
| ||||| || || || |||| ||||||||||||| | ||| || | |||||
Sbjct 617 AGAGTCA-TTATGG-TT-GGAGAACTATGGCTGATGGTGATGGGATATCGAT-T-TTTGG 671
Query 795 GTCAAGTCATATTTGGATCGACCACAACTCGCTCTCTAACTGTACTGATGGTCTTG-TTG 853
|| |||||||||||||| || || || || || || || ||| ||||||| ||| | |
Sbjct 672 ATCGAGTCATATTTGGATTGATCATAATTCTCTTTCGAATTGTGCTGATGG-ATTGATAG 730
Query 854 ATGTTGTAAACGGTTCCACTGCCATTACCATTTCCAATAACCATTTCACTCACCACGATG 913
||| | | || || ||||| |||||||| || ||||| || ||||||||||| |||
Sbjct 731 ATGCAATTATGGGATCTACTGCTATTACCATCTCTAATAATTATCTCACTCACCACAATG 790
Query 914 AGG-TGATGTTGCTAGGGCACAATGATTCGTACA-CACGAGACAAGATGATGCAAGTGA- 970
||| | || ||| | ||||| | ||||| |||| || ||||||| ||||||||||| |
Sbjct 791 AGGCT-ATTTTGTTGGGGCATACCGATTCATACACCA-GAGACAAAATGATGCAAGTAAC 848
Query 971 CAGTTGCGTATAACCATTTTGGAGAAGGG-CTCATACAGAGAATGCCAAGGTGCAGGCAT 1029
|| |||| || ||||||||||||| |||| || ||||||||||||||||||||||||||
Sbjct 849 CA-TTGCATACAACCATTTTGGAG-AGGGTCTTGTACAGAGAATGCCAAGGTGCAGGCAT 906
Query 1030 GGTTATTTCCATGTGGTTAACAACGATTACACACATTGGAAAATGTATGCTATTGGAGGA 1089
|| || |||||||| || |||||||||||||| || ||| ||||||||| ||||| |||
Sbjct 907 GGATACTTCCATGTAGTAAACAACGATTACACTCACTGGGTAATGTATGCAATTGGTGGA 966
Query 1090 AGTGCAAACCCAACGATAAACAGTCAAGGCAATAGATTTGCT-GCTCCCAA-AAACCACT 1147
||||| || || || || || |||||||| || | || || || ||| ||||| |
Sbjct 967 AGTGCTAATCCTACCATCAATAGTCAAGGAAACCGGTTC-CTTGC-CCCGGGAAACCGTT 1024
Query 1148 CCGCCAAGGAGGTGACAAAA 1167
||| ||||||||||| |||
Sbjct 1025 TCGCTAAGGAGGTGACGAAA 1044
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55421306475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5