BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G24230.1 Length=1481 Score E Sequences producing significant alignments: (Bits) Value Ahg930453 jgi|Araly1|930453|scaffold_302910.1 2006 0.0 Ahg333008 jgi|Araly1|333008|fgenesh1_pm.C_scaffold_9000036 309 4e-83 > Ahg930453 jgi|Araly1|930453|scaffold_302910.1 Length=1395 Score = 2006 bits (1086), Expect = 0.0 Identities = 1254/1335 (94%), Gaps = 12/1335 (1%) Strand=Plus/Plus Query 71 TCATCTTCGTTG-GCTGCGTTCTCACAGCAACAAATCTCCGAAACAACGAAATCTCTCGA 129 |||||||||| | | || ||||||||||| || ||||| || ||||| |||||||||||| Sbjct 66 TCATCTTCGTCGTG-TGTGTTCTCACAGCCACGAATCTTCGGAACAAGGAAATCTCTCGA 124 Query 130 TCGAGGAAGCTGAAAACAGAGGATTCAAAGAGCTTTAACAGTTCAC-CAATGACGACTAG 188 || |||||||||||||||||||||||| |||||||||||||||| | ||||| ||||||| Sbjct 125 TCAAGGAAGCTGAAAACAGAGGATTCACAGAGCTTTAACAGTTC-CGCAATGGCGACTAG 183 Query 189 GCTTGATGGTGTAGTAGAGTTGAATGAACACGCAGTTACTGATCCAGACAAAGTTGCCCA 248 ||||||||||||| | |||||||||||||||||||||||||||||||||||||||| || Sbjct 184 GCTTGATGGTGTA--A-AGTTGAATGAACACGCAGTTACTGATCCAGACAAAGTTGCTCA 240 Query 249 TGAAGTCTCTAACCTTATTCACATGAGTGAACAGAACATCACTGCAAGGAGGAAGCTTGG 308 ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TGAGGTCTCTAAGCTTATTCACATGAGTGAACAGAACATCACTGCAAGGAGGAAGCTTGG 300 Query 309 CTTCTTTTCATGTGGAAATGGCAATCTAATAGATGATTGTTGGCGTTGCGACCGCAACTG 368 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 ATTCTTTTCTTGTGGAAATGGCAATCTAATAGATGATTGTTGGCGTTGCGACCGCAACTG 360 Query 369 GAACAAGAACCGTAAACACCTAGCGGATTGTGGGATGGGTTTTGGAAGTAAAGCGT-TTG 427 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| | || Sbjct 361 GAACAAGAACCGTAAACACCTCGCGGATTGTGGGATGGGTTTTGGAAGTAAAGC-TAATG 419 Query 428 GTGGTCGTAATGGAAGTTACTATGTGGTCACTGACCATAGTGATGATGACGTTGTGAATC 487 |||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||| Sbjct 420 GTGGTCGTAATGGAAGTTACTATGTGGTCACTGACCCGAGTGATGAGGACGTTGTAAATC 479 Query 488 CAAAGCCAGGAACTTTACGTCATGCCGTGATCCAGGTTGAACCATTATGGATCATCTTTA 547 ||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||| Sbjct 480 CAAAGCCAGGAACTTTACGCCACGCCGTGATCCAGGTTGAGCCATTATGGATCATCTTTA 539 Query 548 AAAGAGACATGGTGATAAAGTTGAAACAAGAACTGATCATGAACAGTTTCAAAACCATTG 607 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 540 AAAGAGACATGGTGATAAAGTTGAAACAAGAACTGATCATGAACAGTTTCAAGACCATTG 599 Query 608 ATGCTCGTGGTGCCAATGTCCACATTGCCAATGGTGCTTGCATAACAATCCAAAATATAA 667 ||||||||||||| || ||||| ||||||||||||||||||||||||||||| ||||| Sbjct 600 ATGCTCGTGGTGCTAACGTCCATATTGCCAATGGTGCTTGCATAACAATCCAGTTTATAA 659 Query 668 CCAATGTTATCGTTCATGGCTTGCACATTCACGATTGCAAGAGAACCGGGAATGTAACTG 727 ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 660 CCAATGTTATCATTCATGGCTTGCACATTCACGATTGCAAGAGAACGGGGAATGTAACTG 719 Query 728 TCAGAAGCTCGCCAAGTCAGGCCGGGTTTAGGGGAACGGCTGATGGTGATGCTATTAATA 787 |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 720 TCAGAAGCTCACCAAGTCACACCGGGTTTAGGGGAACGGCTGATGGTGATGCTATTAATA 779 Query 788 TATTTGGGTCAAGTCATATTTGGATCGACCACAACTCGCTCTCTAACTGTACTGATGGTC 847 ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 780 TATTTGGGTCAAGTCATATTTGGATCGACCACAACTCTCTCTCTCACTGTACTGATGGTC 839 Query 848 TTGTTGATGTTGTAAACGGTTCCACTGCCATTACCATTTCCAATAACCATTTCACTCACC 907 ||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 840 TTGTTGATGTTGTCATGGGTTCTACTGCCATTACCATTTCCAATAACCATTTCACTCACC 899 Query 908 ACGATGAGGTGATGTTGCTAGGGCACAATGATTCGTACACACGAGACAAGATGATGCAAG 967 |||||||||||||||||||||||||||| || |||||||||| ||||||| ||||||||| Sbjct 900 ACGATGAGGTGATGTTGCTAGGGCACAAAGACTCGTACACACAAGACAAGCTGATGCAAG 959 Query 968 TGACAGTTGCGTATAACCATTTTGGAGAAGGGCTCATACAGAGAATGCCAAGGTGCAGGC 1027 ||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 960 TGACAGTTGCGTACAACCATTTTGGAGAGGGGCTTATACAGAGAATGCCAAGGTGCAGGC 1019 Query 1028 ATGGTTATTTCCATGTGGTTAACAACGATTACACACATTGGAAAATGTATGCTATTGGAG 1087 ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| Sbjct 1020 ATGGTTATTTCCATGTGGTTAACAACGATTACACACACTGGAAAATGTATGCTGTTGGAG 1079 Query 1088 GAAGTGCAAACCCAACGATAAACAGTCAAGGCAATAGATTTGCTGCTCCCAAAAACCACT 1147 |||||||||||||||| |||||||||||||||||||||| |||||||||||| |||| || Sbjct 1080 GAAGTGCAAACCCAACTATAAACAGTCAAGGCAATAGATATGCTGCTCCCAATAACCGCT 1139 Query 1148 CCGCCAAGGAGGTGACAAAAAGATTAGACACAAAAGGTAATGAGTGGATGGAGTGGAATT 1207 ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct 1140 CCGCCAAGGAGGTGACAAAAAGATTAGACACAAAAACAAATGAGTGGATGAAGTGGAATT 1199 Query 1208 GGAGATCAGAAAAAGACCTTCTAGTGAATGGAGCGTTTTTTACACCATCAGGTGAAGGAG 1267 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 1200 GGAGATCAGAAAAAGACCTTCTAGTGAATGGAGCCTTTTTTACACCATCAGGGGAAGGAG 1259 Query 1268 CATCAGGAGACT---CACAAACTTTAAGCTTACCGGCTAAACCAGCTTCAATGGTCGACG 1324 |||||| ||||| |||||||||||||||||||||||||| |||| |||||||| ||| Sbjct 1260 CATCAGCAGACTATGCACAAACTTTAAGCTTACCGGCTAAATCAGCCTCAATGGTGGACT 1319 Query 1325 CAATCACTGCTAGTGCAGGTGCACTTAGTTGCCGTAGAGGCAAACCTTGCTACTAGTAAA 1384 |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 1320 CAATCACTGCTAGTGCAGGTGCACTTGGTTGCCGCAGAGGCAAACCTTGCTACTAGTAAA 1379 Query 1385 ACATTACTCTCTCAA 1399 |||| |||||||||| Sbjct 1380 ACATCACTCTCTCAA 1394 > Ahg333008 jgi|Araly1|333008|fgenesh1_pm.C_scaffold_9000036 Length=1257 Score = 309 bits (167), Expect = 4e-83 Identities = 596/800 (75%), Gaps = 42/800 (5%) Strand=Plus/Plus Query 389 TAGCGGATTGTGGGATGGGTTTTGGAAGTAAAGC-GTTTGGTGGTCGTAATGGAAGTTAC 447 |||||| ||| | ||| ||||| ||| |||| || | |||| || ||| ||||| ||||| Sbjct 266 TAGCGGGTTGCGCGATTGGTTTCGGACGTAACGCAG-TTGGAGGCCGTGATGGACGTTAC 324 Query 448 TATGTGGTCACTGA-CCATAGTGATGATGACGTTGTGAATCCAAAGCCAGGAACTTTAC- 505 || | || ||||| |||| |||| ||||| || || ||||| || || || | | Sbjct 325 TACATTGTTACTGATCCAT-CTGATCATGACCCGGTTAACCCAAAACCCGGTACACTCCG 383 Query 506 GTCATGCCGTGATCCAGGTTGAACCATTATGGATCATCTTTAAAAGAGACATGGTGATAA 565 || | || ||||| || | ||||| |||||||| | |||||| | |||||||| || Sbjct 384 GT-ACGCTGTGATACAAGACGAACCGCTATGGATCGTATTTAAACGTGACATGGTCAT-T 441 Query 566 AGTTGAA-ACAAGAACTGATCATGAACAGTTTCAAAACCATTGATGCTCGTGGTGCCAAT 624 | || || |||||||| |||||||| || |||||||| ||||||| |||||| | || Sbjct 442 ACTTTAAGCCAAGAACTAATCATGAATAGCTTCAAAACGATTGATGGTCGTGGCGTGAAC 501 Query 625 GTCCACATTGCCAATGGTGCTTGCATAACAATCCAAAATATAACCAATGTTATCGTTCAT 684 || || || || |||||| || || || || || | | || ||| ||||| | ||| Sbjct 502 GTACATATAGCTGGTGGTGCATGTATCACGATTCAGTACGTTACGAATATTATCATCCAT 561 Query 685 -GGCTTGCACATTCACGATTGCAAGAGAACCGGGAATG-TAACT-G-TCAGAAGCTCGCC 740 || || | ||||||||||| ||| |||| || || | | | | | || | || ||| Sbjct 562 GGGATT-AATATTCACGATTGTAAGCGAACTGGTAACGCT-A-TGGTTC-GGAGTTCG-G 616 Query 741 A-AGTCAGGCCGGGTTTAGGGGAAC---GGCTGATGGTGAT--GCTATTAATATATTTGG 794 | ||||| || || || |||| ||||||||||||| | ||| || | ||||| Sbjct 617 AGAGTCA-TTATGG-TT-GGAGAACTATGGCTGATGGTGATGGGATATCGAT-T-TTTGG 671 Query 795 GTCAAGTCATATTTGGATCGACCACAACTCGCTCTCTAACTGTACTGATGGTCTTG-TTG 853 || |||||||||||||| || || || || || || || ||| ||||||| ||| | | Sbjct 672 ATCGAGTCATATTTGGATTGATCATAATTCTCTTTCGAATTGTGCTGATGG-ATTGATAG 730 Query 854 ATGTTGTAAACGGTTCCACTGCCATTACCATTTCCAATAACCATTTCACTCACCACGATG 913 ||| | | || || ||||| |||||||| || ||||| || ||||||||||| ||| Sbjct 731 ATGCAATTATGGGATCTACTGCTATTACCATCTCTAATAATTATCTCACTCACCACAATG 790 Query 914 AGG-TGATGTTGCTAGGGCACAATGATTCGTACA-CACGAGACAAGATGATGCAAGTGA- 970 ||| | || ||| | ||||| | ||||| |||| || ||||||| ||||||||||| | Sbjct 791 AGGCT-ATTTTGTTGGGGCATACCGATTCATACACCA-GAGACAAAATGATGCAAGTAAC 848 Query 971 CAGTTGCGTATAACCATTTTGGAGAAGGG-CTCATACAGAGAATGCCAAGGTGCAGGCAT 1029 || |||| || ||||||||||||| |||| || |||||||||||||||||||||||||| Sbjct 849 CA-TTGCATACAACCATTTTGGAG-AGGGTCTTGTACAGAGAATGCCAAGGTGCAGGCAT 906 Query 1030 GGTTATTTCCATGTGGTTAACAACGATTACACACATTGGAAAATGTATGCTATTGGAGGA 1089 || || |||||||| || |||||||||||||| || ||| ||||||||| ||||| ||| Sbjct 907 GGATACTTCCATGTAGTAAACAACGATTACACTCACTGGGTAATGTATGCAATTGGTGGA 966 Query 1090 AGTGCAAACCCAACGATAAACAGTCAAGGCAATAGATTTGCT-GCTCCCAA-AAACCACT 1147 ||||| || || || || || |||||||| || | || || || ||| ||||| | Sbjct 967 AGTGCTAATCCTACCATCAATAGTCAAGGAAACCGGTTC-CTTGC-CCCGGGAAACCGTT 1024 Query 1148 CCGCCAAGGAGGTGACAAAA 1167 ||| ||||||||||| ||| Sbjct 1025 TCGCTAAGGAGGTGACGAAA 1044 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55421306475 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5