BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G24250.1

Length=703
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg930451 jgi|Araly1|930451|scaffold_302908.1                        656    0.0  


> Ahg930451 jgi|Araly1|930451|scaffold_302908.1
Length=455

 Score =  656 bits (355),  Expect = 0.0
 Identities = 419/450 (93%), Gaps = 4/450 (1%)
 Strand=Plus/Plus

Query  59   CGATAGAGCTAAACAAAATGGCAATGAGGTTCTCATCACTTACTAAAATCGTGCTTCTCT  118
            |||||| |||||||||||||||||||| |||||||||| | || ||||||||||||||||
Sbjct  5    CGATAGTGCTAAACAAAATGGCAATGATGTTCTCATCAGTCACCAAAATCGTGCTTCTCT  64

Query  119  CTGCAGCTATGTTGCTTTTGGTCCACGCAAGTGCTCGCACTTTACAGCAAACTCA-GACT  177
             |||||||| ||||||||||||||||||||||||||||||||| ||||||||||| || |
Sbjct  65   TTGCAGCTACGTTGCTTTTGGTCCACGCAAGTGCTCGCACTTTGCAGCAAACTCAGGA-T  123

Query  178  CTGCCTCTCCAAGGAGGAG-GAGCTGCTCCTACCAAAGATGAGCCTCATATGGTTAATGC  236
             |||||||||| |||||||  | ||||||||||||| | |||| ||| |||||| |||||
Sbjct  124  TTGCCTCTCCATGGAGGAGTCA-CTGCTCCTACCAAGGCTGAGTCTCCTATGGTCAATGC  182

Query  237  CCCTCTTGAGGACCAGAAGAACTTCATCTACGGCGGTGGAATTGGCGGTGTTGCCGGAGT  296
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  183  CCCTCTTGAGGACCAGAAGAACTTCATCTACGGCGGTGGAATTGGTGGTGTTGCCGGAGT  242

Query  297  TGGTGGATTCATGGGGATGCCAGGTGGTGGAAGTGGTGGCTCTGGCATGACTTTCCCACT  356
            |||||||||| | ||||||||||||||||||||||||||| | |||||||| || |||||
Sbjct  243  TGGTGGATTCCTAGGGATGCCAGGTGGTGGAAGTGGTGGCACCGGCATGACATTGCCACT  302

Query  357  CCCGAGTGGGACGCCGCTTCTtggtggggctggtgggcttggtggtttgggtggtgcaat  416
            |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct  303  CCCGAGTGGGACGCCGCTCCTTGGTGGGGCTGGTGGGCTTGGTGGTTTAGGTGGTGCAAT  362

Query  417  ggggttccctggtggactcggtggtggacctagtggtggtggtgTTCCAAGTTCAAGCGG  476
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  363  GGGGTTCCCTGGTGGACTCGGTGGTGGACCTAGTGGTGGTGGTGTTCCAAGCTCAAGCGG  422

Query  477  TGGTTCTCCTTAAGACAGATCATGATGATT  506
            |||||||||||||||||||||| |||||||
Sbjct  423  TGGTTCTCCTTAAGACAGATCAAGATGATT  452



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25847337726


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5