BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24260.1
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930448 jgi|Araly1|930448|scaffold_302905.1 931 0.0
> Ahg930448 jgi|Araly1|930448|scaffold_302905.1
Length=1196
Score = 931 bits (504), Expect = 0.0
Identities = 890/1070 (83%), Gaps = 51/1070 (5%)
Strand=Plus/Plus
Query 89 TACTCAGAAATCCCGAACTCACTAGAGAACTTAGGAGGCTT-AAAGACAATAACCTTAAT 147
||||| |||| | ||||| |||||||| |||| |||| || ||||| ||| ||| |
Sbjct 124 TACTCGGAAAGACAGAACTAACTAGAGATCTTACGAGG-TTAAAAGAAAATCTTCTTGCT 182
Query 148 CGAAAGATTGATCATGATGAGAAGCCGGAAGAGAACCCTATTCTTCTTAATGAACCAAAG 207
||||||||||| | |||||||||||| |||| ||||||| |||||||||| ||||||
Sbjct 183 CGAAAGATTGA-C--GATGAGAAGCCGAAAGAAAACCCTA---TTCTTAATGATCCAAAG 236
Query 208 ATGATACCTCGTATACGGA-TA-G-TT----T-A-T-A-AA-CCTAAAGACGATGTGGAG 255
| | ||| |||||| || || | || | | | | || |||||||| |||||||||
Sbjct 237 GTTAGACCCCGTATAAAGATTAGGTTTAAACTGATTGATAACCCTAAAGAAGATGTGGAG 296
Query 256 AGAAAGATG-AAGGACCGTTTAGAAGCGAAACAGAAGTTGACAGAGTTATTGAAGGCTAT 314
||||||| | || | || ||||||||||||||||||||||| |||||||||| |||||
Sbjct 297 AGAAAGAAGAAAAG-CCACTTAGAAGCGAAACAGAAGTTGACTGAGTTATTGATGGCTAC 355
Query 315 CGAGGAGAGACTAACTCGGTCGGAATTGAGAGTTTACACTTGCTTGTGTAAAGACTTTAA 374
|||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 356 CGAGAAGAAACTAACTCGGTCGGAATTGAGAGTTTACACTAACTTGTGTAAAGACTTTAG 415
Query 375 GTCTCATAGAATCGATTACAGCCAATTCGTTAAGTCTCTTCAACGTTTGATCGATAAATA 434
|||||||| ||||| ||| ||| ||||||||| |||||||| ||||||| |||| |||||
Sbjct 416 GTCTCATAAAATCGCTTATAGCGAATTCGTTACGTCTCTTCTACGTTTGGTCGAGAAATA 475
Query 435 CAAGAATCTTTATCAACGGTTCGTAGACATTGCCTACGGTCATGGAGAAGATGAGGCTGG 494
|||||||||||||||||||||||| || ||| |||||||| || |||||||||||||||
Sbjct 476 CAAGAATCTTTATCAACGGTTCGTGGAAATTCCCTACGGTGATAAAGAAGATGAGGCTGG 535
Query 495 A-A--C--TA----GGGTTAAAGTTGATGATAACCCCCAAGACACAGAGTCGGATAAGAT 545
| | | || |||||||||| ||||| ||||| ||||| ||||||| |||||||||
Sbjct 536 AGAAACCCTAACTAGGGTTAAAGTAGATGAGAACCCGCAAGAAACAGAGTTGGATAAGAT 595
Query 546 CAAGTTGGAGGGAAAGGGGAAGAGAGGAATGTTGCCTCCAAAGGAATCAGA-CCAACCTG 604
||| |||||||||||| |||||||||||||||||| |||| | ||||| || ||||||||
Sbjct 596 CAATTTGGAGGGAAAGAGGAAGAGAGGAATGTTGCTTCCACATGAATC-GAACCAACCTG 654
Query 605 AGAGACCTCTGAAGAAAAGGAGAAAGACTGAAC-GAGCGACACCTAACTATAAGCTAATT 663
|||||||| ||||||||||||||| | |||||| | |||||||||||||| ||| ||
Sbjct 655 AGAGACCTATGAAGAAAAGGAGAACGTCTGAACTGTT-GACACCTAACTATAGGCTTATC 713
Query 664 CCCAAGG-AAGAACAGACACCGGTCTCGTCTACAGTACTAAACAACACTTGGGTTGTGAA 722
||||||| || |||||| ||||||||| ||| | ||||||||||||||||| | ||||||
Sbjct 714 CCCAAGGCAA-AACAGAGACCGGTCTCATCTTCGGTACTAAACAACACTTGTGCTGTGAA 772
Query 723 CAGTTATGATATCCAGGCACAG-AAGAACCTAACCGATATCGAAAAAGATATGTACAACT 781
|| ||| || |||||| | | ||||| ||||||||||||||| |||||| |||||| |
Sbjct 773 GAGATATAATTTCCAGGGAT-GTAAGAATCTAACCGATATCGAAGAAGATAGGTACAAAT 831
Query 782 GGGAAGATCAGATGTTCGAG-CTAGATATGTTGGTGGGATTTCTAACAAGTGCAGCGAAG 840
| |||||||||||||||||| | |||| |||| ||||| |||||| || ||||| | ||
Sbjct 832 GCGAAGATCAGATGTTCGAGGC-AGATGTGTTAATGGGAGTTCTAAGAACTGCAGTGGAG 890
Query 841 AATGCAGAGGAAGTTATTAACGGAGAGAGGG-ACCTGAAAGATCTTGGAGGGAAGTTCTA 899
||||| |||||||| |||| ||||| | || | || |||||||||||| ||||||||
Sbjct 891 AATGCGGAGGAAGTAATTAGGGGAGATATGGTAT-TGGAAGATCTTGGAGAAAAGTTCTA 949
Query 900 CAGATGTGCAGAAAATT-TATATGGTAGAGATATGCT-TGAAATAGTGAAAGAAAATCAT 957
|||||||| |||| | | |||||| |||||||| | ||||||||||| |||||||||
Sbjct 950 CAGATGTGTGGAAA-TGATGTATGGTGGAGATATG-TATGAAATAGTGACAGAAAATCAC 1007
Query 958 CAAAGAGTTTTACCTGCGATCTTGAACCGGTTGAATCAGAAACTGCGCGAGGTCACT-CT 1016
||||||| ||| |||| |||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 1008 CAAAGAGCTTTCCCTGTGATCTTAAACCGGTTGAATCAGAAACTGCGTGAGGTCACGGCT 1067
Query 1017 TGTAAGAGAAAGATTGAAACCTGTCTTGAAGCAAACGATTGAAAAACTTTCTACAAGGCA 1076
|||||||||| ||||||||||||| ||||||||| |||||||||||||||| || |||
Sbjct 1068 C-TAAGAGAAAGCTTGAAACCTGTCTGGAAGCAAACTATTGAAAAACTTTCTAAAAAGCA 1126
Query 1077 AAGAG-GTTCCACTGCACAAGAATCTCAAGTGAAGACAAGAACAATCTGA 1125
||| | || ||| ||||||||| | | ||||||||| || || |||||||
Sbjct 1127 AAGTGAGT-CCATTGCACAAGACTGTGAAGTGAAGAAAACAAAAATCTGA 1175
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41935208700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5