BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24280.1
Length=468
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930517 jgi|Araly1|930517|scaffold_302974.1 239 2e-62
> Ahg930517 jgi|Araly1|930517|scaffold_302974.1
Length=277
Score = 239 bits (129), Expect = 2e-62
Identities = 231/278 (83%), Gaps = 16/278 (6%)
Strand=Plus/Plus
Query 8 CACGCAAAGGAAGCGAAACGATGGATAGATATTGG-GAACAAGACCCGATGAGGCCGATG 66
||||||||||||||||| ||||||||||||||||| | || |||||||| ||||||||||
Sbjct 1 CACGCAAAGGAAGCGAAGCGATGGATAGATATTGGCG-ACGAGACCCGAGGAGGCCGATG 59
Query 67 GTGTACCGTGACTTTCTGGGTGAGATGGAGTATCCAGGATACTCGATGCCTATGCAGATG 126
|| | |||||||||| ||||||||| ||| |||||| |||||||||||||||||||
Sbjct 60 ATGCAGTATGACTTTCTGAATGAGATGGAATATTCAGGATCCTCGATGCCTATGCAGATG 119
Query 127 GAGATCGATGAAGACGACTTCGGGCCCATGGATATGCAGTTTGAAGTTGGAGGAATTTC- 185
||||||||||| || |||||| ||||||| | | |||||||| |||||| | |||
Sbjct 120 GAGATCGATGATGATGACTTCTACCCCATGG--A-GTTGTTTGAAGGTGGAGG-ACTTCT 175
Query 186 ACCCT-TTCAAATGAAGCCCGAAGACAGCGA-TTTC-TTCAACAAGTTCGAGGATGATTT 242
| ||| |||| |||||| || ||| | | |||| ||| |||| ||||||||||||||
Sbjct 176 ATCCTCCCCAAA-GAAGCCTGATTACA-CCATTTTCTTTC-ACAAATTCGAGGATGATTT 232
Query 243 TGATGATTCCGATATCAATT-AGTTTCGATCATT-CTC 278
|||||||||||||||||||| | ||||||| ||| |||
Sbjct 233 TGATGATTCCGATATCAATTGA-TTTCGATTATTTCTC 269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16941081516
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5