BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G24290.1 Length=1491 Score E Sequences producing significant alignments: (Bits) Value Ahg930518 jgi|Araly1|930518|scaffold_302975.1 2252 0.0 Ahg479942 jgi|Araly1|479942|fgenesh2_kg.3__2643__AT3G24300.1 1663 0.0 > Ahg930518 jgi|Araly1|930518|scaffold_302975.1 Length=1531 Score = 2252 bits (1219), Expect = 0.0 Identities = 1400/1490 (94%), Gaps = 2/1490 (0%) Strand=Plus/Plus Query 1 ATGTCAGGAGCTATTACTTGCTCTGCGGCTGATCTCTCAGCCCTACTCGGCCCAAATGCC 60 ||||| |||||||| ||||||||||| ||||||||||| |||||||||||||| ||||| Sbjct 21 ATGTCGGGAGCTATAACTTGCTCTGCAGCTGATCTCTCTGCCCTACTCGGCCCCAATGCA 80 Query 61 ACGGCAGCGGCTGACTACATTTGCGGCCAGTTGGGTTCCGTTAACAACAAGTTTACCGAT 120 || || |||||| |||||||||||||||| |||||| ||||||||||||||||||||||| Sbjct 81 ACCGCGGCGGCTAACTACATTTGCGGCCAATTGGGTACCGTTAACAACAAGTTTACCGAT 140 Query 121 GCAGCCTACGCTATAGACAACACGTACCTCCTCTTCTCTGCCTATCTTGTCTTTGCGATG 180 ||||||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||| Sbjct 141 GCAGCCTACGCTATAGACAACACTTACCTCCTCTTCTCCGCCTATCTCGTCTTCGCGATG 200 Query 181 CAGCTCGGCTTCGCTATGCTTTGTGCTGGCTCCGTTAGAGCTAAGAACACGATGAACATC 240 ||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 201 CAGCTTGGTTTCGCTATGCTTTGTGCTGGCTCCGTTAGAGCCAAGAACACGATGAACATC 260 Query 241 ATGCTCACTAATGTCCTTGATGCTGCAGCCGGAGGACTCTTCTACTACCTCTTTGGTTAT 300 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 261 ATGCTCACTAATGTCCTTGATGCTGCAGCTGGAGGACTCTTCTACTATCTCTTTGGTTAT 320 Query 301 GCATTTGCCTTTGGTGAATCCTCCGATGGATTCATTGGAAGACACAACTTTGGTCTTCAA 360 || ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||| || Sbjct 321 GCCTTTGCCTTTGGCGAATCCTCTGATGGATTCATCGGAAGACACAACTTTGGTCTTAAA 380 Query 361 AACTTTCCGACTCTCACCTCGGATTACTCCTTCTTCCTCTACCAATGGGCGTTTGCAATC 420 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||| Sbjct 381 AACTTTCCGACTCTCACTTCGGATTACTCCTTCTTCCTCTACCAATGGGCCTTTGCTATC 440 Query 421 GCAGCCGCTGGAATCACCAGCGGCTCCATTGCCGAGAGGACTAAGTTCGTGGCGTATTTG 480 || |||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 441 GCCGCCGCTGGAATCACCAGCGGTTCGATTGCCGAGAGGACTAAGTTCGTGGCGTATTTG 500 Query 481 ATATACTCTTCTTTTTTGACCGGGTTTGTTTACCCAGTTGTCTCTCACTGGTTCTGGTCT 540 ||||||||||||||||||||||||||||||||||| || || |||||||||||||||||| Sbjct 501 ATATACTCTTCTTTTTTGACCGGGTTTGTTTACCCGGTCGTTTCTCACTGGTTCTGGTCT 560 Query 541 CCGGATGGATGGGCTAGTCCCTTCCGTTCAGAAGACCGTTTGTTTGGCACTGGAGCCATC 600 ||||| |||||||||||||| || |||||||||||||||||||||||||| ||||||||| Sbjct 561 CCGGACGGATGGGCTAGTCCGTTTCGTTCAGAAGACCGTTTGTTTGGCACCGGAGCCATC 620 Query 601 GACTTTGCTGGGTCAGGTGTTGTTCACATGGTTGGTGGTATCGCAGGATTATGGGGTGCC 660 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 621 GACTTTGCGGGGTCAGGTGTTGTTCACATGGTTGGTGGTATCGCTGGATTATGGGGAGCC 680 Query 661 CTTATTGAAGGCCCTCGGATTGGTCGGTTTCCTGATGGGGGTCATGCTATTGCTCTGCGA 720 ||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 681 CTTATCGAAGGTCCTCGGATTGGCCGGTTCCCTGATGGGGGTCATGCTATTGCTCTGCGC 740 Query 721 GGCCACTCTGCCTCACTCGTCGTCTTAGGGACCTTCCTTCTCTGGTTTGGTTGGTACGGG 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 741 GGCCACTCTGCCTCACTCGTCGTCTTAGGGACCTTCCTTCTCTGGTTTGGTTGGTATGGG 800 Query 781 TTCAACCCTGGTTCCTTCACCAAGATACTCATTCCCTACAATTCTGGTTCCAACTATGGC 840 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 801 TTCAACCCTGGTTCCTTCACCAAGATACTCATTCCTTACAATTCTGGATCCAACTATGGC 860 Query 841 CAATGGAGTGGAATAGGCCGCACCGCGGTTACAACTACACTCTCGGGATGCACAGCGGCT 900 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 861 CAATGGAGTGGAATAGGCCGCACGGCGGTTACAACTACACTCTCGGGATGCACAGCGGCT 920 Query 901 CTAACCACACTCTTCGGAAAACGTCTCCTATCAGGCCACTGGAACGTAACTGACGTTTGC 960 |||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 921 CTAACCACCCTCTTCGGAAAACGTCTCCTATCAGGCCACTGGAACGTAACCGATGTTTGC 980 Query 961 AACGGGTTACTCGGAGGGTTTGCGGCCATAACGGCAGGTTGCTCTGTGGTTGATCCATGG 1020 ||||| ||||| || ||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 981 AACGGTTTACTTGGCGGGTTTGCGGCCATAACCGCAGGTTGCTCCGTGGTTGATCCATGG 1040 Query 1021 GCAGCGATCGTATGTGGCTTCGTGGCTTCCCTCGTCCTTATCGGATGCAACAAGCTCGCA 1080 |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1041 GCAGCGATCGTATGCGGCTTCATGGCTTCCCTCGTCCTTATCGGATGCAACAAGCTCGCG 1100 Query 1081 GAGCTCTTAAAATATGACGATCCACTTGAGGCCGCACAACTACACGGAGGGTGTGGTGCT 1140 ||||| |||||||| || ||||| || ||||||||||||||||||||||||||||||||| Sbjct 1101 GAGCTTTTAAAATACGATGATCCGCTAGAGGCCGCACAACTACACGGAGGGTGTGGTGCT 1160 Query 1141 TGGGGTTTGATATTTGTAGGACTGTTTGCAAAAGAGAAGTATATAAATGAGGTTTACGGC 1200 ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| Sbjct 1161 TGGGGTTTGATATTTGTAGGACTATTTGCAAAAGAGAAGTATGTAAATGAGGTTTACGGC 1220 Query 1201 GCGAGCCCAGGAAGGCACTACGGGCTATTTATGGGCGGAGGAGGGAAGCTATTGGGAGCA 1260 || ||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 1221 GCAAGCCCGGGAAGGCACTACGGACTATTTATGGGAGGAGGAGGGAAGCTATTGGGAGCA 1280 Query 1261 CAACTGGTTCAAATAATTGTGATTGTTGGATGGGTTAGTGCCACAATGGGAACACTCTTC 1320 ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1281 CAATTGGTCCAAATAATTGTGATTGTTGGATGGGTTAGTGCCACAATGGGAACACTCTTC 1340 Query 1321 TTCATCCTCAAAAAGCTCAATTTGCTTAGGATCTCGGA-GCAGCATGAAATGCGAGGAAT 1379 || || || ||||||||||||||||||||||||||| | | || |||| |||| |||||| Sbjct 1341 TTTATGCTTAAAAAGCTCAATTTGCTTAGGATCTCGAATG-AGGATGAGATGCAAGGAAT 1399 Query 1380 GGATTTAGCAGGTCATGGTGGTTTTGCTTATATCTACCATGATAATGATGATGATTCCAT 1439 |||| ||||| |||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1400 GGATATAGCACGTCACGGTGGTTTTGCTTATATCTACCATGATAATGATGATGACTCCAT 1459 Query 1440 TGGAGTGCCTGGATCTCCAGTACCTCGTGCGCCTAACCCTCCAGCCGTTT 1489 | ||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 1460 TCGAGTGCCTGGATCTCCAATACCTCGTGCGCCTAACCCTCCAGACGTTT 1509 > Ahg479942 jgi|Araly1|479942|fgenesh2_kg.3__2643__AT3G24300.1 Length=1592 Score = 1663 bits (900), Expect = 0.0 Identities = 1266/1444 (88%), Gaps = 19/1444 (1%) Strand=Plus/Plus Query 1 ATGTCAGGAGCTATTACTTGCTCTGCGGCTGATCTC-TCAGCCCTACTCGG-CCCAAATG 58 ||| |||||||||| || ||||||||||| |||||| || ||||||| || ||| || | Sbjct 32 ATGGCAGGAGCTATAACATGCTCTGCGGCCGATCTCGCCA-CCCTACTTGGTCCC-AACG 89 Query 59 CCACGGCAGCGGCTGACTACATTTGCGGCCAGTTGGGTTCCGTTAACAACAAGTTTACCG 118 |||| || ||||| |||||||||||| ||||||| ||| |||||||||||||||| |||| Sbjct 90 CCACCGCGGCGGCCGACTACATTTGCAGCCAGTTAGGTACCGTTAACAACAAGTTCACCG 149 Query 119 ATGCAGCCTACGCTATAGACAACACGTACCTCCTCTTCTCTGCCTATCTTGTCTT-TGCG 177 ||||||||| || || |||||||| |||||||||||||||||||| |||||||| | | Sbjct 150 ATGCAGCCTTTGCCATCGACAACACATACCTCCTCTTCTCTGCCTACCTTGTCTTCT-CC 208 Query 178 ATGCAGCTCGGCTTCGCTATGCTTTGTGCTGGCTCCGTTAGAGCTAAGAACACGATGAAC 237 |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||| Sbjct 209 ATGCAGCTCGGCTTCGCTATGCTTTGCGCTGGCTCCGTTAGAGCCAAGAATACGATGAAC 268 Query 238 ATCATGCTCACTAATGTCCTTGATGCTGCAGCCGGAGGACTCTTCTACTACCTCTTTGGT 297 |||||||| || ||||| |||||||||||||||||||||||||| ||||| ||||||||| Sbjct 269 ATCATGCTTACCAATGTTCTTGATGCTGCAGCCGGAGGACTCTTTTACTATCTCTTTGGT 328 Query 298 TATGCATTTGCCTTTGGTGAATCCTCCGATGGATTCATTGGAAGACACAACTTTGGTCTT 357 || || |||||||| || | ||| ||||| ||||||||||||||||||||||||| |||| Sbjct 329 TACGCCTTTGCCTTCGGCGGATCTTCCGAAGGATTCATTGGAAGACACAACTTTGCTCTT 388 Query 358 CA-AAACTTTCCGACTCTCACCTCGGATTACTCCTTCTTCCTCTACCAATGGGCGTTTGC 416 | | |||| ||||||| ||| | |||||||| ||||||||||| ||||||||||| || Sbjct 389 -AGAGACTTCCCGACTCCCACAGCTGATTACTCTTTCTTCCTCTATCAATGGGCGTTCGC 447 Query 417 AATCGCAGCCGCTGGAATCACCAGCGGCTCCATTGCCGAGAGGACTAAGTTCGTGGCGTA 476 |||||| |||||||||||||| || || ||||| || ||||||||| |||||||||| || Sbjct 448 AATCGCGGCCGCTGGAATCACAAGTGGTTCCATAGCGGAGAGGACTCAGTTCGTGGCTTA 507 Query 477 TTTGATATACTCTTCTTTTTTGACCGGGTTTGTTTACCC-AGTTGTCTCTCACTGGTTCT 535 ||||||||||||||||| || ||||| ||||||||||| | |||||||||||||||| | Sbjct 508 CTTGATATACTCTTCTTTCTTAACCGGATTTGTTTACCCTA-TTGTCTCTCACTGGTTTT 566 Query 536 GGTCTCCGGATGGATGGGCTAGTCCCTTCCGTTCA---GAAGACCGTTTGTTTGGCACTG 592 |||| |||||||||||||| ||||||||||||||| ||||| ||||||||| |||| | Sbjct 567 GGTCCCCGGATGGATGGGCCAGTCCCTTCCGTTCAGCGGAAGATCGTTTGTTTAGCACCG 626 Query 593 GAGCCATCGACTTTGCTGGGTCAGGTGTTGTTCACATGGTTGGTGGTATCGCAGGATTAT 652 ||||||||||||||||||| || || |||||||||||||||||||| || ||||| || | Sbjct 627 GAGCCATCGACTTTGCTGGCTCCGGAGTTGTTCACATGGTTGGTGGCATAGCAGGTTTGT 686 Query 653 GGGGTGCCCTTATTGAAGGCCCTCGGATTGGTCGGTTTCCTG-ATGGGGGTCATGCTATT 711 ||||||| ||||| ||||| ||||| |||| || ||| | | || |||| |||||| Sbjct 687 GGGGTGCTCTTATCGAAGGTCCTCGTCGTGGTAGG-TTCGAGAAAGGTGGTCGCGCTATT 745 Query 712 GCTCTGCGAGGCCACTCTGCCTCACTCGTCGTCTTAGGGACCTTCCTTCTCTGGTTTGGT 771 |||||||| |||||||||||||| || || || ||||| |||||||| || ||||| || Sbjct 746 GCTCTGCGCGGCCACTCTGCCTCGCTTGTAGTGTTAGGAACCTTCCTCCTATGGTTCGGC 805 Query 772 TGGTACGGGTTCAACCCTGGTTCCTTCACCAAGATACTCATTCCCTACAATTCTGGTTCC 831 ||||| || |||||||| ||||||||||| ||||||||| |||| || |||||||||||| Sbjct 806 TGGTATGGTTTCAACCCGGGTTCCTTCACTAAGATACTCGTTCCGTATAATTCTGGTTCC 865 Query 832 AACTATGGCCAATGGAGTGGAATAGGCCGCACCGCGGTT-ACAACTACACTCTCGGGATG 890 ||||| ||||||||||| ||||| |||||||| |||||| || || |||||||| ||||| Sbjct 866 AACTACGGCCAATGGAGCGGAATTGGCCGCACAGCGGTTAAC-ACCACACTCTCAGGATG 924 Query 891 CACAGCGGCTCTAACCACACTCTTCGGAAAACGTCTCCTATCAGGCCACTGGAACGTAAC 950 ||| || ||||||||||||||||| || |||||||| ||||||||||||||||||||||| Sbjct 925 CACCGCAGCTCTAACCACACTCTTTGGTAAACGTCTTCTATCAGGCCACTGGAACGTAAC 984 Query 951 TGACGTTTGCAACGGGTTACTCGGAGGGTTTGCGGCCATAACGGCAGGTTGCTCTGTGGT 1010 ||||||||||||||||||||||| || |||||||||||||| ||||||||||| ||||| Sbjct 985 GGACGTTTGCAACGGGTTACTCGGTGGATTTGCGGCCATAACCGCAGGTTGCTCCGTGGT 1044 Query 1011 TGATCCATGGGCAGCGATCGTATGTGGCTTCGTGGCTTCCCTCGTCCTTATCGGATGCAA 1070 || ||||||||||| ||||| || |||||| ||||||||||||| |||||||||||||| Sbjct 1045 AGAGCCATGGGCAGCTATCGTCTGCGGCTTCATGGCTTCCCTCGTTCTTATCGGATGCAA 1104 Query 1071 CAAGCTCGCAGAGCTCTTAAAATATGACGATCCACTTGAGGCCGCACAACTACACGGAGG 1130 ||||||||| |||||| || ||||||| |||||||| ||||| || |||||||||||||| Sbjct 1105 CAAGCTCGCGGAGCTCGTACAATATGATGATCCACTCGAGGCGGCCCAACTACACGGAGG 1164 Query 1131 GTGTGGTGCTTGGGGTTTGATATTTGTAGGACTGTTTGCAAAAGAGAAGTATATAAATGA 1190 |||||| || ||||| ||||||||||||||| ||||||| |||||||||||| |||| || Sbjct 1165 GTGTGGCGCGTGGGGGTTGATATTTGTAGGATTGTTTGCCAAAGAGAAGTATCTAAACGA 1224 Query 1191 GGTTTACGGCGCGAGCCCAGGAAGGCACTACGGGCTATTTATGGGCGGAGGAGGGAAGCT 1250 |||||| ||| | | ||| ||||||| ||| || |||||||||||||||||||||||||| Sbjct 1225 GGTTTATGGCACCACCCCGGGAAGGCCCTATGGACTATTTATGGGCGGAGGAGGGAAGCT 1284 Query 1251 ATTGGGAGCACAACTGGTTCAAATAATTGTGATTGTTGGATGGGTTAGTGCCACAATGGG 1310 |||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 1285 GTTGGGAGCACAATTGGTTCAAATACTTGTGATTGCGGGATGGGTTAGTGCCACAATGGG 1344 Query 1311 AACACTCTTCTTCATCCTCAAAAAGCTCAATTTGCTTAGGATCTCGGAGCAGCATGAAAT 1370 |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| Sbjct 1345 AACACTCTTCTTCATCCTCAAAAAACTCAATCTGCTTAGGATCTCGGAGCAGCATGAAAT 1404 Query 1371 GCGAGGAATGGATTT-AGCAGGTCATGGTGGTTTTGCTTATATCTACCATGATAATGATG 1429 || |||||||||| | | || |||| ||||| |||||||||||||||||||||||| ||| Sbjct 1405 GCAAGGAATGGATATGA-CACGTCACGGTGGCTTTGCTTATATCTACCATGATAATAATG 1463 Query 1430 ATGA 1433 |||| Sbjct 1464 ATGA 1467 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55802208925 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5