BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24290.1
Length=1491
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930518 jgi|Araly1|930518|scaffold_302975.1 2252 0.0
Ahg479942 jgi|Araly1|479942|fgenesh2_kg.3__2643__AT3G24300.1 1663 0.0
> Ahg930518 jgi|Araly1|930518|scaffold_302975.1
Length=1531
Score = 2252 bits (1219), Expect = 0.0
Identities = 1400/1490 (94%), Gaps = 2/1490 (0%)
Strand=Plus/Plus
Query 1 ATGTCAGGAGCTATTACTTGCTCTGCGGCTGATCTCTCAGCCCTACTCGGCCCAAATGCC 60
||||| |||||||| ||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct 21 ATGTCGGGAGCTATAACTTGCTCTGCAGCTGATCTCTCTGCCCTACTCGGCCCCAATGCA 80
Query 61 ACGGCAGCGGCTGACTACATTTGCGGCCAGTTGGGTTCCGTTAACAACAAGTTTACCGAT 120
|| || |||||| |||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 81 ACCGCGGCGGCTAACTACATTTGCGGCCAATTGGGTACCGTTAACAACAAGTTTACCGAT 140
Query 121 GCAGCCTACGCTATAGACAACACGTACCTCCTCTTCTCTGCCTATCTTGTCTTTGCGATG 180
||||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||
Sbjct 141 GCAGCCTACGCTATAGACAACACTTACCTCCTCTTCTCCGCCTATCTCGTCTTCGCGATG 200
Query 181 CAGCTCGGCTTCGCTATGCTTTGTGCTGGCTCCGTTAGAGCTAAGAACACGATGAACATC 240
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 201 CAGCTTGGTTTCGCTATGCTTTGTGCTGGCTCCGTTAGAGCCAAGAACACGATGAACATC 260
Query 241 ATGCTCACTAATGTCCTTGATGCTGCAGCCGGAGGACTCTTCTACTACCTCTTTGGTTAT 300
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 261 ATGCTCACTAATGTCCTTGATGCTGCAGCTGGAGGACTCTTCTACTATCTCTTTGGTTAT 320
Query 301 GCATTTGCCTTTGGTGAATCCTCCGATGGATTCATTGGAAGACACAACTTTGGTCTTCAA 360
|| ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||| ||
Sbjct 321 GCCTTTGCCTTTGGCGAATCCTCTGATGGATTCATCGGAAGACACAACTTTGGTCTTAAA 380
Query 361 AACTTTCCGACTCTCACCTCGGATTACTCCTTCTTCCTCTACCAATGGGCGTTTGCAATC 420
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||
Sbjct 381 AACTTTCCGACTCTCACTTCGGATTACTCCTTCTTCCTCTACCAATGGGCCTTTGCTATC 440
Query 421 GCAGCCGCTGGAATCACCAGCGGCTCCATTGCCGAGAGGACTAAGTTCGTGGCGTATTTG 480
|| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 441 GCCGCCGCTGGAATCACCAGCGGTTCGATTGCCGAGAGGACTAAGTTCGTGGCGTATTTG 500
Query 481 ATATACTCTTCTTTTTTGACCGGGTTTGTTTACCCAGTTGTCTCTCACTGGTTCTGGTCT 540
||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 501 ATATACTCTTCTTTTTTGACCGGGTTTGTTTACCCGGTCGTTTCTCACTGGTTCTGGTCT 560
Query 541 CCGGATGGATGGGCTAGTCCCTTCCGTTCAGAAGACCGTTTGTTTGGCACTGGAGCCATC 600
||||| |||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 561 CCGGACGGATGGGCTAGTCCGTTTCGTTCAGAAGACCGTTTGTTTGGCACCGGAGCCATC 620
Query 601 GACTTTGCTGGGTCAGGTGTTGTTCACATGGTTGGTGGTATCGCAGGATTATGGGGTGCC 660
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 621 GACTTTGCGGGGTCAGGTGTTGTTCACATGGTTGGTGGTATCGCTGGATTATGGGGAGCC 680
Query 661 CTTATTGAAGGCCCTCGGATTGGTCGGTTTCCTGATGGGGGTCATGCTATTGCTCTGCGA 720
||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 681 CTTATCGAAGGTCCTCGGATTGGCCGGTTCCCTGATGGGGGTCATGCTATTGCTCTGCGC 740
Query 721 GGCCACTCTGCCTCACTCGTCGTCTTAGGGACCTTCCTTCTCTGGTTTGGTTGGTACGGG 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 741 GGCCACTCTGCCTCACTCGTCGTCTTAGGGACCTTCCTTCTCTGGTTTGGTTGGTATGGG 800
Query 781 TTCAACCCTGGTTCCTTCACCAAGATACTCATTCCCTACAATTCTGGTTCCAACTATGGC 840
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 801 TTCAACCCTGGTTCCTTCACCAAGATACTCATTCCTTACAATTCTGGATCCAACTATGGC 860
Query 841 CAATGGAGTGGAATAGGCCGCACCGCGGTTACAACTACACTCTCGGGATGCACAGCGGCT 900
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 861 CAATGGAGTGGAATAGGCCGCACGGCGGTTACAACTACACTCTCGGGATGCACAGCGGCT 920
Query 901 CTAACCACACTCTTCGGAAAACGTCTCCTATCAGGCCACTGGAACGTAACTGACGTTTGC 960
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 921 CTAACCACCCTCTTCGGAAAACGTCTCCTATCAGGCCACTGGAACGTAACCGATGTTTGC 980
Query 961 AACGGGTTACTCGGAGGGTTTGCGGCCATAACGGCAGGTTGCTCTGTGGTTGATCCATGG 1020
||||| ||||| || ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 981 AACGGTTTACTTGGCGGGTTTGCGGCCATAACCGCAGGTTGCTCCGTGGTTGATCCATGG 1040
Query 1021 GCAGCGATCGTATGTGGCTTCGTGGCTTCCCTCGTCCTTATCGGATGCAACAAGCTCGCA 1080
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1041 GCAGCGATCGTATGCGGCTTCATGGCTTCCCTCGTCCTTATCGGATGCAACAAGCTCGCG 1100
Query 1081 GAGCTCTTAAAATATGACGATCCACTTGAGGCCGCACAACTACACGGAGGGTGTGGTGCT 1140
||||| |||||||| || ||||| || |||||||||||||||||||||||||||||||||
Sbjct 1101 GAGCTTTTAAAATACGATGATCCGCTAGAGGCCGCACAACTACACGGAGGGTGTGGTGCT 1160
Query 1141 TGGGGTTTGATATTTGTAGGACTGTTTGCAAAAGAGAAGTATATAAATGAGGTTTACGGC 1200
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1161 TGGGGTTTGATATTTGTAGGACTATTTGCAAAAGAGAAGTATGTAAATGAGGTTTACGGC 1220
Query 1201 GCGAGCCCAGGAAGGCACTACGGGCTATTTATGGGCGGAGGAGGGAAGCTATTGGGAGCA 1260
|| ||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1221 GCAAGCCCGGGAAGGCACTACGGACTATTTATGGGAGGAGGAGGGAAGCTATTGGGAGCA 1280
Query 1261 CAACTGGTTCAAATAATTGTGATTGTTGGATGGGTTAGTGCCACAATGGGAACACTCTTC 1320
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1281 CAATTGGTCCAAATAATTGTGATTGTTGGATGGGTTAGTGCCACAATGGGAACACTCTTC 1340
Query 1321 TTCATCCTCAAAAAGCTCAATTTGCTTAGGATCTCGGA-GCAGCATGAAATGCGAGGAAT 1379
|| || || ||||||||||||||||||||||||||| | | || |||| |||| ||||||
Sbjct 1341 TTTATGCTTAAAAAGCTCAATTTGCTTAGGATCTCGAATG-AGGATGAGATGCAAGGAAT 1399
Query 1380 GGATTTAGCAGGTCATGGTGGTTTTGCTTATATCTACCATGATAATGATGATGATTCCAT 1439
|||| ||||| |||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1400 GGATATAGCACGTCACGGTGGTTTTGCTTATATCTACCATGATAATGATGATGACTCCAT 1459
Query 1440 TGGAGTGCCTGGATCTCCAGTACCTCGTGCGCCTAACCCTCCAGCCGTTT 1489
| ||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1460 TCGAGTGCCTGGATCTCCAATACCTCGTGCGCCTAACCCTCCAGACGTTT 1509
> Ahg479942 jgi|Araly1|479942|fgenesh2_kg.3__2643__AT3G24300.1
Length=1592
Score = 1663 bits (900), Expect = 0.0
Identities = 1266/1444 (88%), Gaps = 19/1444 (1%)
Strand=Plus/Plus
Query 1 ATGTCAGGAGCTATTACTTGCTCTGCGGCTGATCTC-TCAGCCCTACTCGG-CCCAAATG 58
||| |||||||||| || ||||||||||| |||||| || ||||||| || ||| || |
Sbjct 32 ATGGCAGGAGCTATAACATGCTCTGCGGCCGATCTCGCCA-CCCTACTTGGTCCC-AACG 89
Query 59 CCACGGCAGCGGCTGACTACATTTGCGGCCAGTTGGGTTCCGTTAACAACAAGTTTACCG 118
|||| || ||||| |||||||||||| ||||||| ||| |||||||||||||||| ||||
Sbjct 90 CCACCGCGGCGGCCGACTACATTTGCAGCCAGTTAGGTACCGTTAACAACAAGTTCACCG 149
Query 119 ATGCAGCCTACGCTATAGACAACACGTACCTCCTCTTCTCTGCCTATCTTGTCTT-TGCG 177
||||||||| || || |||||||| |||||||||||||||||||| |||||||| | |
Sbjct 150 ATGCAGCCTTTGCCATCGACAACACATACCTCCTCTTCTCTGCCTACCTTGTCTTCT-CC 208
Query 178 ATGCAGCTCGGCTTCGCTATGCTTTGTGCTGGCTCCGTTAGAGCTAAGAACACGATGAAC 237
|||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct 209 ATGCAGCTCGGCTTCGCTATGCTTTGCGCTGGCTCCGTTAGAGCCAAGAATACGATGAAC 268
Query 238 ATCATGCTCACTAATGTCCTTGATGCTGCAGCCGGAGGACTCTTCTACTACCTCTTTGGT 297
|||||||| || ||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 269 ATCATGCTTACCAATGTTCTTGATGCTGCAGCCGGAGGACTCTTTTACTATCTCTTTGGT 328
Query 298 TATGCATTTGCCTTTGGTGAATCCTCCGATGGATTCATTGGAAGACACAACTTTGGTCTT 357
|| || |||||||| || | ||| ||||| ||||||||||||||||||||||||| ||||
Sbjct 329 TACGCCTTTGCCTTCGGCGGATCTTCCGAAGGATTCATTGGAAGACACAACTTTGCTCTT 388
Query 358 CA-AAACTTTCCGACTCTCACCTCGGATTACTCCTTCTTCCTCTACCAATGGGCGTTTGC 416
| | |||| ||||||| ||| | |||||||| ||||||||||| ||||||||||| ||
Sbjct 389 -AGAGACTTCCCGACTCCCACAGCTGATTACTCTTTCTTCCTCTATCAATGGGCGTTCGC 447
Query 417 AATCGCAGCCGCTGGAATCACCAGCGGCTCCATTGCCGAGAGGACTAAGTTCGTGGCGTA 476
|||||| |||||||||||||| || || ||||| || ||||||||| |||||||||| ||
Sbjct 448 AATCGCGGCCGCTGGAATCACAAGTGGTTCCATAGCGGAGAGGACTCAGTTCGTGGCTTA 507
Query 477 TTTGATATACTCTTCTTTTTTGACCGGGTTTGTTTACCC-AGTTGTCTCTCACTGGTTCT 535
||||||||||||||||| || ||||| ||||||||||| | |||||||||||||||| |
Sbjct 508 CTTGATATACTCTTCTTTCTTAACCGGATTTGTTTACCCTA-TTGTCTCTCACTGGTTTT 566
Query 536 GGTCTCCGGATGGATGGGCTAGTCCCTTCCGTTCA---GAAGACCGTTTGTTTGGCACTG 592
|||| |||||||||||||| ||||||||||||||| ||||| ||||||||| |||| |
Sbjct 567 GGTCCCCGGATGGATGGGCCAGTCCCTTCCGTTCAGCGGAAGATCGTTTGTTTAGCACCG 626
Query 593 GAGCCATCGACTTTGCTGGGTCAGGTGTTGTTCACATGGTTGGTGGTATCGCAGGATTAT 652
||||||||||||||||||| || || |||||||||||||||||||| || ||||| || |
Sbjct 627 GAGCCATCGACTTTGCTGGCTCCGGAGTTGTTCACATGGTTGGTGGCATAGCAGGTTTGT 686
Query 653 GGGGTGCCCTTATTGAAGGCCCTCGGATTGGTCGGTTTCCTG-ATGGGGGTCATGCTATT 711
||||||| ||||| ||||| ||||| |||| || ||| | | || |||| ||||||
Sbjct 687 GGGGTGCTCTTATCGAAGGTCCTCGTCGTGGTAGG-TTCGAGAAAGGTGGTCGCGCTATT 745
Query 712 GCTCTGCGAGGCCACTCTGCCTCACTCGTCGTCTTAGGGACCTTCCTTCTCTGGTTTGGT 771
|||||||| |||||||||||||| || || || ||||| |||||||| || ||||| ||
Sbjct 746 GCTCTGCGCGGCCACTCTGCCTCGCTTGTAGTGTTAGGAACCTTCCTCCTATGGTTCGGC 805
Query 772 TGGTACGGGTTCAACCCTGGTTCCTTCACCAAGATACTCATTCCCTACAATTCTGGTTCC 831
||||| || |||||||| ||||||||||| ||||||||| |||| || ||||||||||||
Sbjct 806 TGGTATGGTTTCAACCCGGGTTCCTTCACTAAGATACTCGTTCCGTATAATTCTGGTTCC 865
Query 832 AACTATGGCCAATGGAGTGGAATAGGCCGCACCGCGGTT-ACAACTACACTCTCGGGATG 890
||||| ||||||||||| ||||| |||||||| |||||| || || |||||||| |||||
Sbjct 866 AACTACGGCCAATGGAGCGGAATTGGCCGCACAGCGGTTAAC-ACCACACTCTCAGGATG 924
Query 891 CACAGCGGCTCTAACCACACTCTTCGGAAAACGTCTCCTATCAGGCCACTGGAACGTAAC 950
||| || ||||||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 925 CACCGCAGCTCTAACCACACTCTTTGGTAAACGTCTTCTATCAGGCCACTGGAACGTAAC 984
Query 951 TGACGTTTGCAACGGGTTACTCGGAGGGTTTGCGGCCATAACGGCAGGTTGCTCTGTGGT 1010
||||||||||||||||||||||| || |||||||||||||| ||||||||||| |||||
Sbjct 985 GGACGTTTGCAACGGGTTACTCGGTGGATTTGCGGCCATAACCGCAGGTTGCTCCGTGGT 1044
Query 1011 TGATCCATGGGCAGCGATCGTATGTGGCTTCGTGGCTTCCCTCGTCCTTATCGGATGCAA 1070
|| ||||||||||| ||||| || |||||| ||||||||||||| ||||||||||||||
Sbjct 1045 AGAGCCATGGGCAGCTATCGTCTGCGGCTTCATGGCTTCCCTCGTTCTTATCGGATGCAA 1104
Query 1071 CAAGCTCGCAGAGCTCTTAAAATATGACGATCCACTTGAGGCCGCACAACTACACGGAGG 1130
||||||||| |||||| || ||||||| |||||||| ||||| || ||||||||||||||
Sbjct 1105 CAAGCTCGCGGAGCTCGTACAATATGATGATCCACTCGAGGCGGCCCAACTACACGGAGG 1164
Query 1131 GTGTGGTGCTTGGGGTTTGATATTTGTAGGACTGTTTGCAAAAGAGAAGTATATAAATGA 1190
|||||| || ||||| ||||||||||||||| ||||||| |||||||||||| |||| ||
Sbjct 1165 GTGTGGCGCGTGGGGGTTGATATTTGTAGGATTGTTTGCCAAAGAGAAGTATCTAAACGA 1224
Query 1191 GGTTTACGGCGCGAGCCCAGGAAGGCACTACGGGCTATTTATGGGCGGAGGAGGGAAGCT 1250
|||||| ||| | | ||| ||||||| ||| || ||||||||||||||||||||||||||
Sbjct 1225 GGTTTATGGCACCACCCCGGGAAGGCCCTATGGACTATTTATGGGCGGAGGAGGGAAGCT 1284
Query 1251 ATTGGGAGCACAACTGGTTCAAATAATTGTGATTGTTGGATGGGTTAGTGCCACAATGGG 1310
|||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1285 GTTGGGAGCACAATTGGTTCAAATACTTGTGATTGCGGGATGGGTTAGTGCCACAATGGG 1344
Query 1311 AACACTCTTCTTCATCCTCAAAAAGCTCAATTTGCTTAGGATCTCGGAGCAGCATGAAAT 1370
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1345 AACACTCTTCTTCATCCTCAAAAAACTCAATCTGCTTAGGATCTCGGAGCAGCATGAAAT 1404
Query 1371 GCGAGGAATGGATTT-AGCAGGTCATGGTGGTTTTGCTTATATCTACCATGATAATGATG 1429
|| |||||||||| | | || |||| ||||| |||||||||||||||||||||||| |||
Sbjct 1405 GCAAGGAATGGATATGA-CACGTCACGGTGGCTTTGCTTATATCTACCATGATAATAATG 1463
Query 1430 ATGA 1433
||||
Sbjct 1464 ATGA 1467
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55802208925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5