BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G24310.1 Length=1049 Score E Sequences producing significant alignments: (Bits) Value Ahg479944 jgi|Araly1|479944|fgenesh2_kg.3__2645__AT3G24310.1 1555 0.0 Ahg497421 jgi|Araly1|497421|fgenesh2_kg.397__1__AT3G24310.1 1114 0.0 Ahg488379 jgi|Araly1|488379|fgenesh2_kg.6__1513__AT5G15310.1 93.5 3e-18 > Ahg479944 jgi|Araly1|479944|fgenesh2_kg.3__2645__AT3G24310.1 Length=1043 Score = 1555 bits (842), Expect = 0.0 Identities = 980/1044 (94%), Gaps = 19/1044 (2%) Strand=Plus/Plus Query 13 aaaaaaaaaCTAAGAAGAAATAATGAGTTTGTGGGGAGGGATGGGAGGAGGATGGGGAAT 72 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 1 AAAAAAAAACTAAGAAGAAAGAATGAGTTTGTGGGGAGTGATGGGAGGAGGATGGGGAAT 60 Query 73 GGTAGAAGAAGGTTGGAGAAAAGGGCCTTGGACTGCTGAAGAAGACCGCCTTTTGATCGA 132 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 61 GGTAGAAGAAGGTTGGAGAAAAGGGCCTTGGACTGCTGGAGAAGACCGCCTTTTGATCGA 120 Query 133 TTATGTGCAGCTTCACGGTGAAGGGCGATGGAACTCTGTTGCGAGGCTCGCGGGGTTGAA 192 |||||||| ||||||||| ||||| |||||||||||||| || || ||||| |||||||| Sbjct 121 TTATGTGCGGCTTCACGGCGAAGGCCGATGGAACTCTGTGGCTAGACTCGCCGGGTTGAA 180 Query 193 GAGAAATGGGAAAAGCTGCAGGTTAAGATGGGTTAACTACCTAAGACCAGACCTCAAGAG 252 |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 181 GAGAAATGGGAAAAGCTGTAGGTTAAGATGGGTTAACTACTTAAGACCAGACCTCAAGAG 240 Query 253 AGGACAAATCACTCCTCATGAAGAAACCATTATCCTTGAGTTACATGCTAAGTGGGGCAA 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 AGGACAAATCACTCCTCATGAAGAAACCATTATCCTTGAGTTACATGCTAAGTGGGGCAA 300 Query 313 TAGGTGGTCCACGATTGCACGTAGTTTACCGGGAAGAACAGACAACGAAATCAAGAACTA 372 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TAGGTGGTCCACAATTGCACGTAGTTTACCGGGAAGAACAGACAACGAAATCAAGAACTA 360 Query 373 TTGGCGAACCCATTTCAAGAAGAAGACGAAGTCTCCAACTAACAGTGCGGAGAAGACAAA 432 ||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||| || Sbjct 361 TTGGCGAACCCATTTCAAGAAGAAGACAAAGTCTCCAACTAACAATGCGGAAAAGACGAA 420 Query 433 GAACCGAATCTTGAAGAGGCAACAATTTCAGCAGCAAAGACAAATGGAGTTGCAGCAAGA 492 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GAACCGAATCTTGAAGAGGCAACAATTTCAGCAGCAAAGACAAATGGAGTTGCAGCAAGA 480 Query 493 ACAACAGTTGCTTCAATTCAATCAAATCGACATGAAAAAGATCATGTCGTTACTAGATGA 552 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 481 ACAACAGTTGCTTCAATTCAATCAAATCGACATGAAAAAGATCATGTCTTTACTAGACGA 540 Query 553 CGACAACAACAA---TGGTGATAACA---CCTTCAGCAGTAGCAGTAGTGGC-G-A---- 600 |||||||||||| ||||||||| | ||||||||||||||||||| ||| | | Sbjct 541 CGACAACAACAACAATGGTGATAATAATACCTTCAGCAGTAGCAGTAGCGGCAGCAGCGG 600 Query 601 --AAG-TGGAGCATTATATGTACCTCATCAGATCACACATTCAACAACAACTTCTGGTTG 657 ||| ||| || || ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 601 TGAAGGTGGTGCGTTCTATGTGCCTCATCAGATCACACATTCAACAACAACTTCTGGTTG 660 Query 658 TGAACCAAATAGTAACGGGTATTACCCGGTGGTTCCGGTAACAATACCTGAGGCTAATGT 717 ||| ||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||| || Sbjct 661 TGACCCAAATAGTAACGGGTACTACCCTGTGGTTCCGGTGACAATGCCTGAGGCTAACGT 720 Query 718 GAATGAAGATAACGCTATTTGGGACGGTTTATGGAATCTGGATTTTGAAGGACAAGGAAG 777 ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| Sbjct 721 GAATGAAGATAACGCTATTTGGGACAATTTATGGAATGTGGATTTTGAAGGACAAGGAAG 780 Query 778 TTTTGGTGGCGCTGCTTGTGCCCCAAGGAAGCACTATTTCCAGAACATGGTCATTCCCTT 837 ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 781 TTTTGGTGGTGCTGCTTGTGCCCCAAGGAAGCAATATTTCCAGAACATGGTCATTCCCTT 840 Query 838 CTGTTAACTTGACCTTTAAAATATCT-T-ATCTGCCGGATAATGAAAGAGAAAAACTTGA 895 || |||||||||||||| |||||||| | ||||||||||||||||||||||||||||||| Sbjct 841 CTATTAACTTGACCTTTTAAATATCTCTTATCTGCCGGATAATGAAAGAGAAAAACTTGA 900 Query 896 CCGACAACTTAGGTCGAgtttgagtttagtttgtggtttcatttatttgagatttttggt 955 ||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 901 CCGACAAGTTAGGTCGAGTTTGAGTTTAGTTTGCGGTTTCATCTATTTGAGATTTTTGGT 960 Query 956 tttaacatatataattttgGTAT-GAATTGTGTGTGATGTAAGAAGCTCATTTGGTTTTA 1014 || |||||| ||| ||||| ||| |||||||||||||||||||||||||||||||||| | Sbjct 961 TTAAACATAAATAGTTTTGTTATTGAATTGTGTGTGATGTAAGAAGCTCATTTGGTTT-A 1019 Query 1015 TCATAAAAGAGTGATGTAGTAGAA 1038 |||||||||||||||||||||||| Sbjct 1020 TCATAAAAGAGTGATGTAGTAGAA 1043 > Ahg497421 jgi|Araly1|497421|fgenesh2_kg.397__1__AT3G24310.1 Length=772 Score = 1114 bits (603), Expect = 0.0 Identities = 717/769 (93%), Gaps = 19/769 (2%) Strand=Plus/Plus Query 288 TTGAGTTACATGCTAAGTGGGGCAATAGGTGGTCCACGATTGCACGTAGTTTACCGGGAA 347 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 5 TTGAGTTACATGCTAAGTGGGGCAATAGGTGGTCCACAATTGCACGTAGTTTACCGGGAA 64 Query 348 GAACAGACAACGAAATCAAGAACTATTGGCGAACCCATTTCAAGAAGAAGACGAAGTCTC 407 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 65 GAACAGACAACGAAATCAAGAACTATTGGCGAACCCATTTCAAGAAGAAGACAAAGTCTC 124 Query 408 CAACTAACAGTGCGGAGAAGACAAAGAACCGAATCTTGAAGAGGCAACAATTTCAGCAGC 467 ||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 125 CAACTAACAATGCGGAAAAGACGAAGAACCGAATCTTGAAGAGGCAACAATTTCAGCAGC 184 Query 468 AAAGACAAATGGAGTTGCAGCAAGAACAACAGTTGCTTCAATTCAATCAAATCGACATGA 527 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 185 AAAGACAAATGGAGTTGCAGCAAGAACAACAGTTGCTTCAATTCAATCAAATCGACATGA 244 Query 528 AAAAGATCATGTCGTTACTAGATGACG---ACAACAACAATGGTG---ATAACACCTTCA 581 ||||||||||||| |||||||| |||| ||||||||||||||| |||| ||||||| Sbjct 245 AAAAGATCATGTCTTTACTAGACGACGACAACAACAACAATGGTGATAATAATACCTTCA 304 Query 582 GCAGTAGCAGTAGTGGC-G-A------AA-GTGGAGCATTATATGTACCTCATCAGATCA 632 ||||||||||||| ||| | | || |||| || || ||||| ||||||||||||| Sbjct 305 GCAGTAGCAGTAGCGGCAGCAGCGGTGAAGGTGGTGCGTTCTATGTGCCTCATCAGATCA 364 Query 633 CACATTCAACAACAACTTCTGGTTGTGAACCAAATAGTAACGGGTATTACCCGGTGGTTC 692 |||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||| Sbjct 365 CACATTCAACAACAACTTCTGGTTGTGACCCAAATAGTAACGGGTACTACCCTGTGGTTC 424 Query 693 CGGTAACAATACCTGAGGCTAATGTGAATGAAGATAACGCTATTTGGGACGGTTTATGGA 752 |||| ||||| ||||||||||| ||||||||||||||||||||||||||| |||||||| Sbjct 425 CGGTGACAATGCCTGAGGCTAACGTGAATGAAGATAACGCTATTTGGGACAATTTATGGA 484 Query 753 ATCTGGATTTTGAAGGACAAGGAAGTTTTGGTGGCGCTGCTTGTGCCCCAAGGAAGCACT 812 || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 485 ATGTGGATTTTGAAGGACAAGGAAGTTTTGGTGGTGCTGCTTGTGCCCCAAGGAAGCAAT 544 Query 813 ATTTCCAGAACATGGTCATTCCCTTCTGTTAACTTGACCTTTAAAATATCT-T-ATCTGC 870 ||||||||||||||||||||||||||| |||||||||||||| |||||||| | |||||| Sbjct 545 ATTTCCAGAACATGGTCATTCCCTTCTATTAACTTGACCTTTTAAATATCTCTTATCTGC 604 Query 871 CGGATAATGAAAGAGAAAAACTTGACCGACAACTTAGGTCGAgtttgagtttagtttgtg 930 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | Sbjct 605 CGGATAATGAAAGAGAAAAACTTGACCGACAAGTTAGGTCGAGTTTGAGTTTAGTTTGCG 664 Query 931 gtttcatttatttgagatttttggttttaacatatataattttgGTAT-GAATTGTGTGT 989 ||||||| ||||||||||||||||||| |||||| ||| ||||| ||| ||||||||||| Sbjct 665 GTTTCATCTATTTGAGATTTTTGGTTTAAACATAAATAGTTTTGTTATTGAATTGTGTGT 724 Query 990 GATGTAAGAAGCTCATTTGGTTTTATCATAAAAGAGTGATGTAGTAGAA 1038 ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 725 GATGTAAGAAGCTCATTTGGTTT-ATCATAAAAGAGTGATGTAGTAGAA 772 > Ahg488379 jgi|Araly1|488379|fgenesh2_kg.6__1513__AT5G15310.1 Length=1310 Score = 93.5 bits (50), Expect = 3e-18 Identities = 156/204 (76%), Gaps = 20/204 (10%) Strand=Plus/Plus Query 200 GGGAAAAGCTGCAGGTTAAGATGGGTTAACTACCTAAGACCAGACCTCAAGAGAGGACAA 259 |||||||| ||||| |||||||| ||||||||||||||| ||| |||| ||||| ||| Sbjct 370 GGGAAAAGTTGCAGACTAAGATGGACTAACTACCTAAGACCTGACATCAAAAGAGG-CAA 428 Query 260 A-TC-AC-T-CCTCATGAAGAAACCATTATCCTTGAGTTACATGCTAAGTGGGGCAATAG 315 | || || | | | ||| |||| ||||||| | | |||||| || || || || Sbjct 429 ATTCAACTTGCAAGAAGAACAAACTATTATCC---AACTCCATGCTCTGTTAGGAAACAG 485 Query 316 GTGGTCCA-CGATTGC-ACGT-AGTTTACCGGGA-AGAACAGACAACGAAATCAAGAACT 371 |||| || ||||||| || | | ||| || | ||||||||||||||||||||||||| Sbjct 486 ATGGT-CAGCGATTGCTAC-TCA-TTTGCC-TAAGAGAACAGACAACGAAATCAAGAACT 541 Query 372 ATTGGCGAAC-C-CATTTCAAGAA 393 ||||| ||| | ||||| ||||| Sbjct 542 ATTGG--AACACTCATTTGAAGAA 563 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39037867008 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5