BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24310.1
Length=1049
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479944 jgi|Araly1|479944|fgenesh2_kg.3__2645__AT3G24310.1 1555 0.0
Ahg497421 jgi|Araly1|497421|fgenesh2_kg.397__1__AT3G24310.1 1114 0.0
Ahg488379 jgi|Araly1|488379|fgenesh2_kg.6__1513__AT5G15310.1 93.5 3e-18
> Ahg479944 jgi|Araly1|479944|fgenesh2_kg.3__2645__AT3G24310.1
Length=1043
Score = 1555 bits (842), Expect = 0.0
Identities = 980/1044 (94%), Gaps = 19/1044 (2%)
Strand=Plus/Plus
Query 13 aaaaaaaaaCTAAGAAGAAATAATGAGTTTGTGGGGAGGGATGGGAGGAGGATGGGGAAT 72
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1 AAAAAAAAACTAAGAAGAAAGAATGAGTTTGTGGGGAGTGATGGGAGGAGGATGGGGAAT 60
Query 73 GGTAGAAGAAGGTTGGAGAAAAGGGCCTTGGACTGCTGAAGAAGACCGCCTTTTGATCGA 132
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 GGTAGAAGAAGGTTGGAGAAAAGGGCCTTGGACTGCTGGAGAAGACCGCCTTTTGATCGA 120
Query 133 TTATGTGCAGCTTCACGGTGAAGGGCGATGGAACTCTGTTGCGAGGCTCGCGGGGTTGAA 192
|||||||| ||||||||| ||||| |||||||||||||| || || ||||| ||||||||
Sbjct 121 TTATGTGCGGCTTCACGGCGAAGGCCGATGGAACTCTGTGGCTAGACTCGCCGGGTTGAA 180
Query 193 GAGAAATGGGAAAAGCTGCAGGTTAAGATGGGTTAACTACCTAAGACCAGACCTCAAGAG 252
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 181 GAGAAATGGGAAAAGCTGTAGGTTAAGATGGGTTAACTACTTAAGACCAGACCTCAAGAG 240
Query 253 AGGACAAATCACTCCTCATGAAGAAACCATTATCCTTGAGTTACATGCTAAGTGGGGCAA 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGGACAAATCACTCCTCATGAAGAAACCATTATCCTTGAGTTACATGCTAAGTGGGGCAA 300
Query 313 TAGGTGGTCCACGATTGCACGTAGTTTACCGGGAAGAACAGACAACGAAATCAAGAACTA 372
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TAGGTGGTCCACAATTGCACGTAGTTTACCGGGAAGAACAGACAACGAAATCAAGAACTA 360
Query 373 TTGGCGAACCCATTTCAAGAAGAAGACGAAGTCTCCAACTAACAGTGCGGAGAAGACAAA 432
||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||| ||
Sbjct 361 TTGGCGAACCCATTTCAAGAAGAAGACAAAGTCTCCAACTAACAATGCGGAAAAGACGAA 420
Query 433 GAACCGAATCTTGAAGAGGCAACAATTTCAGCAGCAAAGACAAATGGAGTTGCAGCAAGA 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAACCGAATCTTGAAGAGGCAACAATTTCAGCAGCAAAGACAAATGGAGTTGCAGCAAGA 480
Query 493 ACAACAGTTGCTTCAATTCAATCAAATCGACATGAAAAAGATCATGTCGTTACTAGATGA 552
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 481 ACAACAGTTGCTTCAATTCAATCAAATCGACATGAAAAAGATCATGTCTTTACTAGACGA 540
Query 553 CGACAACAACAA---TGGTGATAACA---CCTTCAGCAGTAGCAGTAGTGGC-G-A---- 600
|||||||||||| ||||||||| | ||||||||||||||||||| ||| | |
Sbjct 541 CGACAACAACAACAATGGTGATAATAATACCTTCAGCAGTAGCAGTAGCGGCAGCAGCGG 600
Query 601 --AAG-TGGAGCATTATATGTACCTCATCAGATCACACATTCAACAACAACTTCTGGTTG 657
||| ||| || || ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 601 TGAAGGTGGTGCGTTCTATGTGCCTCATCAGATCACACATTCAACAACAACTTCTGGTTG 660
Query 658 TGAACCAAATAGTAACGGGTATTACCCGGTGGTTCCGGTAACAATACCTGAGGCTAATGT 717
||| ||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||| ||
Sbjct 661 TGACCCAAATAGTAACGGGTACTACCCTGTGGTTCCGGTGACAATGCCTGAGGCTAACGT 720
Query 718 GAATGAAGATAACGCTATTTGGGACGGTTTATGGAATCTGGATTTTGAAGGACAAGGAAG 777
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 721 GAATGAAGATAACGCTATTTGGGACAATTTATGGAATGTGGATTTTGAAGGACAAGGAAG 780
Query 778 TTTTGGTGGCGCTGCTTGTGCCCCAAGGAAGCACTATTTCCAGAACATGGTCATTCCCTT 837
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 781 TTTTGGTGGTGCTGCTTGTGCCCCAAGGAAGCAATATTTCCAGAACATGGTCATTCCCTT 840
Query 838 CTGTTAACTTGACCTTTAAAATATCT-T-ATCTGCCGGATAATGAAAGAGAAAAACTTGA 895
|| |||||||||||||| |||||||| | |||||||||||||||||||||||||||||||
Sbjct 841 CTATTAACTTGACCTTTTAAATATCTCTTATCTGCCGGATAATGAAAGAGAAAAACTTGA 900
Query 896 CCGACAACTTAGGTCGAgtttgagtttagtttgtggtttcatttatttgagatttttggt 955
||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 901 CCGACAAGTTAGGTCGAGTTTGAGTTTAGTTTGCGGTTTCATCTATTTGAGATTTTTGGT 960
Query 956 tttaacatatataattttgGTAT-GAATTGTGTGTGATGTAAGAAGCTCATTTGGTTTTA 1014
|| |||||| ||| ||||| ||| |||||||||||||||||||||||||||||||||| |
Sbjct 961 TTAAACATAAATAGTTTTGTTATTGAATTGTGTGTGATGTAAGAAGCTCATTTGGTTT-A 1019
Query 1015 TCATAAAAGAGTGATGTAGTAGAA 1038
||||||||||||||||||||||||
Sbjct 1020 TCATAAAAGAGTGATGTAGTAGAA 1043
> Ahg497421 jgi|Araly1|497421|fgenesh2_kg.397__1__AT3G24310.1
Length=772
Score = 1114 bits (603), Expect = 0.0
Identities = 717/769 (93%), Gaps = 19/769 (2%)
Strand=Plus/Plus
Query 288 TTGAGTTACATGCTAAGTGGGGCAATAGGTGGTCCACGATTGCACGTAGTTTACCGGGAA 347
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 5 TTGAGTTACATGCTAAGTGGGGCAATAGGTGGTCCACAATTGCACGTAGTTTACCGGGAA 64
Query 348 GAACAGACAACGAAATCAAGAACTATTGGCGAACCCATTTCAAGAAGAAGACGAAGTCTC 407
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 65 GAACAGACAACGAAATCAAGAACTATTGGCGAACCCATTTCAAGAAGAAGACAAAGTCTC 124
Query 408 CAACTAACAGTGCGGAGAAGACAAAGAACCGAATCTTGAAGAGGCAACAATTTCAGCAGC 467
||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 125 CAACTAACAATGCGGAAAAGACGAAGAACCGAATCTTGAAGAGGCAACAATTTCAGCAGC 184
Query 468 AAAGACAAATGGAGTTGCAGCAAGAACAACAGTTGCTTCAATTCAATCAAATCGACATGA 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 AAAGACAAATGGAGTTGCAGCAAGAACAACAGTTGCTTCAATTCAATCAAATCGACATGA 244
Query 528 AAAAGATCATGTCGTTACTAGATGACG---ACAACAACAATGGTG---ATAACACCTTCA 581
||||||||||||| |||||||| |||| ||||||||||||||| |||| |||||||
Sbjct 245 AAAAGATCATGTCTTTACTAGACGACGACAACAACAACAATGGTGATAATAATACCTTCA 304
Query 582 GCAGTAGCAGTAGTGGC-G-A------AA-GTGGAGCATTATATGTACCTCATCAGATCA 632
||||||||||||| ||| | | || |||| || || ||||| |||||||||||||
Sbjct 305 GCAGTAGCAGTAGCGGCAGCAGCGGTGAAGGTGGTGCGTTCTATGTGCCTCATCAGATCA 364
Query 633 CACATTCAACAACAACTTCTGGTTGTGAACCAAATAGTAACGGGTATTACCCGGTGGTTC 692
|||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 365 CACATTCAACAACAACTTCTGGTTGTGACCCAAATAGTAACGGGTACTACCCTGTGGTTC 424
Query 693 CGGTAACAATACCTGAGGCTAATGTGAATGAAGATAACGCTATTTGGGACGGTTTATGGA 752
|||| ||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 425 CGGTGACAATGCCTGAGGCTAACGTGAATGAAGATAACGCTATTTGGGACAATTTATGGA 484
Query 753 ATCTGGATTTTGAAGGACAAGGAAGTTTTGGTGGCGCTGCTTGTGCCCCAAGGAAGCACT 812
|| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 485 ATGTGGATTTTGAAGGACAAGGAAGTTTTGGTGGTGCTGCTTGTGCCCCAAGGAAGCAAT 544
Query 813 ATTTCCAGAACATGGTCATTCCCTTCTGTTAACTTGACCTTTAAAATATCT-T-ATCTGC 870
||||||||||||||||||||||||||| |||||||||||||| |||||||| | ||||||
Sbjct 545 ATTTCCAGAACATGGTCATTCCCTTCTATTAACTTGACCTTTTAAATATCTCTTATCTGC 604
Query 871 CGGATAATGAAAGAGAAAAACTTGACCGACAACTTAGGTCGAgtttgagtttagtttgtg 930
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 605 CGGATAATGAAAGAGAAAAACTTGACCGACAAGTTAGGTCGAGTTTGAGTTTAGTTTGCG 664
Query 931 gtttcatttatttgagatttttggttttaacatatataattttgGTAT-GAATTGTGTGT 989
||||||| ||||||||||||||||||| |||||| ||| ||||| ||| |||||||||||
Sbjct 665 GTTTCATCTATTTGAGATTTTTGGTTTAAACATAAATAGTTTTGTTATTGAATTGTGTGT 724
Query 990 GATGTAAGAAGCTCATTTGGTTTTATCATAAAAGAGTGATGTAGTAGAA 1038
||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 725 GATGTAAGAAGCTCATTTGGTTT-ATCATAAAAGAGTGATGTAGTAGAA 772
> Ahg488379 jgi|Araly1|488379|fgenesh2_kg.6__1513__AT5G15310.1
Length=1310
Score = 93.5 bits (50), Expect = 3e-18
Identities = 156/204 (76%), Gaps = 20/204 (10%)
Strand=Plus/Plus
Query 200 GGGAAAAGCTGCAGGTTAAGATGGGTTAACTACCTAAGACCAGACCTCAAGAGAGGACAA 259
|||||||| ||||| |||||||| ||||||||||||||| ||| |||| ||||| |||
Sbjct 370 GGGAAAAGTTGCAGACTAAGATGGACTAACTACCTAAGACCTGACATCAAAAGAGG-CAA 428
Query 260 A-TC-AC-T-CCTCATGAAGAAACCATTATCCTTGAGTTACATGCTAAGTGGGGCAATAG 315
| || || | | | ||| |||| ||||||| | | |||||| || || || ||
Sbjct 429 ATTCAACTTGCAAGAAGAACAAACTATTATCC---AACTCCATGCTCTGTTAGGAAACAG 485
Query 316 GTGGTCCA-CGATTGC-ACGT-AGTTTACCGGGA-AGAACAGACAACGAAATCAAGAACT 371
|||| || ||||||| || | | ||| || | |||||||||||||||||||||||||
Sbjct 486 ATGGT-CAGCGATTGCTAC-TCA-TTTGCC-TAAGAGAACAGACAACGAAATCAAGAACT 541
Query 372 ATTGGCGAAC-C-CATTTCAAGAA 393
||||| ||| | ||||| |||||
Sbjct 542 ATTGG--AACACTCATTTGAAGAA 563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39037867008
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5