BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G24315.1 Length=1186 Score E Sequences producing significant alignments: (Bits) Value Ahg479945 jgi|Araly1|479945|fgenesh2_kg.3__2646__AT3G24315.1 1589 0.0 Ahg338769 jgi|Araly1|338769|fgenesh1_pg.C_scaffold_2000868 95.3 9e-19 > Ahg479945 jgi|Araly1|479945|fgenesh2_kg.3__2646__AT3G24315.1 Length=1020 Score = 1589 bits (860), Expect = 0.0 Identities = 976/1030 (95%), Gaps = 15/1030 (1%) Strand=Plus/Plus Query 161 ATGGATGAGGTTGTTGTTGAAGTGGAGAAGACGAAGAGAGAATGGGAAGAAGCGTACGAG 220 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGATGAGGTTGTTGTTGAAGTGGAGAAGACGAAGAGAGAATGGGAAGAAGCGTACGAG 60 Query 221 AAGACGATTGGACATATTATCTCGATTCAACAGTACGGTAAATCAAGGAGGGGAGATGGA 280 |||||||||| |||||| || |||||||| ||||||||||||| | | ||||| ||| Sbjct 61 AAGACGATTGAACATATCATGGCGATTCAAGAGTACGGTAAATC-A--A--GGAGA-GGA 114 Query 281 GGAGAAGAGAAGTTTTCGTTACAGAGGCTCAACGGATTGGCTCAGGATGGTCTCTCTCTT 340 ||| |||||| ||||| | |||||||||||||||||||||||||||||||| |||||| Sbjct 115 -GAG--GAGAAGATTTCGCTGCAGAGGCTCAACGGATTGGCTCAGGATGGTCTTTCTCTT 171 Query 341 CTCAATTCCCTTCAATTCAATTTGGATCTGCTCGCACCTCAGCTTCCTTCTGATGATCAG 400 |||||||| || ||||||||||||||||| ||||| ||||||||||||||||| |||| | Sbjct 172 CTCAATTCTCTGCAATTCAATTTGGATCTTCTCGCGCCTCAGCTTCCTTCTGACGATCTG 231 Query 401 GTTCAATCCACTCAGTCACTCCTTGAAACGTGGAAGAATCAATATCACAGTTTGAGGGTA 460 |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 232 GTTCAATCTACTCAGTCACTGCTTGAAACCTGGAAGAATCAATATCACAGTTTGAGGGTA 291 Query 461 AACTTGAGAAGTGCTAATTTGCAAGCTAAGGATAACATGAGGAAAGCAGCTCAAGAAGAG 520 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 292 AACCTGAGAAGTGCTAATTTGCAAGCTAAGGATAACATGAGGAAAGCAGCTCAAGAAGAG 351 Query 521 AGAGAGCTTCTCCTCGGTGGTGGAACAGAGTCTACAGTTCTCAGACGTAAACGACAAGCA 580 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 352 AGAGAGCTTCTCCTCGGTGGTGGAACAGAGTCTACAGTTCTCAGACGTAAACGTCAAGCA 411 Query 581 AATGCTGGCGTGACATCCGATGCTGAAAGCATAACTGAAAGTCTCAGGCGTTCACGGCAG 640 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 412 AATGCTGGCGTGACATCGGATGCTGAAAGCATAACTGAAAGTCTCAGGCGTTCACGGCAG 471 Query 641 CTGATGGTTCAGGAGGTTGAACGAAGTACAAACACTCTCGTGGCTTTTGATGAATCTACT 700 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 472 CTGATGGTTCAGGAGGTTGAACGAAGTACAAACACTCTTGTGGCTTTTGATGAATCTACT 531 Query 701 GGAGTACTTAAAAAAGCCGAGAGTGAATACAAAGGTCATAGATCTCTGTTGTCGAGGACC 760 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 532 GGAGTACTTAAAAAAGCCGAGAGTGAATACAAAGGTCATAGGTCTCTGTTGTCGAGGACC 591 Query 761 CGTAATCTACTTTCAACAATGCAGCGTCAAGATGTAATTGACAGGATAATCCTCATAGTT 820 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 592 CGTAATCTACTTTCGACAATGCAGCGTCAAGATGTAATTGACAGGATAATCCTCATAGTT 651 Query 821 GGATTTTCTCTCTTTGTCTTTGCTGTTGTTTACGTTGTTTCAAAACGCATCGGAATTCTG 880 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 652 GGATTTTCTCTCTTTGTCTTTGCTGTTGTGTACGTTGTTTCAAAACGCATCGGAATTCTC 711 Query 881 AAACTGCAACGAATGGCTACTGCTGCTATTAAAGCTCAATTAGCTGGAAAAGCAGCAAAT 940 ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| Sbjct 712 AAACTGCAACGAATGGCCACTGCTGCTATTAAAGCTCAATTAGCTGGAAAAAAAGCAAAT 771 Query 941 GGTGTAGGAGATGATGTTATGCCGCTCGGACAACAGTTTGATGGCAATACAGTTCCAACT 1000 ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| Sbjct 772 GGTGTAGGAGATGATGTTATGCCTCTCGGACAACAGTTTGATGGCGATACAGTTCCAACT 831 Query 1001 GTTAATATTCCTCTACAACAACGCATGCACGATGAACTATGAAGCTCATTAGATGCTTGT 1060 ||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 832 GTTAACATTCCTCTACTACAACGCATGCACGATGAACTCTGAAGCTCATTAGATGCTTGT 891 Query 1061 AACATTGTTCAGGAAT--ATATATAT-T-ACAAGTTGATGTTGTTACCTAGGAATGCTCT 1116 ||||||||||| |||| |||||||| | ||||||||||||||||||||||||||||||| Sbjct 892 AACATTGTTCATGAATCTATATATATATTACAAGTTGATGTTGTTACCTAGGAATGCTCT 951 Query 1117 CTATATTACCACATGTTTCATGGACAACTGAAATTAAAGTTTCTTT-AAGATATCACAAA 1175 ||||||||||||||||||| |||||| ||||||| |||||||||| || |||||||||| Sbjct 952 ATATATTACCACATGTTTCAAGGACAATTGAAATTGAAGTTTCTTTGAA-ATATCACAAA 1010 Query 1176 TAATTGTTTG 1185 |||||||||| Sbjct 1011 TAATTGTTTG 1020 > Ahg338769 jgi|Araly1|338769|fgenesh1_pg.C_scaffold_2000868 Length=1200 Score = 95.3 bits (51), Expect = 9e-19 Identities = 51/51 (100%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 464 TTGAGAAGTGCTAATTTGCAAGCTAAGGATAACATGAGGAAAGCAGCTCAA 514 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1147 TTGAGAAGTGCTAATTTGCAAGCTAAGGATAACATGAGGAAAGCAGCTCAA 1197 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44260706637 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5