BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24315.1
Length=1186
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479945 jgi|Araly1|479945|fgenesh2_kg.3__2646__AT3G24315.1 1589 0.0
Ahg338769 jgi|Araly1|338769|fgenesh1_pg.C_scaffold_2000868 95.3 9e-19
> Ahg479945 jgi|Araly1|479945|fgenesh2_kg.3__2646__AT3G24315.1
Length=1020
Score = 1589 bits (860), Expect = 0.0
Identities = 976/1030 (95%), Gaps = 15/1030 (1%)
Strand=Plus/Plus
Query 161 ATGGATGAGGTTGTTGTTGAAGTGGAGAAGACGAAGAGAGAATGGGAAGAAGCGTACGAG 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATGAGGTTGTTGTTGAAGTGGAGAAGACGAAGAGAGAATGGGAAGAAGCGTACGAG 60
Query 221 AAGACGATTGGACATATTATCTCGATTCAACAGTACGGTAAATCAAGGAGGGGAGATGGA 280
|||||||||| |||||| || |||||||| ||||||||||||| | | ||||| |||
Sbjct 61 AAGACGATTGAACATATCATGGCGATTCAAGAGTACGGTAAATC-A--A--GGAGA-GGA 114
Query 281 GGAGAAGAGAAGTTTTCGTTACAGAGGCTCAACGGATTGGCTCAGGATGGTCTCTCTCTT 340
||| |||||| ||||| | |||||||||||||||||||||||||||||||| ||||||
Sbjct 115 -GAG--GAGAAGATTTCGCTGCAGAGGCTCAACGGATTGGCTCAGGATGGTCTTTCTCTT 171
Query 341 CTCAATTCCCTTCAATTCAATTTGGATCTGCTCGCACCTCAGCTTCCTTCTGATGATCAG 400
|||||||| || ||||||||||||||||| ||||| ||||||||||||||||| |||| |
Sbjct 172 CTCAATTCTCTGCAATTCAATTTGGATCTTCTCGCGCCTCAGCTTCCTTCTGACGATCTG 231
Query 401 GTTCAATCCACTCAGTCACTCCTTGAAACGTGGAAGAATCAATATCACAGTTTGAGGGTA 460
|||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 232 GTTCAATCTACTCAGTCACTGCTTGAAACCTGGAAGAATCAATATCACAGTTTGAGGGTA 291
Query 461 AACTTGAGAAGTGCTAATTTGCAAGCTAAGGATAACATGAGGAAAGCAGCTCAAGAAGAG 520
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 AACCTGAGAAGTGCTAATTTGCAAGCTAAGGATAACATGAGGAAAGCAGCTCAAGAAGAG 351
Query 521 AGAGAGCTTCTCCTCGGTGGTGGAACAGAGTCTACAGTTCTCAGACGTAAACGACAAGCA 580
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 352 AGAGAGCTTCTCCTCGGTGGTGGAACAGAGTCTACAGTTCTCAGACGTAAACGTCAAGCA 411
Query 581 AATGCTGGCGTGACATCCGATGCTGAAAGCATAACTGAAAGTCTCAGGCGTTCACGGCAG 640
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 AATGCTGGCGTGACATCGGATGCTGAAAGCATAACTGAAAGTCTCAGGCGTTCACGGCAG 471
Query 641 CTGATGGTTCAGGAGGTTGAACGAAGTACAAACACTCTCGTGGCTTTTGATGAATCTACT 700
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 472 CTGATGGTTCAGGAGGTTGAACGAAGTACAAACACTCTTGTGGCTTTTGATGAATCTACT 531
Query 701 GGAGTACTTAAAAAAGCCGAGAGTGAATACAAAGGTCATAGATCTCTGTTGTCGAGGACC 760
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 532 GGAGTACTTAAAAAAGCCGAGAGTGAATACAAAGGTCATAGGTCTCTGTTGTCGAGGACC 591
Query 761 CGTAATCTACTTTCAACAATGCAGCGTCAAGATGTAATTGACAGGATAATCCTCATAGTT 820
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 CGTAATCTACTTTCGACAATGCAGCGTCAAGATGTAATTGACAGGATAATCCTCATAGTT 651
Query 821 GGATTTTCTCTCTTTGTCTTTGCTGTTGTTTACGTTGTTTCAAAACGCATCGGAATTCTG 880
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 652 GGATTTTCTCTCTTTGTCTTTGCTGTTGTGTACGTTGTTTCAAAACGCATCGGAATTCTC 711
Query 881 AAACTGCAACGAATGGCTACTGCTGCTATTAAAGCTCAATTAGCTGGAAAAGCAGCAAAT 940
||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 712 AAACTGCAACGAATGGCCACTGCTGCTATTAAAGCTCAATTAGCTGGAAAAAAAGCAAAT 771
Query 941 GGTGTAGGAGATGATGTTATGCCGCTCGGACAACAGTTTGATGGCAATACAGTTCCAACT 1000
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 772 GGTGTAGGAGATGATGTTATGCCTCTCGGACAACAGTTTGATGGCGATACAGTTCCAACT 831
Query 1001 GTTAATATTCCTCTACAACAACGCATGCACGATGAACTATGAAGCTCATTAGATGCTTGT 1060
||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 832 GTTAACATTCCTCTACTACAACGCATGCACGATGAACTCTGAAGCTCATTAGATGCTTGT 891
Query 1061 AACATTGTTCAGGAAT--ATATATAT-T-ACAAGTTGATGTTGTTACCTAGGAATGCTCT 1116
||||||||||| |||| |||||||| | |||||||||||||||||||||||||||||||
Sbjct 892 AACATTGTTCATGAATCTATATATATATTACAAGTTGATGTTGTTACCTAGGAATGCTCT 951
Query 1117 CTATATTACCACATGTTTCATGGACAACTGAAATTAAAGTTTCTTT-AAGATATCACAAA 1175
||||||||||||||||||| |||||| ||||||| |||||||||| || ||||||||||
Sbjct 952 ATATATTACCACATGTTTCAAGGACAATTGAAATTGAAGTTTCTTTGAA-ATATCACAAA 1010
Query 1176 TAATTGTTTG 1185
||||||||||
Sbjct 1011 TAATTGTTTG 1020
> Ahg338769 jgi|Araly1|338769|fgenesh1_pg.C_scaffold_2000868
Length=1200
Score = 95.3 bits (51), Expect = 9e-19
Identities = 51/51 (100%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 464 TTGAGAAGTGCTAATTTGCAAGCTAAGGATAACATGAGGAAAGCAGCTCAA 514
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 TTGAGAAGTGCTAATTTGCAAGCTAAGGATAACATGAGGAAAGCAGCTCAA 1197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44260706637
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5