BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G24330.1 Length=1503 Score E Sequences producing significant alignments: (Bits) Value Ahg479948 jgi|Araly1|479948|fgenesh2_kg.3__2649__AT3G24330.1 2300 0.0 Ahg925686 jgi|Araly1|925686|scaffold_201247.1 248 8e-65 Ahg930973 jgi|Araly1|930973|scaffold_303430.1 117 2e-25 > Ahg479948 jgi|Araly1|479948|fgenesh2_kg.3__2649__AT3G24330.1 Length=1503 Score = 2300 bits (1245), Expect = 0.0 Identities = 1420/1506 (94%), Gaps = 6/1506 (0%) Strand=Plus/Plus Query 1 ATGGCAGGAGAGAGATCAAAGTTAACAACAAACCACTTTTATAATCATCAGATTATTCTT 60 ||||||| ||||||||||||||| |||||||||||||| ||| ||||||||||||||||| Sbjct 1 ATGGCAGAAGAGAGATCAAAGTTGACAACAAACCACTTCTATTATCATCAGATTATTCTT 60 Query 61 TGTTAC-TTTCTTATCATCTCACAAGTTTCCATTGCCTCAAGCAACACGAGTAATGTAGG 119 |||| | ||||||||||||||||||||||||||||||||||||||||| |||| |||||| Sbjct 61 TGTT-CATTTCTTATCATCTCACAAGTTTCCATTGCCTCAAGCAACACTAGTAGTGTAGG 119 Query 120 AGTTAACTGGGGAATAATGGCGAGTCACCAGCTTCCACCAGAAAAGGTTGTGAAGATGCT 179 |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 120 AGTTAACTGGGGAACAATGGCGAGTCACCAGCTTCCACCAGAAAAGGTAGTGAAGATGCT 179 Query 180 A-ATGGACAATAGTTTCACTAAGCTGAAACTATTTGAAGCCGACCAAAACATCTTAGACG 238 | | |||||| ||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 180 ACA-AGACAATGGTTTCACTAAGCTGAAACTGTTTGAAGCCGACCAAAACATCTTAGACG 238 Query 239 CTCTAATTGGCTCAGACATTGAAGTCATGATAGGAATACCAAACCGGTTTCTTAAAGAAA 298 |||||||||||||| | || ||||||||||| ||||||||||||||||||||||||||| Sbjct 239 CTCTAATTGGCTCACAGATCGAAGTCATGATCGGAATACCAAACCGGTTTCTTAAAGAAT 298 Query 299 TGGCTCAAGATACATCTGTAGCAGCTTCATGGGTTGAAGAAAACGTTACTGCTTATTCTT 358 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 299 TGGCTCAAGATACATCTGTAGCAGCTTCGTGGGTTGAAGAAAACGTTACTGCTTATTCTT 358 Query 359 ACAACGGTGGAGTCAACATCAAGTACATAGCTGTTGGAAACGAGCCTTTCCTTCAGACAT 418 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 ACAATGGTGGAGTCAACATCAAGTACATAGCTGTTGGAAACGAGCCTTTCCTTCAGACAT 418 Query 419 ATAATGGAACTTACGTTGAGTTCACATTACCAGCTCTTATCAACATCCAACGAGCACTAG 478 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||| Sbjct 419 ATAATGGAACTTACGTTGAGTTCACTTTACCAGCTCTCATCAACATCCAACGAGCATTAG 478 Query 479 AGGAAGCTGATCTGAAAAATGTGAAAGTCACTGTTCCTTTCAACGCAGACATCTATTTTT 538 ||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 479 AGGAAGCTGATTTGAAAGGTGTGACAGTCACTGTTCCTTTCAACGCAGACATCTATTTTT 538 Query 539 CCCCTGAAGCGAACCCTGTTCCATCAGCTGGAGACTTTAGACCTGAGCTAAGGGATGCAA 598 | ||| |||||||||| |||||||||||||||| |||||| |||||||| |||||||||| Sbjct 539 CACCTTAAGCGAACCCGGTTCCATCAGCTGGAGGCTTTAGGCCTGAGCTTAGGGATGCAA 598 Query 599 CGATTGAGATAATCAATTTCTTGTATTCACATGATTCGCCTTTCACGGTTAACATATACC 658 ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| Sbjct 599 CGATTGAGATAATCAATTTCTTGTATTCACATGATTCACCTTTCACGGTCAACATTTACC 658 Query 659 CTTTTCTTAGTCTCTATGGAAATGCTTACTTTCCTTTGGATTTTGCCTTCTTTGATGGGA 718 ||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 659 CTTTTCTCAGTCTCTATGGAAATGCTTACTTCCCTTTGGACTTTGCCTTCTTTGATGGGA 718 Query 719 CTAACAAGTCTTTGAGAGATGGAAATTTGGTCTACACCAATGTGTTTGATGCGAATCTCG 778 ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 719 CTAACAAATCTTTGAGAGATGGAAATTTGGTCTACACTAATGTGTTTGATGCGAATCTCG 778 Query 779 ACACTTTGATTTGTGCTATGGAGAGATATAGCTTCTTGGGGATGAAGATCATTGTAGGAG 838 |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct 779 ACACTTTGATTTGTGCTATGGAGAAATATAGCTTCTTGGGGATGAAGATCATCGTAGGAG 838 Query 839 AGGTCGGGTGGCCTACGGATGGAGACAAGAACGCTAATGTAAAGAGTGCAAAGAGATTCA 898 | ||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 839 AAGTCGGATGGCCTACAGATGGAGACAAGAACGCTAATATAAAGAGTGCAAAGAGATTCA 898 Query 899 ATCAGGGAATGGTAAAGCATGCTATGTCTGGAAATGGAACGCCTGCGAGGAAAGGAGTGA 958 || |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 899 ATGAGGGGATGGTAAAGCATGCTATGTCTGGAAATGGAACGCCTGCGAGGAAATGAGTGA 958 Query 959 TTATGGATGTTTACCTTTTCAGCCTTGTTGATGAGGACGCCAAGAGTATAGCACCGGGGA 1018 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 959 TCATGGATGTTTACCTTTTCAGCCTTGTCGATGAGGACGCCAAGAGTATAGCACCGGGGA 1018 Query 1019 CTTTTGAGAGGCACTGGGGGATCTTTGAGTTTGATGGGAGACCGAAATATGAGCTTGACT 1078 |||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1019 CTTTTGAGAGACATTGGGGGATCTTTGGGTTTGATGGGAGACCGAAATATGAGCTTGACT 1078 Query 1079 TGTCAGGTAAAGGAAATGACAAGCCTTTGGTTCCTGTGGAAGATGTGAAGTATCTGCCCA 1138 ||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| | Sbjct 1079 TGTCAGGTAAAGGCAATGACAAGCCTTTGGTTCCTGTGGAAGATGTTAACTATCTGCCAA 1138 Query 1139 AAACTTGGTGTATTCTTGACCCTAATGCATATAACCTCGATGACTTGCCTGATAATATCG 1198 ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1139 AAACTTGGTGTGTTCTCGACCCTAATGCATATAACCTCGATGACTTGCCTGATAATATCG 1198 Query 1199 ACTATGCTTGTAGTTTGTCTGATTGCACAGCACTCGGGTATGGATCCTCTTGTAACCATC 1258 ||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1199 ACTATGCGGGTAGCTTATCTGATTGCACAGCACTCGGGTATGGATCCTCTTGTAACCATC 1258 Query 1259 TCACTGCTACAGGA-AATGTTTCATATGCCTTTAATATGTATTATCAGATGCACGATCAG 1317 | ||||| | || | |||| |||||||| |||||| |||||||||||||||||||||||| Sbjct 1259 TTACTGCCATAG-ACAATGCTTCATATGTCTTTAACATGTATTATCAGATGCACGATCAG 1317 Query 1318 AAAACATGGGACTGCGATTTCTTGGGGTTGGGTTTGATCACAGATGAAGATCCATCTGAT 1377 ||||| |||||||||||||||||||||||||||||||| | ||| ||||||||||||||| Sbjct 1318 AAAACCTGGGACTGCGATTTCTTGGGGTTGGGTTTGATAATAGACGAAGATCCATCTGAT 1377 Query 1378 GAACTTTGCGAGTTCCCTGTAATGATTGATACAGGAGATTCAACGAGGTTGCAGCCTGGA 1437 |||||||| ||||||||||| ||||||||||||||| ||||| | |||||||| ||| || Sbjct 1378 GAACTTTGTGAGTTCCCTGTGATGATTGATACAGGAAATTCACCAAGGTTGCAACCTCGA 1437 Query 1438 TCTTCAAGAGTGTTGACCAGAGTCGCAGCCGCGGTTTTAGTTATGTTGGTCCTTCCCATC 1497 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1438 TCTTCAAGAGTGTTGACCAGAGTCGCAGCCGCGGTTTTAGTTATGTTGGTCCTTCCCATC 1497 Query 1498 TTGTAG 1503 |||||| Sbjct 1498 TTGTAG 1503 > Ahg925686 jgi|Araly1|925686|scaffold_201247.1 Length=269 Score = 248 bits (134), Expect = 8e-65 Identities = 171/187 (91%), Gaps = 9/187 (5%) Strand=Plus/Plus Query 446 TAC-CAGCTCTTATCAACATCCAACGAGCACTAGAGGAAGCTGATCTGAAAAATG-TGAA 503 ||| ||||||| |||||||||||||||||| |||||||||||||||| ||||||| | || Sbjct 85 TACACAGCTCTCATCAACATCCAACGAGCATTAGAGGAAGCTGATCTTAAAAATGCT-AA 143 Query 504 AGTCACTGTTCCTTTCAACGCAGACATCTATTTTTCCCCTGAAGCGAACCCTGTTCCATC 563 |||||||||||||||||| ||||| ||||||||||| ||||||| ||||||||||||||| Sbjct 144 AGTCACTGTTCCTTTCAATGCAGATATCTATTTTTCGCCTGAAGGGAACCCTGTTCCATC 203 Query 564 AGCTGGAGACTTT-AGACCTGAGC----TAAGGGATGCAACGATTGAGATAATCAATTTC 618 ||||||||||||| || ||||||| |||||||||||||||||||||||||||||||| Sbjct 204 AGCTGGAGACTTTAAG-CCTGAGCTAATTAAGGGATGCAACGATTGAGATAATCAATTTC 262 Query 619 TTGTATT 625 ||||||| Sbjct 263 TTGTATT 269 > Ahg930973 jgi|Araly1|930973|scaffold_303430.1 Length=229 Score = 117 bits (63), Expect = 2e-25 Identities = 75/80 (94%), Gaps = 3/80 (4%) Strand=Plus/Plus Query 748 GTCTACACCAATGTGTTTGATG-C--GAATCTCGACACTTTGATTTGTGCTATGGAGAGA 804 |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 33 GTCTACACCAATGTGTTTGATGCCATCAATCTCGACACTTTGATTTGTGCTATGGAGAGA 92 Query 805 TATAGCTTCTTGGGGATGAA 824 || ||||||||||||||||| Sbjct 93 TACAGCTTCTTGGGGATGAA 112 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56259291865 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5