BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24330.1
Length=1503
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479948 jgi|Araly1|479948|fgenesh2_kg.3__2649__AT3G24330.1 2300 0.0
Ahg925686 jgi|Araly1|925686|scaffold_201247.1 248 8e-65
Ahg930973 jgi|Araly1|930973|scaffold_303430.1 117 2e-25
> Ahg479948 jgi|Araly1|479948|fgenesh2_kg.3__2649__AT3G24330.1
Length=1503
Score = 2300 bits (1245), Expect = 0.0
Identities = 1420/1506 (94%), Gaps = 6/1506 (0%)
Strand=Plus/Plus
Query 1 ATGGCAGGAGAGAGATCAAAGTTAACAACAAACCACTTTTATAATCATCAGATTATTCTT 60
||||||| ||||||||||||||| |||||||||||||| ||| |||||||||||||||||
Sbjct 1 ATGGCAGAAGAGAGATCAAAGTTGACAACAAACCACTTCTATTATCATCAGATTATTCTT 60
Query 61 TGTTAC-TTTCTTATCATCTCACAAGTTTCCATTGCCTCAAGCAACACGAGTAATGTAGG 119
|||| | ||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 61 TGTT-CATTTCTTATCATCTCACAAGTTTCCATTGCCTCAAGCAACACTAGTAGTGTAGG 119
Query 120 AGTTAACTGGGGAATAATGGCGAGTCACCAGCTTCCACCAGAAAAGGTTGTGAAGATGCT 179
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 120 AGTTAACTGGGGAACAATGGCGAGTCACCAGCTTCCACCAGAAAAGGTAGTGAAGATGCT 179
Query 180 A-ATGGACAATAGTTTCACTAAGCTGAAACTATTTGAAGCCGACCAAAACATCTTAGACG 238
| | |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 180 ACA-AGACAATGGTTTCACTAAGCTGAAACTGTTTGAAGCCGACCAAAACATCTTAGACG 238
Query 239 CTCTAATTGGCTCAGACATTGAAGTCATGATAGGAATACCAAACCGGTTTCTTAAAGAAA 298
|||||||||||||| | || ||||||||||| |||||||||||||||||||||||||||
Sbjct 239 CTCTAATTGGCTCACAGATCGAAGTCATGATCGGAATACCAAACCGGTTTCTTAAAGAAT 298
Query 299 TGGCTCAAGATACATCTGTAGCAGCTTCATGGGTTGAAGAAAACGTTACTGCTTATTCTT 358
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 299 TGGCTCAAGATACATCTGTAGCAGCTTCGTGGGTTGAAGAAAACGTTACTGCTTATTCTT 358
Query 359 ACAACGGTGGAGTCAACATCAAGTACATAGCTGTTGGAAACGAGCCTTTCCTTCAGACAT 418
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 ACAATGGTGGAGTCAACATCAAGTACATAGCTGTTGGAAACGAGCCTTTCCTTCAGACAT 418
Query 419 ATAATGGAACTTACGTTGAGTTCACATTACCAGCTCTTATCAACATCCAACGAGCACTAG 478
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||
Sbjct 419 ATAATGGAACTTACGTTGAGTTCACTTTACCAGCTCTCATCAACATCCAACGAGCATTAG 478
Query 479 AGGAAGCTGATCTGAAAAATGTGAAAGTCACTGTTCCTTTCAACGCAGACATCTATTTTT 538
||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 479 AGGAAGCTGATTTGAAAGGTGTGACAGTCACTGTTCCTTTCAACGCAGACATCTATTTTT 538
Query 539 CCCCTGAAGCGAACCCTGTTCCATCAGCTGGAGACTTTAGACCTGAGCTAAGGGATGCAA 598
| ||| |||||||||| |||||||||||||||| |||||| |||||||| ||||||||||
Sbjct 539 CACCTTAAGCGAACCCGGTTCCATCAGCTGGAGGCTTTAGGCCTGAGCTTAGGGATGCAA 598
Query 599 CGATTGAGATAATCAATTTCTTGTATTCACATGATTCGCCTTTCACGGTTAACATATACC 658
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct 599 CGATTGAGATAATCAATTTCTTGTATTCACATGATTCACCTTTCACGGTCAACATTTACC 658
Query 659 CTTTTCTTAGTCTCTATGGAAATGCTTACTTTCCTTTGGATTTTGCCTTCTTTGATGGGA 718
||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 659 CTTTTCTCAGTCTCTATGGAAATGCTTACTTCCCTTTGGACTTTGCCTTCTTTGATGGGA 718
Query 719 CTAACAAGTCTTTGAGAGATGGAAATTTGGTCTACACCAATGTGTTTGATGCGAATCTCG 778
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 719 CTAACAAATCTTTGAGAGATGGAAATTTGGTCTACACTAATGTGTTTGATGCGAATCTCG 778
Query 779 ACACTTTGATTTGTGCTATGGAGAGATATAGCTTCTTGGGGATGAAGATCATTGTAGGAG 838
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 779 ACACTTTGATTTGTGCTATGGAGAAATATAGCTTCTTGGGGATGAAGATCATCGTAGGAG 838
Query 839 AGGTCGGGTGGCCTACGGATGGAGACAAGAACGCTAATGTAAAGAGTGCAAAGAGATTCA 898
| ||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 839 AAGTCGGATGGCCTACAGATGGAGACAAGAACGCTAATATAAAGAGTGCAAAGAGATTCA 898
Query 899 ATCAGGGAATGGTAAAGCATGCTATGTCTGGAAATGGAACGCCTGCGAGGAAAGGAGTGA 958
|| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 899 ATGAGGGGATGGTAAAGCATGCTATGTCTGGAAATGGAACGCCTGCGAGGAAATGAGTGA 958
Query 959 TTATGGATGTTTACCTTTTCAGCCTTGTTGATGAGGACGCCAAGAGTATAGCACCGGGGA 1018
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 959 TCATGGATGTTTACCTTTTCAGCCTTGTCGATGAGGACGCCAAGAGTATAGCACCGGGGA 1018
Query 1019 CTTTTGAGAGGCACTGGGGGATCTTTGAGTTTGATGGGAGACCGAAATATGAGCTTGACT 1078
|||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1019 CTTTTGAGAGACATTGGGGGATCTTTGGGTTTGATGGGAGACCGAAATATGAGCTTGACT 1078
Query 1079 TGTCAGGTAAAGGAAATGACAAGCCTTTGGTTCCTGTGGAAGATGTGAAGTATCTGCCCA 1138
||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| |
Sbjct 1079 TGTCAGGTAAAGGCAATGACAAGCCTTTGGTTCCTGTGGAAGATGTTAACTATCTGCCAA 1138
Query 1139 AAACTTGGTGTATTCTTGACCCTAATGCATATAACCTCGATGACTTGCCTGATAATATCG 1198
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 AAACTTGGTGTGTTCTCGACCCTAATGCATATAACCTCGATGACTTGCCTGATAATATCG 1198
Query 1199 ACTATGCTTGTAGTTTGTCTGATTGCACAGCACTCGGGTATGGATCCTCTTGTAACCATC 1258
||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 ACTATGCGGGTAGCTTATCTGATTGCACAGCACTCGGGTATGGATCCTCTTGTAACCATC 1258
Query 1259 TCACTGCTACAGGA-AATGTTTCATATGCCTTTAATATGTATTATCAGATGCACGATCAG 1317
| ||||| | || | |||| |||||||| |||||| ||||||||||||||||||||||||
Sbjct 1259 TTACTGCCATAG-ACAATGCTTCATATGTCTTTAACATGTATTATCAGATGCACGATCAG 1317
Query 1318 AAAACATGGGACTGCGATTTCTTGGGGTTGGGTTTGATCACAGATGAAGATCCATCTGAT 1377
||||| |||||||||||||||||||||||||||||||| | ||| |||||||||||||||
Sbjct 1318 AAAACCTGGGACTGCGATTTCTTGGGGTTGGGTTTGATAATAGACGAAGATCCATCTGAT 1377
Query 1378 GAACTTTGCGAGTTCCCTGTAATGATTGATACAGGAGATTCAACGAGGTTGCAGCCTGGA 1437
|||||||| ||||||||||| ||||||||||||||| ||||| | |||||||| ||| ||
Sbjct 1378 GAACTTTGTGAGTTCCCTGTGATGATTGATACAGGAAATTCACCAAGGTTGCAACCTCGA 1437
Query 1438 TCTTCAAGAGTGTTGACCAGAGTCGCAGCCGCGGTTTTAGTTATGTTGGTCCTTCCCATC 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 TCTTCAAGAGTGTTGACCAGAGTCGCAGCCGCGGTTTTAGTTATGTTGGTCCTTCCCATC 1497
Query 1498 TTGTAG 1503
||||||
Sbjct 1498 TTGTAG 1503
> Ahg925686 jgi|Araly1|925686|scaffold_201247.1
Length=269
Score = 248 bits (134), Expect = 8e-65
Identities = 171/187 (91%), Gaps = 9/187 (5%)
Strand=Plus/Plus
Query 446 TAC-CAGCTCTTATCAACATCCAACGAGCACTAGAGGAAGCTGATCTGAAAAATG-TGAA 503
||| ||||||| |||||||||||||||||| |||||||||||||||| ||||||| | ||
Sbjct 85 TACACAGCTCTCATCAACATCCAACGAGCATTAGAGGAAGCTGATCTTAAAAATGCT-AA 143
Query 504 AGTCACTGTTCCTTTCAACGCAGACATCTATTTTTCCCCTGAAGCGAACCCTGTTCCATC 563
|||||||||||||||||| ||||| ||||||||||| ||||||| |||||||||||||||
Sbjct 144 AGTCACTGTTCCTTTCAATGCAGATATCTATTTTTCGCCTGAAGGGAACCCTGTTCCATC 203
Query 564 AGCTGGAGACTTT-AGACCTGAGC----TAAGGGATGCAACGATTGAGATAATCAATTTC 618
||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||
Sbjct 204 AGCTGGAGACTTTAAG-CCTGAGCTAATTAAGGGATGCAACGATTGAGATAATCAATTTC 262
Query 619 TTGTATT 625
|||||||
Sbjct 263 TTGTATT 269
> Ahg930973 jgi|Araly1|930973|scaffold_303430.1
Length=229
Score = 117 bits (63), Expect = 2e-25
Identities = 75/80 (94%), Gaps = 3/80 (4%)
Strand=Plus/Plus
Query 748 GTCTACACCAATGTGTTTGATG-C--GAATCTCGACACTTTGATTTGTGCTATGGAGAGA 804
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 33 GTCTACACCAATGTGTTTGATGCCATCAATCTCGACACTTTGATTTGTGCTATGGAGAGA 92
Query 805 TATAGCTTCTTGGGGATGAA 824
|| |||||||||||||||||
Sbjct 93 TACAGCTTCTTGGGGATGAA 112
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56259291865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5