BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24332.1
Length=1402
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479948 jgi|Araly1|479948|fgenesh2_kg.3__2649__AT3G24330.1 1347 0.0
Ahg925686 jgi|Araly1|925686|scaffold_201247.1 248 8e-65
Ahg930973 jgi|Araly1|930973|scaffold_303430.1 117 2e-25
> Ahg479948 jgi|Araly1|479948|fgenesh2_kg.3__2649__AT3G24330.1
Length=1503
Score = 1347 bits (729), Expect = 0.0
Identities = 827/875 (95%), Gaps = 4/875 (0%)
Strand=Plus/Minus
Query 530 AGCGTTCTTGTCTCCATCCGTAGGCCACCCGACCTCTCCTACAATGATCTTCATCCCCAA 589
|||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||
Sbjct 873 AGCGTTCTTGTCTCCATCTGTAGGCCATCCGACTTCTCCTACGATGATCTTCATCCCCAA 814
Query 590 GAAGCTATATCTCTCCATAGCACAAATCAAAGTGTCGAGATTCGCATCAAACACATTGGT 649
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 813 GAAGCTATATTTCTCCATAGCACAAATCAAAGTGTCGAGATTCGCATCAAACACATTAGT 754
Query 650 GTAGACCAAATTTCCATCTCTCAAAGACTTGTTAGTCCCATCAAAGAAGGCAAAATCCAA 709
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 753 GTAGACCAAATTTCCATCTCTCAAAGATTTGTTAGTCCCATCAAAGAAGGCAAAGTCCAA 694
Query 710 AGGAAAGTAAGCATTTCCATAGAGACTAAGAAAAGGGTATATGTTAACCGTGAAAGGCGA 769
||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||
Sbjct 693 AGGGAAGTAAGCATTTCCATAGAGACTGAGAAAAGGGTAAATGTTGACCGTGAAAGGTGA 634
Query 770 ATCATGTGAATACAAGAAATTGATTATCTCAATCGTTGCATCCCTTAGCTCAGGTCTAAA 829
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 633 ATCATGTGAATACAAGAAATTGATTATCTCAATCGTTGCATCCCTAAGCTCAGGCCTAAA 574
Query 830 GTCTCCAGCTGATGGAACAGGGTTCGCTTCAGGGGAAAAATAGATGTCTGCGTTGAAAGG 889
| |||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||
Sbjct 573 GCCTCCAGCTGATGGAACCGGGTTCGCTTAAGGTGAAAAATAGATGTCTGCGTTGAAAGG 514
Query 890 AACAGTGACTTTCACATTTTTCAGATCAGCTTCCTCTAGTGCTCGTTGGATGTTGATAAG 949
|||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||| ||
Sbjct 513 AACAGTGACTGTCACACCTTTCAAATCAGCTTCCTCTAATGCTCGTTGGATGTTGATGAG 454
Query 950 AGCTGGTAATGTGAACTCAACGTAAGTTCCATTATATGTCTGAAGGAAAGGCTCGTTTCC 1009
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 AGCTGGTAAAGTGAACTCAACGTAAGTTCCATTATATGTCTGAAGGAAAGGCTCGTTTCC 394
Query 1010 AACAGCTATGTACTTGATGTTGACTCCACCGTTGTAAGAATAAGCAGTAACGTTTTCTTC 1069
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 393 AACAGCTATGTACTTGATGTTGACTCCACCATTGTAAGAATAAGCAGTAACGTTTTCTTC 334
Query 1070 AACCCATGAAGCTGCTACAGATGTATCTTGAGCCATTTCTTTAAGAAACCGGTTTGGTAT 1129
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 333 AACCCACGAAGCTGCTACAGATGTATCTTGAGCCAATTCTTTAAGAAACCGGTTTGGTAT 274
Query 1130 TCCTATCATGACTTCAATGTCTGAGCCAATTAGAGCGTCTAAGATGTTTTGGTCGGCTTC 1189
||| ||||||||||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct 273 TCCGATCATGACTTCGATCTGTGAGCCAATTAGAGCGTCTAAGATGTTTTGGTCGGCTTC 214
Query 1190 AAATAGTTTCAGCTTAGTGAAACTATTGTCCAT-TAGCATCTTCACAACCTTTTCTGGTG 1248
||| ||||||||||||||||||| |||||| | |||||||||||| |||||||||||||
Sbjct 213 AAACAGTTTCAGCTTAGTGAAACCATTGTCT-TGTAGCATCTTCACTACCTTTTCTGGTG 155
Query 1249 GAAGCTGGTGACTCGCCATTATTCCCCAGTTAACTCCTACATTACTCGTGTTGCTTGAGG 1308
|||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||
Sbjct 154 GAAGCTGGTGACTCGCCATTGTTCCCCAGTTAACTCCTACACTACTAGTGTTGCTTGAGG 95
Query 1309 CAATGGAAACTTGTGAGATGATAAGAAA-GTAACAAAGAATAATCTGATGATTATAAAAG 1367
|||||||||||||||||||||||||||| | ||||||||||||||||||||| ||| |||
Sbjct 94 CAATGGAAACTTGTGAGATGATAAGAAATG-AACAAAGAATAATCTGATGATAATAGAAG 36
Query 1368 TGGTTTGTTGTTAACTTTGATCTCTCTCCTGCCAT 1402
||||||||||| ||||||||||||||| |||||||
Sbjct 35 TGGTTTGTTGTCAACTTTGATCTCTCTTCTGCCAT 1
Score = 798 bits (432), Expect = 0.0
Identities = 499/532 (94%), Gaps = 2/532 (0%)
Strand=Plus/Minus
Query 1 CTACAAGATGGGAAGGACCAACATAACTAAAACCGCGGCTGCGACTCTGGTCAACACTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1503 CTACAAGATGGGAAGGACCAACATAACTAAAACCGCGGCTGCGACTCTGGTCAACACTCT 1444
Query 61 TGAAGATCCAGGCTGCAACCTCGTTGAATCTCCTGTATCAATCATTACAGGGAACTCGCA 120
|||||||| ||| |||||||| | ||||| ||||||||||||||| ||||||||||| ||
Sbjct 1443 TGAAGATCGAGGTTGCAACCTTGGTGAATTTCCTGTATCAATCATCACAGGGAACTCACA 1384
Query 121 AAGTTCATCAGATGGATCTTCATCTGTGATCAAACCCAACCCCAAGAAATCGCAGTCCCA 180
||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||
Sbjct 1383 AAGTTCATCAGATGGATCTTCGTCTATTATCAAACCCAACCCCAAGAAATCGCAGTCCCA 1324
Query 181 TGTTTTCTGATCGTGCATCTGATAATACATATTAAAGGCATATGAAACATT-TCCTGTAG 239
||||||||||||||||||||||||||||| |||||| |||||||| |||| || | | |
Sbjct 1323 GGTTTTCTGATCGTGCATCTGATAATACATGTTAAAGACATATGAAGCATTGTC-TATGG 1265
Query 240 CAGTGAGATGGTTACAAGAGGATCCATACCCGAGTGCTGTGCAATCAGACAAACTACAAG 299
|||| |||||||||||||||||||||||||||||||||||||||||||| || |||| |
Sbjct 1264 CAGTAAGATGGTTACAAGAGGATCCATACCCGAGTGCTGTGCAATCAGATAAGCTACCCG 1205
Query 300 CATAGTCGATATTATCAGGCAAGTCATCGAGGTTATATGCATTAGGGTCAAGAATACACC 359
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1204 CATAGTCGATATTATCAGGCAAGTCATCGAGGTTATATGCATTAGGGTCGAGAACACACC 1145
Query 360 AAGTTTTGGGCAGATACTTCACATCTTCCACAGGAACCAAAGGCTTGTCATTTCCTTTAC 419
||||||| |||||||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 1144 AAGTTTTTGGCAGATAGTTAACATCTTCCACAGGAACCAAAGGCTTGTCATTGCCTTTAC 1085
Query 420 CTGACAAGTCAAGCTCATATTTCGGTCTCCCATCAAACTCAAAGATCCCCCAGTGCCTCT 479
|||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||
Sbjct 1084 CTGACAAGTCAAGCTCATATTTCGGTCTCCCATCAAACCCAAAGATCCCCCAATGTCTCT 1025
Query 480 CAAAAGTCCCCGGTGCTATACTCTTGGCGTCCTCATCAACAAGGCTGAAAAG 531
||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1024 CAAAAGTCCCCGGTGCTATACTCTTGGCGTCCTCATCGACAAGGCTGAAAAG 973
> Ahg925686 jgi|Araly1|925686|scaffold_201247.1
Length=269
Score = 248 bits (134), Expect = 8e-65
Identities = 171/187 (91%), Gaps = 9/187 (5%)
Strand=Plus/Minus
Query 778 AATACAAGAAATTGATTATCTCAATCGTTGCATCCCTTA----GCTCAGGTCT-AAAGTC 832
||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||
Sbjct 269 AATACAAGAAATTGATTATCTCAATCGTTGCATCCCTTAATTAGCTCAGG-CTTAAAGTC 211
Query 833 TCCAGCTGATGGAACAGGGTTCGCTTCAGGGGAAAAATAGATGTCTGCGTTGAAAGGAAC 892
|||||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||||||
Sbjct 210 TCCAGCTGATGGAACAGGGTTCCCTTCAGGCGAAAAATAGATATCTGCATTGAAAGGAAC 151
Query 893 AGTGACTTTCA-CATTTTTCAGATCAGCTTCCTCTAGTGCTCGTTGGATGTTGATAAGAG 951
||||||||| | ||||||| |||||||||||||||| |||||||||||||||||| ||||
Sbjct 150 AGTGACTTT-AGCATTTTTAAGATCAGCTTCCTCTAATGCTCGTTGGATGTTGATGAGAG 92
Query 952 CTG-GTA 957
||| |||
Sbjct 91 CTGTGTA 85
> Ahg930973 jgi|Araly1|930973|scaffold_303430.1
Length=229
Score = 117 bits (63), Expect = 2e-25
Identities = 75/80 (94%), Gaps = 3/80 (4%)
Strand=Plus/Minus
Query 579 TTCATCCCCAAGAAGCTATATCTCTCCATAGCACAAATCAAAGTGTCGAGATTC--G-CA 635
||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||
Sbjct 112 TTCATCCCCAAGAAGCTGTATCTCTCCATAGCACAAATCAAAGTGTCGAGATTGATGGCA 53
Query 636 TCAAACACATTGGTGTAGAC 655
||||||||||||||||||||
Sbjct 52 TCAAACACATTGGTGTAGAC 33
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52412177120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5