BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G24332.1 Length=1402 Score E Sequences producing significant alignments: (Bits) Value Ahg479948 jgi|Araly1|479948|fgenesh2_kg.3__2649__AT3G24330.1 1347 0.0 Ahg925686 jgi|Araly1|925686|scaffold_201247.1 248 8e-65 Ahg930973 jgi|Araly1|930973|scaffold_303430.1 117 2e-25 > Ahg479948 jgi|Araly1|479948|fgenesh2_kg.3__2649__AT3G24330.1 Length=1503 Score = 1347 bits (729), Expect = 0.0 Identities = 827/875 (95%), Gaps = 4/875 (0%) Strand=Plus/Minus Query 530 AGCGTTCTTGTCTCCATCCGTAGGCCACCCGACCTCTCCTACAATGATCTTCATCCCCAA 589 |||||||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||| Sbjct 873 AGCGTTCTTGTCTCCATCTGTAGGCCATCCGACTTCTCCTACGATGATCTTCATCCCCAA 814 Query 590 GAAGCTATATCTCTCCATAGCACAAATCAAAGTGTCGAGATTCGCATCAAACACATTGGT 649 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 813 GAAGCTATATTTCTCCATAGCACAAATCAAAGTGTCGAGATTCGCATCAAACACATTAGT 754 Query 650 GTAGACCAAATTTCCATCTCTCAAAGACTTGTTAGTCCCATCAAAGAAGGCAAAATCCAA 709 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 753 GTAGACCAAATTTCCATCTCTCAAAGATTTGTTAGTCCCATCAAAGAAGGCAAAGTCCAA 694 Query 710 AGGAAAGTAAGCATTTCCATAGAGACTAAGAAAAGGGTATATGTTAACCGTGAAAGGCGA 769 ||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| || Sbjct 693 AGGGAAGTAAGCATTTCCATAGAGACTGAGAAAAGGGTAAATGTTGACCGTGAAAGGTGA 634 Query 770 ATCATGTGAATACAAGAAATTGATTATCTCAATCGTTGCATCCCTTAGCTCAGGTCTAAA 829 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 633 ATCATGTGAATACAAGAAATTGATTATCTCAATCGTTGCATCCCTAAGCTCAGGCCTAAA 574 Query 830 GTCTCCAGCTGATGGAACAGGGTTCGCTTCAGGGGAAAAATAGATGTCTGCGTTGAAAGG 889 | |||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||| Sbjct 573 GCCTCCAGCTGATGGAACCGGGTTCGCTTAAGGTGAAAAATAGATGTCTGCGTTGAAAGG 514 Query 890 AACAGTGACTTTCACATTTTTCAGATCAGCTTCCTCTAGTGCTCGTTGGATGTTGATAAG 949 |||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||| || Sbjct 513 AACAGTGACTGTCACACCTTTCAAATCAGCTTCCTCTAATGCTCGTTGGATGTTGATGAG 454 Query 950 AGCTGGTAATGTGAACTCAACGTAAGTTCCATTATATGTCTGAAGGAAAGGCTCGTTTCC 1009 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 453 AGCTGGTAAAGTGAACTCAACGTAAGTTCCATTATATGTCTGAAGGAAAGGCTCGTTTCC 394 Query 1010 AACAGCTATGTACTTGATGTTGACTCCACCGTTGTAAGAATAAGCAGTAACGTTTTCTTC 1069 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 393 AACAGCTATGTACTTGATGTTGACTCCACCATTGTAAGAATAAGCAGTAACGTTTTCTTC 334 Query 1070 AACCCATGAAGCTGCTACAGATGTATCTTGAGCCATTTCTTTAAGAAACCGGTTTGGTAT 1129 |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 333 AACCCACGAAGCTGCTACAGATGTATCTTGAGCCAATTCTTTAAGAAACCGGTTTGGTAT 274 Query 1130 TCCTATCATGACTTCAATGTCTGAGCCAATTAGAGCGTCTAAGATGTTTTGGTCGGCTTC 1189 ||| ||||||||||| || | ||||||||||||||||||||||||||||||||||||||| Sbjct 273 TCCGATCATGACTTCGATCTGTGAGCCAATTAGAGCGTCTAAGATGTTTTGGTCGGCTTC 214 Query 1190 AAATAGTTTCAGCTTAGTGAAACTATTGTCCAT-TAGCATCTTCACAACCTTTTCTGGTG 1248 ||| ||||||||||||||||||| |||||| | |||||||||||| ||||||||||||| Sbjct 213 AAACAGTTTCAGCTTAGTGAAACCATTGTCT-TGTAGCATCTTCACTACCTTTTCTGGTG 155 Query 1249 GAAGCTGGTGACTCGCCATTATTCCCCAGTTAACTCCTACATTACTCGTGTTGCTTGAGG 1308 |||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||| Sbjct 154 GAAGCTGGTGACTCGCCATTGTTCCCCAGTTAACTCCTACACTACTAGTGTTGCTTGAGG 95 Query 1309 CAATGGAAACTTGTGAGATGATAAGAAA-GTAACAAAGAATAATCTGATGATTATAAAAG 1367 |||||||||||||||||||||||||||| | ||||||||||||||||||||| ||| ||| Sbjct 94 CAATGGAAACTTGTGAGATGATAAGAAATG-AACAAAGAATAATCTGATGATAATAGAAG 36 Query 1368 TGGTTTGTTGTTAACTTTGATCTCTCTCCTGCCAT 1402 ||||||||||| ||||||||||||||| ||||||| Sbjct 35 TGGTTTGTTGTCAACTTTGATCTCTCTTCTGCCAT 1 Score = 798 bits (432), Expect = 0.0 Identities = 499/532 (94%), Gaps = 2/532 (0%) Strand=Plus/Minus Query 1 CTACAAGATGGGAAGGACCAACATAACTAAAACCGCGGCTGCGACTCTGGTCAACACTCT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1503 CTACAAGATGGGAAGGACCAACATAACTAAAACCGCGGCTGCGACTCTGGTCAACACTCT 1444 Query 61 TGAAGATCCAGGCTGCAACCTCGTTGAATCTCCTGTATCAATCATTACAGGGAACTCGCA 120 |||||||| ||| |||||||| | ||||| ||||||||||||||| ||||||||||| || Sbjct 1443 TGAAGATCGAGGTTGCAACCTTGGTGAATTTCCTGTATCAATCATCACAGGGAACTCACA 1384 Query 121 AAGTTCATCAGATGGATCTTCATCTGTGATCAAACCCAACCCCAAGAAATCGCAGTCCCA 180 ||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||| Sbjct 1383 AAGTTCATCAGATGGATCTTCGTCTATTATCAAACCCAACCCCAAGAAATCGCAGTCCCA 1324 Query 181 TGTTTTCTGATCGTGCATCTGATAATACATATTAAAGGCATATGAAACATT-TCCTGTAG 239 ||||||||||||||||||||||||||||| |||||| |||||||| |||| || | | | Sbjct 1323 GGTTTTCTGATCGTGCATCTGATAATACATGTTAAAGACATATGAAGCATTGTC-TATGG 1265 Query 240 CAGTGAGATGGTTACAAGAGGATCCATACCCGAGTGCTGTGCAATCAGACAAACTACAAG 299 |||| |||||||||||||||||||||||||||||||||||||||||||| || |||| | Sbjct 1264 CAGTAAGATGGTTACAAGAGGATCCATACCCGAGTGCTGTGCAATCAGATAAGCTACCCG 1205 Query 300 CATAGTCGATATTATCAGGCAAGTCATCGAGGTTATATGCATTAGGGTCAAGAATACACC 359 ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| Sbjct 1204 CATAGTCGATATTATCAGGCAAGTCATCGAGGTTATATGCATTAGGGTCGAGAACACACC 1145 Query 360 AAGTTTTGGGCAGATACTTCACATCTTCCACAGGAACCAAAGGCTTGTCATTTCCTTTAC 419 ||||||| |||||||| || |||||||||||||||||||||||||||||||| ||||||| Sbjct 1144 AAGTTTTTGGCAGATAGTTAACATCTTCCACAGGAACCAAAGGCTTGTCATTGCCTTTAC 1085 Query 420 CTGACAAGTCAAGCTCATATTTCGGTCTCCCATCAAACTCAAAGATCCCCCAGTGCCTCT 479 |||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||| Sbjct 1084 CTGACAAGTCAAGCTCATATTTCGGTCTCCCATCAAACCCAAAGATCCCCCAATGTCTCT 1025 Query 480 CAAAAGTCCCCGGTGCTATACTCTTGGCGTCCTCATCAACAAGGCTGAAAAG 531 ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1024 CAAAAGTCCCCGGTGCTATACTCTTGGCGTCCTCATCGACAAGGCTGAAAAG 973 > Ahg925686 jgi|Araly1|925686|scaffold_201247.1 Length=269 Score = 248 bits (134), Expect = 8e-65 Identities = 171/187 (91%), Gaps = 9/187 (5%) Strand=Plus/Minus Query 778 AATACAAGAAATTGATTATCTCAATCGTTGCATCCCTTA----GCTCAGGTCT-AAAGTC 832 ||||||||||||||||||||||||||||||||||||||| ||||||| || |||||| Sbjct 269 AATACAAGAAATTGATTATCTCAATCGTTGCATCCCTTAATTAGCTCAGG-CTTAAAGTC 211 Query 833 TCCAGCTGATGGAACAGGGTTCGCTTCAGGGGAAAAATAGATGTCTGCGTTGAAAGGAAC 892 |||||||||||||||||||||| ||||||| ||||||||||| ||||| ||||||||||| Sbjct 210 TCCAGCTGATGGAACAGGGTTCCCTTCAGGCGAAAAATAGATATCTGCATTGAAAGGAAC 151 Query 893 AGTGACTTTCA-CATTTTTCAGATCAGCTTCCTCTAGTGCTCGTTGGATGTTGATAAGAG 951 ||||||||| | ||||||| |||||||||||||||| |||||||||||||||||| |||| Sbjct 150 AGTGACTTT-AGCATTTTTAAGATCAGCTTCCTCTAATGCTCGTTGGATGTTGATGAGAG 92 Query 952 CTG-GTA 957 ||| ||| Sbjct 91 CTGTGTA 85 > Ahg930973 jgi|Araly1|930973|scaffold_303430.1 Length=229 Score = 117 bits (63), Expect = 2e-25 Identities = 75/80 (94%), Gaps = 3/80 (4%) Strand=Plus/Minus Query 579 TTCATCCCCAAGAAGCTATATCTCTCCATAGCACAAATCAAAGTGTCGAGATTC--G-CA 635 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| | || Sbjct 112 TTCATCCCCAAGAAGCTGTATCTCTCCATAGCACAAATCAAAGTGTCGAGATTGATGGCA 53 Query 636 TCAAACACATTGGTGTAGAC 655 |||||||||||||||||||| Sbjct 52 TCAAACACATTGGTGTAGAC 33 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52412177120 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5