BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24340.1
Length=3399
Score E
Sequences producing significant alignments: (Bits) Value
Ahg342596 jgi|Araly1|342596|fgenesh1_pg.C_scaffold_3002359 4549 0.0
> Ahg342596 jgi|Araly1|342596|fgenesh1_pg.C_scaffold_3002359
Length=3369
Score = 4549 bits (2463), Expect = 0.0
Identities = 3132/3439 (91%), Gaps = 110/3439 (3%)
Strand=Plus/Plus
Query 1 ATGGATATGACTAGTTGTGTTGCTAGAAGAACTCGTTCGAGGACTGAATCTTACTTGAAC 60
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 ATGGATATGACTACTTGTGTTGCTAGAAGAACTCGTTCAAGGACTGAATCTTACTTGAAT 60
Query 61 TCGATTCTCAATAAATCAAAGGGGATTTCTGGAGAAGAAGAAGATCAGTCTCTGGGTTGT 120
||||||||||||| ||||||||||||| ||||||||| || | | | || ||
Sbjct 61 TCGATTCTCAATAGATCAAAGGGGATTACTGGAGAAG-AG--G---A-T-TC------GT 106
Query 121 GTAAATTCGAGGACTGAGAAGAGGAGAGTTAACATGCGTGATGCTTGTTCACCTTCTCCG 180
||||||||||||| |||||||| ||||| ||||||||| ||||||||||||| ||||||
Sbjct 107 -TAAATTCGAGGACGGAGAAGAGAAGAGTGAACATGCGTAATGCTTGTTCACCGTCTCCG 165
Query 181 AGGAAGAAGAAACGACGGC-G-G--A----GG-AAGGATGAT---GACGACGATGTTGTA 228
||||||||||||||||||| | | | || |||||||| ||||||||||||| |
Sbjct 166 AGGAAGAAGAAACGACGGCGGAGTAAGGTGGGTGAGGATGATGACGACGACGATGTTG-A 224
Query 229 -TTTGTTAGAACTGAATATCCTGAAGGTAAGCGAGATGATGAGAATGTTGGTTCTACTTC 287
||| | |||||||| ||||| ||||||||||| |||| |||||||||||||||||||||
Sbjct 225 GTTTATCAGAACTGATTATCCAGAAGGTAAGCGTGATGGTGAGAATGTTGGTTCTACTTC 284
Query 288 TGGGAATTTACAATCGAAATCGTTTGATTTTGGTGATAGGGTTTGTGATTTTGATGCT-G 346
||||||||| ||||||||||| |||| | | | || ||||||||||| | |
Sbjct 285 TGGGAATTTTGAATCGAAATCGCTTGA------T--T---G-TTCTGATTTTGATG-TGG 331
Query 347 ATGATCGTAATTTGGGATGTGAAGAGA-AAGCTTCTAATTTTAACCCTATAGATGATGAT 405
||||| |||| |||||| ||||||||| || |||||||||||||||| || | |||
Sbjct 332 ATGATGGTAACTTGGGAGGTGAAGAGAGAA-TTTCTAATTTTAACCCTTTATCTCCGGAT 390
Query 406 GATGATGTTGTTTTCGTTGGAACTGTTCAGAGAGAGAATGATCATGTAGAGGATGATGAC 465
|||||||||||||| ||| |||||||| |||||||||||||||||| || || |||||
Sbjct 391 GATGATGTTGTTTTTGTTAGAACTGTTTTGAGAGAGAATGATCATGTTGAAGAGGATGAT 450
Query 466 AATGTTGGTTCTGCTTCGGTGATTTCTCCTAGGGTTTGTGATTTTGATGAGGATGATGCT 525
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||
Sbjct 451 AATGTTGGTTCTGCTTCGGTGATTTCTCCTAGGGTTTGCGATTTTGATGTGGATGGTGCT 510
Query 526 AAAGTGAGTGGT-A-AAGAGAA---C--C-------C-TTTATCTCCGGATGATGATGAT 570
| |||| ||| | ||| || | | | ||||||||||||||||||||||
Sbjct 511 GATTTGAGGGGTGAGGAGAAAACTTCTACTTTGGATCATTTATCTCCGGATGATGATGAT 570
Query 571 GATGTTGTTTTCCTTGGAACT-ATCGCGGGAGAGAATCAGCATGTCGAGGATGTCAATGC 629
||||||||||| |||||||| || | || ||| || | | | ||||||| |||||
Sbjct 571 GATGTTGTTTTTGTTGGAACTGTTC-C-GG-GAG-AT--G--T-T-GAGGATGGCAATGT 620
Query 630 TGGTTCTGAGGTTTGTGATATTCTTCTGGATGATGCTAATTTGAGGGGTGAGGAGAAGAC 689
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 621 TGGTTCTGGGGTTTGTGATATTCTTTTGGATGATGCTAATTTGAGGGGTGAGGAGAAGAC 680
Query 690 TTATGTGTCTGATGAGGTTGTAAGTCTAAGTTCTAGTTCTGATGATGAGGAAGACCCTTT 749
||||| ||||||||||||||| |||||||||| || ||||||||| |||| | | |
Sbjct 681 TTATGAGTCTGATGAGGTTGTGAGTCTAAGTTTTAATTCTGATGACGAGG-A-A-----T 733
Query 750 AGAGGAATTAGGGACTGATTCAAGAGAGGAAGTTAGTGGCGAAGATAGAGATTCTGGTGA 809
| | ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 734 ----G---T-GGGACTGATTCTGGAGAGGAAGTTAGTGGCGAAGATAGAGATTCTGGTGA 785
Query 810 GAGTGATATGGATGAAGATGCTAATGATTCTGACTCATCTGATTACGTGGGGGAAAGTTC 869
|| ||||||| |||||||||||||||| | | ||||| || || ||| |||||||||
Sbjct 786 GATTGATATGAATGAAGATGCTAATGA--C---C-CATCTTATAACATGGAGGAAAGTTC 839
Query 870 AGATTCTTC-TGATGTA-GAGAGCTCTGATAGTGATTTCGTTTGTTCTGAGGATGAAGAG 927
|||| |||| || || | |||||||||||||||||||||||| |||||||||||||||||
Sbjct 840 AGATCCTTCTTG-TG-AGGAGAGCTCTGATAGTGATTTCGTTCGTTCTGAGGATGAAGAG 897
Query 928 GGTGGTACCAGAGACGA-TGCTACATGCGAAAAGAACCCAAGTGAAAAAGTATACCATCA 986
||||||||| ||||| | ||||| | ||||||||||||||||||||||||||||| | ||
Sbjct 898 GGTGGTACCGGAGAC-ATTGCTAAAGGCGAAAAGAACCCAAGTGAAAAAGTATACTACCA 956
Query 987 TAAGAAGTCGAGGACTTTTCGTAGGAAGCATAACTTCGATGTAATTAACCTGCTAGCTAA 1046
||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 957 AAAGAAGTCGAGGAGTTTTCGTAGGAAGCATAACTTGGAAGTAATTAACCTGCTAGCTAA 1016
Query 1047 ATCTATGTT-GGAGAGCAAAGACGTTTTCAAGGAAGATATTTTCTCCTGGGACAAAATAG 1105
|||||| || ||||||||||||||||||||||||||| |||| |||| |||||||||| |
Sbjct 1017 ATCTAT-TTGGGAGAGCAAAGACGTTTTCAAGGAAGACATTTGCTCCGGGGACAAAATGG 1075
Query 1106 CAGAGGTTGATTCTAGAGAAGATCCTGTAGTTAGGGAGAGCTCAAGTGAGAAGGTAAATG 1165
||||||||||||||||||||||| | || |||||||||||||||||| ||||||||||
Sbjct 1076 CAGAGGTTGATTCTAGAGAAGATGGTATAAATAGGGAGAGCTCAAGTGAAAAGGTAAATG 1135
Query 1166 AACATGGGAAACCAAGGGAACGGAGGAGTTTCCATAGGGTGAGGGAGAAGAACCACTTGA 1225
|||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1136 AACAGGGGAAACCAAGGGAACCGAGGAGTTTCCATAGGGCGAGGGAGAAGAACCACTTGA 1195
Query 1226 ATGGTGAGAGTTTTTATGGTGGCGAAAAACTCTGTGATGGAGAAGAGACAATAAACTACT 1285
|||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||
Sbjct 1196 ATGGTGAGAGTTTTTATGGTGGCGAAAATCTATGTGATGGAGAAGAGACAATACACTACT 1255
Query 1286 CGACAGAAGATTCACCTCCTTTAAACTTGAGATTTGGCTGCGAGGAGCCTGTGCTTATCG 1345
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 CGACAGAAGATTCACCTCCATTAAACTTGAGATTTGGCTGCGAGGAGCCTGTGCTTATCG 1315
Query 1346 AGAAAACAGAAGAGGAGAAAGAATTAGACAGCTTGTGGGAAGATATGAACGTTGCTCTAA 1405
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1316 AGAAAACAGAAGAGGAGAAAGAATTAGACAGCTTGTGGGAAGATATGGCCGTTGCTCTAA 1375
Query 1406 CATTGGAAGGAATGCACTCATCTACCCCTGATAAAAATGGAGATATGCTATGTAGCAAAG 1465
|||||||||||||| |||||||||| |||| |||||||||||||| ||||||||||||||
Sbjct 1376 CATTGGAAGGAATGAACTCATCTACTCCTGCTAAAAATGGAGATAAGCTATGTAGCAAAG 1435
Query 1466 GGACACACGACTTTGTCCTGGATGATGAAATCGGTTTGAAATGCGTCCACTGTGCGTATG 1525
|||| |||||||||||||||||||| |||||||||||||||||| |||||||| ||||||
Sbjct 1436 GGACGCACGACTTTGTCCTGGATGAGGAAATCGGTTTGAAATGCCTCCACTGTTCGTATG 1495
Query 1526 TGGCTGTCGAGATCAAAGACATCTCACCAGCCATGGACAAGTATCGTCCTAGTGTTAATG 1585
||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1496 TGGCTGTCGAGATCAAAAACATCTCACCAGCTATGGTCAAGTATCGTCCTAGTGTTAATG 1555
Query 1586 ACAATAAGAAATGTAGTGATAGAAAGGGTGACCCTTTACCTAACAGGCTTGAGTTTGATG 1645
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1556 ACAATAAAAAATGTAGTGATAAAAAGGGTGACCCTTTACCTAACAGGCTTGAGTTTGATG 1615
Query 1646 CTTCAGATCCCAGCAGTTTTGTCGCCCCTTTGGATAATATAGAAGGAACTGTCTGGCAAT 1705
||||||||||||||||| || | |||||||||| || | ||||||||||||||||| ||
Sbjct 1616 CTTCAGATCCCAGCAGTCATGACACCCCTTTGGAGAAGACAGAAGGAACTGTCTGGCGAT 1675
Query 1706 ACGTCCCTGGCATCAAAGATACTTTGTACCCACACCAACAAGAAGGGTTTGAATTTATTT 1765
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1676 ACGTCCCTGGCATCAAAGATACTTTGTACCCACACCAACAAGAAGGCTTTGAATTTATTT 1735
Query 1766 GGAAGAATTTAGCTGGGACAACAAAAATTAATGAGTTGAACAGCGTAGGGGTTAAGGGAA 1825
||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1736 GGAAGAACTTAGCCGGGACAACAAAACTTAATGAGTTGAACAGCGTAGGGGTTAAGGGAA 1795
Query 1826 GTGGCGGATGCATTATTTCGCATAAGGCTGGAACTGGTAAGACACGTTTGACCGTCGTTT 1885
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1796 GTGGCGGATGCATTATTTCGCATAAGGCTGGAACTGGTAAGACACGCTTGACCATCGTTT 1855
Query 1886 TTCTTCAGTCATACTTAAAACGGTTTCCAAATAGCCATCCTATGGTCATAGCTCCTGCAA 1945
||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1856 TTCTTCAGTCATACTTAGAACGGTTTCCAGATAGTCATCCTATGGTCATAGCTCCTGCAA 1915
Query 1946 CTCTAATGCGTACTTGGGAAGACGAAGTCAGGAAATGGAACGTAAACATTCCATTTTATA 2005
|||||||||||| |||||||| ||| ||||||||||||||| ||| |||||||||||||
Sbjct 1916 ATCTAATGCGTACGTGGGAAGAAGAATTCAGGAAATGGAACGCAAATATTCCATTTTATA 1975
Query 2006 ACATGAATAGTCTGCAGTTATCAGGGTATGAGGATGCTGAAGCTGTCTCACGTTTAGAGG 2065
| |||||||||| |||||| |||||| ||||||| | ||||||||||||| |||||||||
Sbjct 1976 ATATGAATAGTCCGCAGTTCTCAGGGCATGAGGACGTTGAAGCTGTCTCATGTTTAGAGG 2035
Query 2066 GAAATAGGCATCATAATTCCATCCGTATGGTTAAGCTAGTTTCGTGGTGGAAGCAGAAAA 2125
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2036 GAGATAGGCATCATAATTCCATCCGTATGGTTAAGCTAGTTTCGTGGTGGAAGCAGAAAA 2095
Query 2126 GCATTCTTGGAATTAGCTACCCTCTGTATGAGAAGCTCGCGGCAAATAAGAACACTGAAG 2185
||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 2096 GCATTCTTGGAGTTAGCTACCCTCTGTATGAGAAGCTCGCAACAAATAAGAACGCTGAAG 2155
Query 2186 GAATGCAAGTGTTTAGGAGGATGTTGGTAGAATTGCCGGGGTTGCTGGTCCTTGACGAGG 2245
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2156 GAATGCAAGTGTTTAGAAGGATGTTGGTAGAATTGCCGGGGTTGCTGGTCCTTGACGAGG 2215
Query 2246 GCCACACCCCGAGAAACCAGAGTAGTCTCATTTGGAAAGTGCTTACTGAAGTCAGAACAG 2305
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2216 GCCACACCCCGAGAAACCAGAATAGTCTCATTTGGAAAGTGCTTACTGAAGTCAGAACAG 2275
Query 2306 AAAAGCGTATCTTTCTTTCAGGGACACTGTTCCAGAATAATTTCAAGGAACTTTCTAACG 2365
||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 2276 AAAAGCGTATCATTCTTTCAGGGACACTGTTCCAGAATAATTTCAAGGAGCTCTCTAACG 2335
Query 2366 TCTTATGCCTGGCAAGACCAGC-TGATAAAGATACGATTTCTTCGAGGATACATGAACTT 2424
|||||||||||||||||||||| || ||||||||||||||| |||||| |||||||||||
Sbjct 2336 TCTTATGCCTGGCAAGACCAGCTTG-TAAAGATACGATTTCGTCGAGGCTACATGAACTT 2394
Query 2425 AGCAAGTGTAGCCAAGAAGGAGAACACGGAAGGGTGAATGAGGAAAACAGAATTGTGGAT 2484
| |||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 2395 ATCAAGTGCAGCCAAGAAGGAGAACACGGAAGGGTGAATGAAGAAAATAGAATTGTGGAT 2454
Query 2485 CTTAAGGCTATGATTGCTCATTTTGTGCATGTCCATGAAGGA-ACCATCCTTCAAGAAAG 2543
||||||||| ||||||| | ||||||||||||||| |||||| | ||| |||||||||||
Sbjct 2455 CTTAAGGCTGTGATTGCCCCTTTTGTGCATGTCCACGAAGGAGA-CATTCTTCAAGAAAG 2513
Query 2544 CCTTCCAGGTCTAAGAGACTGTGTTGTCGTGTTGAACCCGCCTTTTCAACAGAAGAAAAT 2603
||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 2514 CCTTCTAGGTCTAAGAGACTGTGTTCTGGTGTTGAACCCGCCTTTTCAACAGAAGAAAAT 2573
Query 2604 TCTTGACAGAATTGACACTTCTCAAAACACATTTGAATTTGAGCACAAGCTTTCAGCTGT 2663
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2574 TCTGGACAGAATTGACACTTCTCAAAACACATTTGAATTTGAGCACAAGCTTTCAGCTGT 2633
Query 2664 TTCAGTACACCCATCTCTGTATTTGTGCTGCAATCCGACCAAGAAGGAAGACTTGGTTAT 2723
|||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||
Sbjct 2634 TTCAGTACACCCATCTCTGTATTTGTGCTGTAATCCGACGAAGAAGGAAAACTTGGTTAT 2693
Query 2724 TGGGCCAGCAACATTAGGAACTCTCAAGAGGCTTAGACTTAAATACGAGGAAGGTGTGAA 2783
||||||||||||||||| |||||| |||| |||||||||||| ||| |||||||||||||
Sbjct 2694 TGGGCCAGCAACATTAGAAACTCTGAAGAAGCTTAGACTTAAGTACAAGGAAGGTGTGAA 2753
Query 2784 AACAAAGTTCCTTATCGACTTCATCCGCATCAGTGGAACCGTGAAAGAGAAAGTGTTGGT 2843
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2754 AACAAAGTTCCTTATCGACTTCATCCGCATCAGTGGAACCATGAAAGAGAAAGTGTTGGT 2813
Query 2844 GTATAGCCAATATATTGACACTCTGAAGCTGATCATGGAGCAGCTCA-TTGCAGAATGTG 2902
|||||||||||| ||||||||||| |||||||||||||||||||||| || || || |
Sbjct 2814 GTATAGCCAATACATTGACACTCTAAAGCTGATCATGGAGCAGCTCAGTT-TAGTAT-TT 2871
Query 2903 A-CTGGACTGAAGGGGAACAAATTCTCTTGATGCATGGTAAAGTTGAACAAAGAGACAGG 2961
| ||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 2872 AGCTGGAAAGAAGGGGAAGAAATTCTCTTTATGCATGGTAAAGTTGAACAAAGAGACAGG 2931
Query 2962 CAGCATATGATCGACAACTTCAACAAACCAGACAGTGGATCTAAAGTTCTACTGGCATCA 3021
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2932 CAGCATCTGATCGACAACTTCAACAAACCAGACAGTGGATCTAAAGTTCTACTGGCATCA 2991
Query 3022 ACAAAAGCATGTTCTGAGGGTATCAGTCTTGTTGGCGCTTCAAGAGTTGTGATTCTTGAT 3081
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2992 ACAAAAGCATGTTCCGAGGGTATCAGTCTTGTTGGCGCTTCAAGAGTTGTGATTCTTGAT 3051
Query 3082 GTTGTTTGGAACCCTTCTGTTGAAAGCCAAGCCATAAGTCGAGCTTTCAGAATTGGTCAA 3141
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 3052 GTTGTTTGGAACCCTTCTGTTGAAAGCCAAGCCATAAGTCGGGCTTTCAGACTTGGTCAA 3111
Query 3142 AAGCGTGCTGTGTTCATTTACCATCTCATGGTCAAAGACACATCTGAGTGGAACAAGTAC 3201
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 3112 AAGCGTGCTGTGTTCATTTACCATCTCATGGTGAAAGACACATCTGAGTGGAACAAGTAC 3171
Query 3202 TGTAAGCAAAGTGAGAAACATCGCATATCCGAACTGGTCTTCTCTTCTACCAATGAGAAG 3261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3172 TGTAAGCAAAGTGAGAAACATCGCATATCCGAACTGGTCTTCTCTTCTACCAATGAGAAG 3231
Query 3262 GACAAGCCGATTAACAACGAAGTTGTTTCCAAAGATAGAATCCTCGACGAGATGGTTCGG 3321
|| |||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 3232 GATAAGCCGATCAACAACGAAGTTGATTCCGAAGATAGAATCCTCGACGAGATGGTTCGA 3291
Query 3322 CACGAGAAGCTGAAACACATATTTGAGAAGATACTTTATCACCCAAA-GAAATCTGACAT 3380
|||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||
Sbjct 3292 CACGAGAAGCTGAAACACATCTTTGAGAAGATACTTTATCACCCAAAAGAA-TCTGACAT 3350
Query 3381 GAATACCAGCTTCTTCTGA 3399
| ||||||||||||||||
Sbjct 3351 GTTTACCAGCTTCTTCTGA 3369
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128330136156
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5