BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24350.2
Length=1511
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481441 jgi|Araly1|481441|fgenesh2_kg.4__501__AT3G24350.1 1227 0.0
Ahg930528 jgi|Araly1|930528|scaffold_302985.1 1140 0.0
> Ahg481441 jgi|Araly1|481441|fgenesh2_kg.4__501__AT3G24350.1
Length=1076
Score = 1227 bits (664), Expect = 0.0
Identities = 793/856 (93%), Gaps = 6/856 (1%)
Strand=Plus/Plus
Query 412 TTGCAAAGAGGACATCAGTGTTTGATGATCCTACTCAGGAGATACAAGAGCTGACGGTAG 471
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct 227 TTGCAAAGAGGACATCAGTTTTTGATGATCCGACTCAGGAGATACAAGAGCTGACAGTAG 286
Query 472 TCATCAAGCAAGAGATCTCTGCTCTAAATTCTGCTCTGGTCGACCTTCAATTGTTCCGCA 531
||||||||||||||||||||||||||||| |||||||| ||||||| ||| |||| || |
Sbjct 287 TCATCAAGCAAGAGATCTCTGCTCTAAATACTGCTCTGCTCGACCTGCAAGTGTTTCGTA 346
Query 532 GTTCTCAGAATGATGAAGGGAATAACTCTAGAGACAGGGACAAAAGTACTCACTCAGCAA 591
| |||||||||||||||||||| |||||| || | || |||| ||||||||||||||
Sbjct 347 GCTCTCAGAATGATGAAGGGAACAACTCT--AG--A--GATAAAACTACTCACTCAGCAA 400
Query 592 CTGTTGTTGACGATCTAAAGTATCGTTTGATGGATACTACCAAAGAGTTTAAGGATGTTC 651
| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 401 CAGTTGTTGACGATCTTAAGTATCGGCTGATGGATACTACCAAAGAGTTTAAGGATGTTC 460
Query 652 TTACCATGAGAACCGAGAATATGAAGGTCCATGAAAGTAGAAGGCAACTCTTCTCTTCAA 711
||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||
Sbjct 461 TTACCATGAGAACCGAGAACATGAAGGTCCATGAAAATCGAAGGCAACTCTTCTCTTCAA 520
Query 712 ATGCTTCAAAAGAATCAACAAACCCATTCGTTCGCCAGCGTCCTTTGGCTGCTAAGGCTG 771
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 521 ATGCGTCAAAAGAATCAACAAACCCATTCGTTCGCCAGCGCCCTTTGGCTGCTAAGGCTT 580
Query 772 CTGCTAGTGAATCTGTTCCTCTTCCATGGGCAAATGGGTCTTCTTCATCTTCATCTCAGT 831
||||||||||||||| ||||||||||||||| |||| |||||||||||| ||||| ||||
Sbjct 581 CTGCTAGTGAATCTGCTCCTCTTCCATGGGCGAATGCGTCTTCTTCATCGTCATCGCAGT 640
Query 832 TAGTCCCATGGAAGCCGGGAGAGGGAGAATCTTCACCATTGTTGCAGCAGAGTcaacaac 891
||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||
Sbjct 641 TAGTCCCATGGAAGCAGGGAGAGGCCGAATCTGCACCATTGTTGCAGCAGAGTCAACAAC 700
Query 892 aacagcaacagcaacagcaacaaATGGTCCCATTGCAAGACACATATATGCAGGGTCGAG 951
|||| || ||||| |||||||| ||||||||||||||||| |||||||||||| | ||||
Sbjct 701 AACAACAGCAGCAGCAGCAACAGATGGTCCCATTGCAAGATACATATATGCAGAGCCGAG 760
Query 952 CAGAAGCTCTACACACCGTTGAATCAACAATCCATGAGCTAAGCAGTATCTTCACACAAC 1011
| ||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||
Sbjct 761 CTGAAGCTCTACACAATGTCGAATCAACAATCCATGAGCTAAGCAATATCTTCACACAAC 820
Query 1012 TAGCAACCATGGTTTCTCAACAAGGGGAAATTGCAATCAGGATCGATCAAAACATGGAAG 1071
||||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||||||
Sbjct 821 TAGCAACCATGGTTTCTCAGCAAGGGGAGATTGCTATCAGAATCGATCAAAACATGGAAG 880
Query 1072 ATACATTAGCAAATGTGGAAGGCGCACAGAGCCAACTGGCCAGGTATCTCAACAGTATAT 1131
|||||||||| ||||||||||||||||||||||| || ||||||||||| ||||| ||||
Sbjct 881 ATACATTAGCGAATGTGGAAGGCGCACAGAGCCAGCTTGCCAGGTATCTAAACAGCATAT 940
Query 1132 CATCAAACCGATGGCTAATGATGAAGATTTTCTTCGTACTCATTGCATTTCTCATGATTT 1191
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 CGTCAAACCGATGGCTGATGATGAAGATTTTCTTCGTACTCATTGCATTTCTCATGATTT 1000
Query 1192 TCCTCTTCTTCGTGGCATAAACATTGAGACTAAAAATTGATTTTAAAGAGTTTCAACATC 1251
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1001 TCCTCTTCTTCGTGGCGTAAACATTGAGACTAAAAATTGACTTTAAAGAGTTTCAACATC 1060
Query 1252 TAGACATGGTTCTTTT 1267
||||||||||||||||
Sbjct 1061 TAGACATGGTTCTTTT 1076
> Ahg930528 jgi|Araly1|930528|scaffold_302985.1
Length=1070
Score = 1140 bits (617), Expect = 0.0
Identities = 756/822 (92%), Gaps = 14/822 (2%)
Strand=Plus/Plus
Query 412 TTGCAAAGAGGACATCAGTGTTTGATGATCCTACTCAGGAGATACAAGAGCTGACGGTAG 471
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct 260 TTGCAAAGAGGACATCAGTTTTTGATGATCCGACTCAGGAGATACAAGAGCTGACAGTAG 319
Query 472 TCATCAAGCAAGAGATCTCTGCTCTAAATTCTGCTCTGGTCGACCTTCAATTG-TTCCGC 530
|||| |||||||||||||||||||||||| ||||| || | ||||||||| || || ||
Sbjct 320 TCATTAAGCAAGAGATCTCTGCTCTAAATACTGCTTTGCTTGACCTTCAAGTGCTT-CGT 378
Query 531 AGTTCTCAGAATGATGAAGGGAATAACTCTAGAGACAGGGACAAAAGTACTCACTCAGCA 590
|| || ||||||| |||| ||| || ||||||||| ||| | ||||||||| ||
Sbjct 379 AGCTCCCAGAATGGCGAAGAGAACAATTCTAGAGAC----ACATCA--ACTCACTCAACA 432
Query 591 ACTGTTGTTGACGATCTAAAGTATCGTTTGATGGATACTACCAAAGAGTTTAAGGATGTT 650
|| |||||||||| ||||||| |||| ||||||||||||||||||| ||||||||||||
Sbjct 433 ACAGTTGTTGACGTTCTAAAGAATCGCCTGATGGATACTACCAAAGATTTTAAGGATGTT 492
Query 651 CTTACCATGAGAACCGAGAATATGAAGGTCCATGA-AAGTAGAAGGCAACTCTTCTCTTC 709
||||| ||||| |||||||| |||||| ||||||| || | |||||||||||||||||||
Sbjct 493 CTTACTATGAGGACCGAGAACATGAAGATCCATGAGAA-TCGAAGGCAACTCTTCTCTTC 551
Query 710 AAATGCTTCAAAAGAATCAACAAACCCATTCGTTCGCCAGCGTCCTTTGGCTGCTAAGGC 769
||| ||||| ||||||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 552 AAACGCTTCTAAAGAATCAACAAACCCGTTTGTTCGCCAGCGGCCTTTGGCTGCTAAGGC 611
Query 770 TGCTGCTAGTGAATCTGTTCCTCTTCCATGGGCAAATGGGTCTTCTTCATCTTCATCTCA 829
||||||||||||||||| ||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 612 TGCTGCTAGTGAATCTGCTCCTCTTCCATGGGCGAATGGGTCTTCGTCATCGTCATCTCA 671
Query 830 GTTAGTCCCATGGAAGCCGGGAGAGGGAGAATCTTCACCATTGTTGCAGCAGAGTcaaca 889
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 672 GTTAGTCCCATGGAAGCAGGGAGAGGGCGAATCTTCACCATTGTTGCAGCAGAGTCAACA 731
Query 890 acaacagcaacagcaacagcaacaaATGGTCCCATTGCAAGACACATATATGCAGGGTCG 949
|| | | |||||||||||||| ||||||||||||||||||||||||||||||||| | ||
Sbjct 732 AC-A-A-CAACAGCAACAGCAGCAAATGGTCCCATTGCAAGACACATATATGCAGAGCCG 788
Query 950 AGCAGAAGCTCTACACACCGTTGAATCAACAATCCATGAGCTAAGCAGTATCTTCACACA 1009
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 AGCCGAAGCTCTACACAACGTTGAATCAACAATCCATGAGCTAAGCAGTATCTTCACACA 848
Query 1010 ACTAGCAACCATGGTTTCTCAACAAGGGGAAATTGCAATCAGGATCGATCAAAACATGGA 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 ACTAGCAACCATGGTTTCTCAACAAGGGGAAATTGCAATCAGGATCGATCAAAACATGGA 908
Query 1070 AGATACATTAGCAAATGTGGAAGGCGCACAGAGCCAACTGGCCAGGTATCTCAACAGTAT 1129
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 909 AGATACATTAGCTAATGTGGAAGGCGCACAGAGCCAACTGGCCAGGTATCTCAACAGCAT 968
Query 1130 ATCATCAAACCGATGGCTAATGATGAAGATTTTCTTCGTACTCATTGCATTTCTCATGAT 1189
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 969 ATCGTCAAACCGATGGCTGATGATGAAGATTTTCTTCGTACTCATTGCATTTCTCATGAT 1028
Query 1190 TTTCCTCTTCTTCGTGGCATAAACATTGAGACTAAAAA-TTG 1230
|||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1029 TTTCCTCTTCTTCGTGGCGTAAACATTGAGACTAAAAAATTG 1070
Score = 316 bits (171), Expect = 2e-85
Identities = 230/257 (89%), Gaps = 10/257 (4%)
Strand=Plus/Plus
Query 115 GAGGAAGAATAATGTCGGCAAGGCATGGGCAATCGTCGTATCGAGATCGGAGTGACG-AA 173
||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||
Sbjct 11 GAGGAAGAATAATGTCGGCAAGGCATGGGCAATCGTCGTATCGAGATCGGAC-GAAGGAA 69
Query 174 TTCTTCAAAATTGTGGAGACTCTAAGGAGATCGATTGCTCCGGCTCCGGCGGCGAATAAT 233
|||||| | || || |||| |||||||||||||||| ||||||| |||| |||| |
Sbjct 70 TTCTTCGATATCGTTGAGAGTCTAAGGAGATCGATTACTCCGGC---GGCG---AATATT 123
Query 234 GTGCCGTATGGTAATAATCGGAACGATGGTGCGAGAAGAGAGGATCTTATCAACAAATCC 293
|| ||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||
Sbjct 124 GTACCGTATGGTAATAGTAGGAACGATGGTTCGAGAAGAGAGGATCTTATCAACAAATCC 183
Query 294 GAGTTCAACAAGAGAGCTTCTCATATTGGTTTAGCTATTAATCAAACGTCGCAGAAGCTA 353
||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 184 GAGTTCAACAATAGAGCTTCTAAGATTGGTTTAGCTATTAATCAAACGTCGCAGAAGCTT 243
Query 354 TCGAAGCTT-GCGAAAC 369
|||||| || |||||||
Sbjct 244 TCGAAG-TTAGCGAAAC 259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56564013825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5