BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24360.1
Length=1393
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930529 jgi|Araly1|930529|scaffold_302986.1 1930 0.0
Ahg332986 jgi|Araly1|332986|fgenesh1_pm.C_scaffold_9000014 1147 0.0
Ahg900061 jgi|Araly1|900061|Al_scaffold_0004_711 420 2e-116
> Ahg930529 jgi|Araly1|930529|scaffold_302986.1
Length=1293
Score = 1930 bits (1045), Expect = 0.0
Identities = 1203/1280 (94%), Gaps = 8/1280 (1%)
Strand=Plus/Plus
Query 12 GTGGAATTAGGAATCACAGTGATGATCAAGAGTTTATCTCTGGCTTCTGCTCGCATCTTC 71
|||||||| |||||||||||||||||| | || | || ||||||||||||||||||||
Sbjct 1 GTGGAATTGGGAATCACAGTGATGATC-A-AG---A-CTTTGGCTTCTGCTCGCATCTTC 54
Query 72 TTCTCTAGAACCTCTCCATCTTTTCTTATTCCCTTCTCAAAGCTCTCTGTATCTCATCGT 131
||||||| |||||||||||||||||||| |||| |||| |||||||||||||| |||||
Sbjct 55 TTCTCTAAAACCTCTCCATCTTTTCTTACTCCCCTCTCTAAGCTCTCTGTATCACATCGC 114
Query 132 CGGAAATTCTCAGTAATGGCCAGTGGAAGCGACGAGTTCGTGAAAGGAAATGTTTATCCA 191
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 115 CGGAAATTCTCAGTGATGGCCAATGGAAGCGACGAGTTCGTGAAAGGAAATGTTTATCCA 174
Query 192 AATGGCGTTGCTCTCATTACTCTTGATCGACCTAAAGCTCTCAACGCCATGAATCTAGAA 251
|||||||||||| |||| ||||||| | ||||||||||||||||||||||||||||||||
Sbjct 175 AATGGCGTTGCTTTCATCACTCTTGTTTGACCTAAAGCTCTCAACGCCATGAATCTAGAA 234
Query 252 ATGGATTTGAAGTACAAAAGCTTGCTTGATGAATGGGAATATGATCCTGGAGTCAAATGT 311
|||||||||||||||||||||||||||||||||||||||| ||| ||| | |||||||||
Sbjct 235 ATGGATTTGAAGTACAAAAGCTTGCTTGATGAATGGGAATCTGACCCTAGTGTCAAATGT 294
Query 312 GTTGTCGTCGAAGGAAGCACATCTCGGGCCTTTTGTGCAGGAATGGATATTAAAGGAGTT 371
||||| || ||||| |||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 295 GTTGTTGTTGAAGGCAGCACACCTCGGGCCTTTTGTGCAGGGATGGATATTAAAGGAGTT 354
Query 372 GTTGCAGAGATCCTAATGGACAAAAATACGTCTCTTGTGCAAAAGGTATTTACAGCTGAG 431
|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 355 GTTGCAGAGATCCTAATGGACAAAAACACGTCTCTTGTGAAAAAGGTATTTACAGCTGAA 414
Query 432 TATAGCCTGATATGCAAGATTGCTGGATACAGAAAA-CCATATATCTCTTTAATGGATGG 490
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 415 TATAGCCTGATATGCAAGATTGCTGGATACA-AAAAGCCATATATCTCTTTAATGGATGG 473
Query 491 CATAACAATGGGATTTGGTCTTGGTCTTTCTGGACATGGACGCTACCGAGTGATAACAGA 550
||||||||||||||||||||| || || ||||||||||| |||||||| |||||||||||
Sbjct 474 CATAACAATGGGATTTGGTCTAGGCCTCTCTGGACATGGTCGCTACCGCGTGATAACAGA 533
Query 551 GAGGACGGTCCTCGCAATGCCAGAAAATGGAATCGGCTTGTTTCCAGATGTTGGATTTTC 610
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 534 GAGGACGGTCCTCGCAATGCCAGAAAATGGAATCGGCTTGTTTCCGGATGTTGGATTTTC 593
Query 611 ATATATTGCAGCTCATAGCCCTGGCGAAGGATCTGTTGGTGCTTACCTAGGTATGACTGG 670
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 594 ATATATAGCAGCTCATAGCCCTGGCGAAGGATCTGTTGGTGCTTACCTTGGTATGACTGG 653
Query 671 GAGAAGGATTTCCACACCTTCAGATGCACTGTTTGTGGGTCTTGGGACACATTATGTACC 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GAGAAGGATTTCCACACCTTCAGATGCACTGTTTGTGGGTCTTGGGACACATTATGTACC 713
Query 731 ATCTGGAAAGCTAGGTTCACTCAGAGAAGCCATTTTGTCAGCTGACCTTTCCAAGGATCC 790
||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 714 ATCTGGAAAGCTAGGGTCACTCAAAGAAGCCATTTTGTCAGCTGACATTTCCAAGGATCC 773
Query 791 CCAACAACACATCCAAGCAACTTTATCAAATTACAGCAGTGATCCTGAAACTGAGTCCCA 850
||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 774 CCATCAACACATCCAAGCAACTTTATCAAATTACAGCAGTGATCCTGAATCTGAATCCCA 833
Query 851 CCTCCAAATGCTTTTGCCTCAGATAGAATCAGCTTTTAGTGTAAGTAAGTCTGTTAAGGA 910
|||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 834 CCTCAAAATGCTTTTGCCTCAGATAGAATCAGCTTTTACTGCAAGTAAGTCTGTTAAGGA 893
Query 911 AACAATAGAAGAGCTGAAAAAGTTCCAGCAGAGCAGTGAGGCTTCAGTTGCAGAATGGGC 970
||| |||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||
Sbjct 894 AACTATAGAAGAGCTGAAGAAGTACCAGCAGAGCACTGAGGCTTCAGTTGCAGAATGGGC 953
Query 971 TAATGAAGCAGTCCAAGGCATTGAAAAAGGGGCACCTTTTTCTCTTTACCTAACACACAA 1030
|||||||||| |||||||| |||||||||| ||||| |||||||||||||||||||| ||
Sbjct 954 TAATGAAGCACTCCAAGGCCTTGAAAAAGGTGCACCGTTTTCTCTTTACCTAACACATAA 1013
Query 1031 GTACTTCTCCAAAGTTGCTTGTGCCAAGGGTAAAACCAACAACGCCATGGCAACACTTAA 1090
||||||||| ||||||||| ||||||||||||||||||||||| | ||| ||||||||||
Sbjct 1014 GTACTTCTCGAAAGTTGCTGGTGCCAAGGGTAAAACCAACAACACAATGACAACACTTAA 1073
Query 1091 CGGTGTGATGATAACTGAGTACCGCATTGCTCTAAGATCTGCATTGCGCAGTGATTTCAC 1150
||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1074 CGGTGTGATGAAAACTGAGTACCGCATTGCTCTAAGATCTGCATTGCGTAATGATTTCAC 1133
Query 1151 TGAAGGTGTTAGAGCAGTCTTGACTGACAAGGACCAGAATCCGAAATGGAAACCAGCGAG 1210
||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||
Sbjct 1134 TGAAGGTGTTAGAGCAGTCTTGATTGACAAGGATCAGAACCCGAAATGGAAACCAGCGAG 1193
Query 1211 CTTAGACGAAGTAGATGAAACCGAAGTGGACGCGCTCTTTATGCCATTAAGTCCTGAATT 1270
||||||||| ||||||| |||||||||||| || ||||||| ||||||||||||||||||
Sbjct 1194 CTTAGACGAGGTAGATGTAACCGAAGTGGATGCTCTCTTTAAGCCATTAAGTCCTGAATT 1253
Query 1271 TGAAGAGCTAAACGTATGAA 1290
|||||||||||||||||||
Sbjct 1254 GGAAGAGCTAAACGTATGAA 1273
> Ahg332986 jgi|Araly1|332986|fgenesh1_pm.C_scaffold_9000014
Length=1257
Score = 1147 bits (621), Expect = 0.0
Identities = 1004/1185 (85%), Gaps = 41/1185 (3%)
Strand=Plus/Plus
Query 127 ATCGTCGGAAATTCTCAGTAATGGCC--AG-TGGAAG-CGACGAGTTCGTGAAAGGAAAT 182
|||||||||||||||||| |||||| || ||| | |||||| ||||| |||||||||
Sbjct 92 ATCGTCGGAAATTCTCAGCGATGGCCGGAGCTGG-CGTCGACGATTTCGTTAAAGGAAAT 150
Query 183 GTTTATCCAAATGGCGTTGCTCTCATTACTCTTGATCG-ACCTAAAGCTCTCAACGCCAT 241
|||| ||| ||||| || |||||||| ||||| ||||| ||| |||||||||||||||||
Sbjct 151 GTTTTTCCGAATGGTGTCGCTCTCATCACTCTCGATCGTACC-AAAGCTCTCAACGCCAT 209
Query 242 GAATCTAGAAATGGAT-TTGAAGTACAAAAGCTTGCTTGATGAATGGGAATATGATCCTG 300
|||||| || |||||| || ||||| |||||||| ||||| |||||||||| |||||| |
Sbjct 210 GAATCTTGATATGGATATT-AAGTATAAAAGCTTTCTTGACGAATGGGAATCTGATCC-G 267
Query 301 -GAGTCAAATGTGTTGTCGTCGAAGGAAGCACATCTCGGGCCTTTTGTGCAGGAATGGAT 359
|||||||||||||| |||| ||||| || ||| |||| |||||||||||||| ||||||
Sbjct 268 AGAGTCAAATGTGTTATCGTTGAAGGCAGTACACCTCGAGCCTTTTGTGCAGGGATGGAT 327
Query 360 ATTAAAGGAGTTGTTGCAGAGATCCTA-ATGGACAAAAATACGTCTCTTGTGCAAAAGGT 418
||||||||||||| |||||| |||| | | ||||||||| || ||||||||||||||||
Sbjct 328 ATTAAAGGAGTTGCTGCAGAAATCC-AGAAGGACAAAAACACACCTCTTGTGCAAAAGGT 386
Query 419 ATTTACAGCTGAGTATAGC-CTGATATGC-AAGATTGCTGGATACAGAAAA-CCATATAT 475
|||||||| || |||| | ||||||||| | |||||||| |||| |||| ||||||||
Sbjct 387 GTTTACAGCAGAATATA-CTCTGATATGCGCA-ATTGCTGGCTACA-AAAAGCCATATAT 443
Query 476 CTCTTTAATGGATGGCATAACAATGGGATTTGGTCTTGGTCTTTCTGGACATGGACGCTA 535
||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 444 CTCATTAATGGATGGTATAACAATGGGATTTGGTCTAGGTCTTTCTGGACATGGTCGCTA 503
Query 536 CCGAGTGATAACAGAGAGGACGGTCCTCGCAATGCCAGAAAATGGAATCGGCTTGTTTCC 595
||| |||||||| ||||||||||| || || ||||||||||||||||||||||| || ||
Sbjct 504 CCGTGTGATAACTGAGAGGACGGTTCTTGCCATGCCAGAAAATGGAATCGGCTTATTCCC 563
Query 596 AGATGTTGGATTTTCATATATTGCAGCTCATAGCCCTGGCGAAGGATCTGTTGGTGCTTA 655
|||||| || ||||||||||| ||||||||||||||||| | ||||||||||||||||||
Sbjct 564 AGATGTCGGCTTTTCATATATAGCAGCTCATAGCCCTGGAGGAGGATCTGTTGGTGCTTA 623
Query 656 CCTAGGTATGACTGGGAGAAGGATTTCCACACCTTCAGATGCACTGTTTGTGGGTCTTGG 715
|| ||| ||||||| | |||||| |||||||| ||||||||| |||| || ||||||||
Sbjct 624 TCTTGGTTTGACTGGAAAAAGGATCTCCACACCATCAGATGCATTGTTCGTTGGTCTTGG 683
Query 716 GACACATTATGTACCATCTGGAAAGCTAGGTTCACTCAGA-GAAGCCATTTTGTCAGCTG 774
|||||||||||||||||||| |||||||| |||| | | | ||||||||||||||||||
Sbjct 684 GACACATTATGTACCATCTGAAAAGCTAGCTTCA-TTAAAGGAAGCCATTTTGTCAGCTA 742
Query 775 ACCTTTCCAAGGATCCCCAA-CAACACATCCAAGCAACTTTATCAAATTACAGCAGTGAT 833
||||||| ||||| || || ||| |||| ||||||||||||||||| |||||| | ||
Sbjct 743 ACCTTTCTGAGGAT-CCTAATCAAGACATACAAGCAACTTTATCAAAATACAGCGGCAAT 801
Query 834 CCTGAAACTGAGT-CCCACCTCCAAAT-GCTTTTGCCTCAGATAGAATCAGCTTTTAGTG 891
|||||| |||| | |||| || ||||| |||||||||||| ||||| ||||| |||||
Sbjct 802 CCTGAATCTGA-TGCCCATCT-CAAATCGCTTTTGCCTCAAATAGAGTCAGCCTTTAG-C 858
Query 892 T-AAGTAAGTCTGTTAAGGAAACAATAGAAGAGCTGAAAAAGTTCCAGCAGA-GCAGTGA 949
| || |||||||||||||||||||||||||||||| ||||||| ||||| || ||| |||
Sbjct 859 TCAAATAAGTCTGTTAAGGAAACAATAGAAGAGCTCAAAAAGTACCAGC-GAAGCACTGA 917
Query 950 GGCTTCAGTTGCAGAATGGGCTAATGAAGCAGTCCAAGGCATTG-AAAAAGGGGCACCTT 1008
| ||||||||| |||||||||||||| ||| || |||| ||| ||||||| ||||| |
Sbjct 918 GCCTTCAGTTGTGGAATGGGCTAATGAGGCACTCAAAGGT-TTGGAAAAAGGAGCACCGT 976
Query 1009 TTTCTCTTTACCTAACACACAAGTACTTCTCCAAAGTTGCTTGTGCCAAGGGTAAAACC- 1067
| |||||||| |||||||| |||||||||||||| ||||| | ||| ||||||||||||
Sbjct 977 TCTCTCTTTATCTAACACAAAAGTACTTCTCCAATGTTGCATCTGCTAAGGGTAAAACCG 1036
Query 1068 AACAACGCCATG-GCAACACTTAACGGTGTGATGATAACTGAGTACCGCATTGCTCTAAG 1126
|| |||| || ||||||||||| || ||||||| |||||| |||||||| || |||||
Sbjct 1037 AA-AACGA-ATTAGCAACACTTAATGGCGTGATGAAAACTGAATACCGCATCGCACTAAG 1094
Query 1127 ATCTGCATTGCGCAGTGATTTCACTGAAGGTGTTAGAGCAGTCTTGACTGACAAGGACCA 1186
||| || ||||| ||||||| ||||||| ||||||||||| |||| ||||||||| ||
Sbjct 1095 ATCAGCCTTGCGTGGTGATTTTGCTGAAGGCGTTAGAGCAGTTTTGATTGACAAGGATCA 1154
Query 1187 GAATCCGAAATGGAAACCAGCGAGC-TTAGACGAAGTAGATG-AAACCGAAGTGGACGCG 1244
||| || |||||||| || || ||| || || || ||||| | |||| ||||| || ||
Sbjct 1155 GAACCCAAAATGGAACCCGGCAAGCATT-GAAGAGGTAGACGGAAAC-GAAGTAGAAGCT 1212
Query 1245 CTCTTTATGCCATTAAGTCCTGAATTTGAAGAGCTAAACGTATGA 1289
|| |||| |||||||||| ||| | |||||| |||| || |||
Sbjct 1213 CTGTTTAAACCATTAAGTCAGGAAGTGGAAGAGTTAAAAGTCTGA 1257
> Ahg900061 jgi|Araly1|900061|Al_scaffold_0004_711
Length=729
Score = 420 bits (227), Expect = 2e-116
Identities = 273/293 (93%), Gaps = 12/293 (4%)
Strand=Plus/Plus
Query 415 AGGTATTTACAGCTGAGTATAGCCTGATATGCAAGATTGCTGGATAC-AGAAAACCATAT 473
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 146 AGGTATTTACAGCTGAGTATAGCCTGATATGCAAGATTGCTGGATACAAAAAAACCATAT 205
Query 474 ATCTCTTTAATGGATGGCATAACAATGGGATTTGGTCTTGGTCTTTCTGGACAT-GGACG 532
||||||||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 206 GTCTCTTTAATGGATGGCATAACAATGGGA-------TTGGTCTTTCTGGACATAGG-CG 257
Query 533 CTACCGAGTGATAACAGAGAGGACGGTCCTCGCAATGCCAGAAAATGGAATCGGCTTGTT 592
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 258 CTACCGAGTGATAACAGAGAGGATGGTCCTCGCAATGCCAGAAAATGGAATCGGGTTGTT 317
Query 593 TCCAGATGTTGGATTTTCATATATTGCAGCTCATAGCCCTGGCGA-AGGATCTGTTGGTG 651
|||||||||||| ||||||||||| |||||||||||||||||| | ||||| ||||||||
Sbjct 318 TCCAGATGTTGGGTTTTCATATATAGCAGCTCATAGCCCTGGC-AGAGGATATGTTGGTG 376
Query 652 CTTACCTAGGTATGACTGGGAGAAGGATTTCCACACCTTCAGATGCACTGTTT 704
||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 CTTACCTTGGTATGACTGGGAGAAGGATTTCCACACCTTCAGATGCACTGTTT 429
Score = 350 bits (189), Expect = 2e-95
Identities = 265/302 (88%), Gaps = 3/302 (1%)
Strand=Plus/Plus
Query 873 ATAGAATCAGCTTTTAGTGTAAGTAAGTCTGTT-AAGGAAACAATAGAAGAGCTGAAAAA 931
||| |||||||||||| || ||||||||||||| || |||||||| ||||||||||| ||
Sbjct 430 ATAAAATCAGCTTTTACTGCAAGTAAGTCTGTTCAA-GAAACAATCGAAGAGCTGAAGAA 488
Query 932 GTTCCAGCAGAGCAGTGAGGCTTCAGTTGCAGAATGGGCTAATGAAGCAGTCCAAGGCAT 991
|| ||||| ||||| ||| | |||||||||||||||||||||||||||| || ||||| |
Sbjct 489 GTACCAGCTGAGCACTGAAGATTCAGTTGCAGAATGGGCTAATGAAGCACTCAAAGGCCT 548
Query 992 TGAAAAAGGGGCACCTTTTTCTCTTTACCTAACACACAAGTACTTCTCCAAAGTTGCTTG 1051
|| |||||| ||||| |||||||| | ||||| || || |||||||||||||||| |||
Sbjct 549 TGTAAAAGGAGCACCATTTTCTCTGCATCTAACGCATAACTACTTCTCCAAAGTTGTTTG 608
Query 1052 TGCCAAGGGTAAAACCAACAACGCCATGGCAACACTTAACGGTGTGATGATAACTGAGTA 1111
|||||||||||||||| |||||| ||||||| ||||| |||||||||| |||||||||
Sbjct 609 TGCCAAGGGTAAAACCGACAACGGGATGGCAATGCTTAATGGTGTGATGAAAACTGAGTA 668
Query 1112 CCGCATTGCTCTAAGATCTGCATTGCGCAGTGATTTCACTGAAGGTGTTAGAGCAGTCTT 1171
||| ||||||||||||| ||| |||||| ||||||||||||||||||||||||||| |||
Sbjct 669 CCGTATTGCTCTAAGATATGCTTTGCGCGGTGATTTCACTGAAGGTGTTAGAGCAG-CTT 727
Query 1172 GA 1173
||
Sbjct 728 GA 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52069364915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5