BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24420.1
Length=1124
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930532 jgi|Araly1|930532|scaffold_302989.1 1367 0.0
> Ahg930532 jgi|Araly1|930532|scaffold_302989.1
Length=864
Score = 1367 bits (740), Expect = 0.0
Identities = 815/852 (96%), Gaps = 2/852 (0%)
Strand=Plus/Plus
Query 13 AAAACTCTTGTACTTAAGCATGGTGGTTAATCAGAAGATATCCGGCCTTGCATCCGCTAT 72
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 AAAACTCTTCTACTTAAGCATGGTGGTTAATCAGAAGATATCCGGCCTTGCATCCGCTAT 63
Query 73 GAACGCCAAAATCATCGGTTCAGGAGAGAGATCGATGGTCTTGGCACACGGTTTCGGAGG 132
|||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||
Sbjct 64 GAACGCCAAAATCATCGGTTCAGGCGAGAGATCAATGGTCCTGGCACACGGTTTCGGAGG 123
Query 133 CGACCAGTCGGTTTGGGATAAAATAATACCGGTCTTGTCCCAATCCTTCAAAGTTTTGGT 192
||| |||||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 124 CGATCAGTCGGTTTGGGACAAGATAATACCGGTCTTGTCTCAATCCTTCAAAGTTTTGGT 183
Query 193 CTTTGACTGGCTTTTCTCTGGAGCCATTAAAGATCAAACTCTCTATGACCCTTCAAAGTA 252
||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 184 CTTTGACTGGCTTTTCTCTGGAGCCATTAAAGACCAAACTCTTTATGACCCTTCGAAGTA 243
Query 253 TAACTCCTTAGACGTCTTCTCTGACGATCTCATTGCTCTTATGGAGGAGTTGAAGTTTGG 312
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 TAACTCCTTAGTCGCCTTCTCTGACGATCTCATTGCTCTTATGGAGGAGTTGAAGTTTGG 303
Query 313 CCCTGTCGTGTTCGTAGGCCATTCCATGTCGGGGGTGATCGGTTGTGCTGCTTCTATTAA 372
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 304 CCCTGTAGTGTTCGTAGGCCATTCCATGTCGGGGATGATCGGTTGTGCTGCTTCTATTAA 363
Query 373 AAGGCCCGACTTGTTTACAAATCTTCTCCTTATTGCTGCTTCTCCAAGGTATATAAACAG 432
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 364 AAGGCCCGACTTGTTTACAAATCTTCTCCTTATTGCTGCTTCGCCCAGGTATATAAACAG 423
Query 433 TGAGGATTACAAAGGAGGGTTTGAGTCAAAAGACATTGACACGATCAT-TACCAGCATTG 491
|||||||||||| ||||||||||||||||||||||| ||||||||||| | ||| |||||
Sbjct 424 TGAGGATTACAAGGGAGGGTTTGAGTCAAAAGACATCGACACGATCATCT-CCAACATTG 482
Query 492 GCTCCAACTACGAAGCTTGGGCGGTTGATTTCTCCTCATTCGTGGTCGACTCGAGAGACT 551
||||||||||||| |||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 483 GCTCCAACTACGAGGCTTGGGCGGTTGAATTCTCCTCCGTCGTGGTCGACCCGAGAGACT 542
Query 552 CTCTCTCGGTCCAAAGGTTCGAGAAGTCCCTTAAGAAGATGAAGCCCGAGACAGCTCTTG 611
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 543 CTCTCTCGGTCCAAAGGTTCGAGAAGTCCCTTAAGAAGATGAAGCCCGAGACGGCTCTTG 602
Query 612 CCTTAGCTAAGATAGTGTTTGGTAGCGACGAGAGAGAGATTTTGGGACAAGTGTCAGTGC 671
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 603 CCTTAGCTAAGATAGTGTTTGGTAGCGACGAGAGAGAGCTTTTGGGACAAGTGTCAGTGC 662
Query 672 CTTGCCATGTCATACAACCAGGAAACGACGTCGTAGTGCCTGTCTCCGTCGCATACTTCA 731
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 663 CTTGCCATATCATACAACCAGGAAACGACGTCGTAGTGCCTGTCTCCGTCGCTTACTTCA 722
Query 732 TGCAGGAGAAGATTAAGGGGAAATCGACAGTGGAGATCATCGAGGACGCGATCGGGCATT 791
|||||||||||||||| ||||||||||| |||||||||||||| ||||||| ||||||||
Sbjct 723 TGCAGGAGAAGATTAAAGGGAAATCGACGGTGGAGATCATCGACGACGCGACCGGGCATT 782
Query 792 TTCCACAGATGACATCACATTTGGAGCTGCTTGGCGTCATGAGGCGCCTCCTTGAGTTTT 851
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 783 TTCCACAGATGACATCACATTTGGAGCTGCTTGGCGTCATGAGACGCCTCCTCGAGTTTT 842
Query 852 AAGGCTTATATA 863
||||||||||||
Sbjct 843 AAGGCTTATATA 854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41897085783
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5