BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24440.1
Length=1989
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479953 jgi|Araly1|479953|fgenesh2_kg.3__2654__AT3G24440.1 2800 0.0
> Ahg479953 jgi|Araly1|479953|fgenesh2_kg.3__2654__AT3G24440.1
Length=1959
Score = 2800 bits (1516), Expect = 0.0
Identities = 1840/1991 (92%), Gaps = 43/1991 (2%)
Strand=Plus/Plus
Query 1 ATGGATTCATCATCGACGAAATCGAAGATCTCACATTCACGCAAGACGAACAAAAAGTCA 60
|||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 1 ATGGATTCATCATCGACGAAATCGAAGATCTCTCAATCACGCAAGACGAACAACAAGTCA 60
Query 61 AACAAGAAGCACGAATCAAATGGGAaacaacaa-c-aacaacaaGACGTC--GATGGTGG 116
||||||||||| || |||||||||||||||||| | ||||| || || | || | |
Sbjct 61 AACAAGAAGCATGATTCAAATGGGAAACAACAATCTAACAAGAA-ACAACAAGAAGACGA 119
Query 117 TGGTGG-GTGTTTGAGATCATCATGGATCTGCAAGAATGCATCGTGTAGAGCTAATGTGC 175
|||||| | |||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 120 TGGTGGAG-GTTTGAGATCATCATGGATCTGCAAGAATGCATCTTGTAGAGCTAATGTAC 178
Query 176 CTAAAGAAGATTCCTTTTGCAAGAGATGTTCTTGTTGTGTTTGTCATAATTTCGATGAAA 235
||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 179 CTAAAGATGATTCCTTTTGCAAGAGATGTTCTTGTTGTGTTTGCCATGGTTTCGATGAAA 238
Query 236 ACAAGGATCCTAGTCTTTGGTTAGTTTGTGAGCCTGAGAAATCTGATGATGTTGAGTTCT 295
|||| || ||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 239 ACAAAGACCCTAGTCTTTGGTTAGTTTGTGAACCTGAGAAATCAGATGATGTTGAGTTCT 298
Query 296 GTGGCTTATCGTGTCACATTGAGTGTGCTTTTCGAGAAGTCAAAGTTGGTGTTATTGCTC 355
|||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||| ||
Sbjct 299 GTGGCTTATCGTGTCACATTGAGTGTGCGTTTCGTGAAAACAAAGTTGGTGTTATTGGTC 358
Query 356 TTGGGAATCTGATGAAGCTTGATGGTTGTTTTTGTTGCTACTCATGTGGCAAAGTTTCTC 415
||||| |||||| |||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 359 TTGGGGATCTGAAGAAGCTTGATGGTTGTTTTTGTTGTTACTCTTGTGGCAAAGTTTCTC 418
Query 416 AAATTCTTGGATGTTGGAAAAAGCAGCTTGTGGCAGCAAAGGAAGCACGACGACGTGATG 475
||||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||||
Sbjct 419 AAATTCTTGGATGTTGGAAGAAGCAGCTTGTGGCAGCGAAGGAAGCACGACGGCGCGATG 478
Query 476 GACTGTGTTATAGAATAGATTTGGGTTATAGACTGTTGAATGGGACTAGTCGGTTTAGTG 535
|||||||||| ||||||||| ||||||||||| | ||||||||||||||||||||||
Sbjct 479 TTTTGTGTTATAGGATAGATTTGAGTTATAGACTGCTCAATGGGACTAGTCGGTTTAGTG 538
Query 536 AATTGCATGAGATTGTTAGAGCTGCTAAGTCTATGCTGGAGGATGAAGTTGGACCTCTTG 595
||||||||||||||||||||||||||||||||| ||| || ||||||||||| |||||||
Sbjct 539 AATTGCATGAGATTGTTAGAGCTGCTAAGTCTAAGCTAGAAGATGAAGTTGGGCCTCTTG 598
Query 596 ATGGACCTACTGCTAGAACTGATAGAGGCATTGTTAGTAGGCTTCCTGTTGCAGCTAATG 655
||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||
Sbjct 599 ATGGACCTACTGCTAGAACTGATAGGGGCATTGTTAGTCGGCTTCCTGTTGCAGCTGATG 658
Query 656 TGCAAGAGCTTTGCACTTCTGCAATTAAA-AAGGCAGGGGA-GTTGTCAGCCAATGCAGG 713
|||||||||||||||||||||||| |||| ||||||| ||| ||| |||||||||||||
Sbjct 659 TGCAAGAGCTTTGCACTTCTGCAA-TAAAGAAGGCAGAGGAGGTT-TCAGCCAATGCAGC 716
Query 714 TAGAGATTTAGTTCCAGCTGCGTGCAGGTTTCATTTCGAAGATATTGCACCAAAGCAAGT 773
|||||||||||||| |||||||| ||||||||||| || |||||||||||||| |||||
Sbjct 717 CAGAGATTTAGTTCCTGCTGCGTGTAGGTTTCATTTTGAGGATATTGCACCAAAACAAGT 776
Query 774 GACTCTTCGTCTGATTGAGCTACCTAGTGCTGTAGAATATGATGTTAAGGGTTACAAGTT 833
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 777 GACTCTTCGTCTGATTGAGCTACCTAGTGCTGTAGAGTATGATGTTAAGGGTTACAAGTT 836
Query 834 ATGGTATTTCAAGAAAGGAGAGATGCCTGAGGATGATTTATTTGTTGATTGCAGTAGAAC 893
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 837 ATGGTGTTTCAAGAAAGGAGAGACGCCTGAGGATGATTTATTTGTTGATTGCAGTAGAAC 896
Query 894 TGAGAGGAGGATGGTGATATCTGACCTTGAGCCTTGCACGGAGTACACATTCCGTGTTGT 953
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 897 TGAGAGGAGGATGGTGATATCTGACCTTGAGCCGTGCACGGAGTACACATTCCGTGTTGT 956
Query 954 CTCTTACACAGAAGCTGGTATATTTGGCCATTCGAACGCTATGTGCTTTACGAAGAGCGT 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 CTCTTACACAGAAGCTGGTATATTTGGCCATTCGAACGCTATGTGCTTTACGAAGAGCGT 1016
Query 1014 TGAGATATTGAAACCAGTGGATGGTAAGGAAAAGAGAACAATTGATTTAGTAGGTAACGC 1073
||||||||||||||||||||||||||| |||||||||| || ||||||||||||||| |
Sbjct 1017 TGAGATATTGAAACCAGTGGATGGTAAAGAAAAGAGAATAACTGATTTAGTAGGTAATGG 1076
Query 1074 TCAGCCCTCAGATAGAGAGGAGAAAAGTAGCATTTCCTCAAGATTTCAAATTGGGCAACT 1133
|||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1077 TCAGCCTTCAGATAGAGAGGAGAAAAGTAGCATTTCTTCAAGATTTCAAATCGGGCAACT 1136
Query 1134 TGGGAAGTATGTGCAGTTGGCTGAAGCTCAGGAGGAAGGCTTGCTTGAAGCGTTTTACAA 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TGGGAAGTATGTGCAGTTGGCTGAAGCTCAGGAGGAAGGCTTGCTTGAAGCGTTTTACAA 1196
Query 1194 TGTAGATACTGAGAAAATTTGTGAGCCGCCAGAGGAAGAATTGCCACCTCGAAGGCCACA 1253
||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||| ||
Sbjct 1197 TGTAGATACTGAGAAAAGTTGTGAGCCGCCAGAGGAAGAATTGCCATCTCGACGGCCGCA 1256
Query 1254 TGGGTTTGATCTAAATGTAGTTTCAGTGCCAGACTTGAATGAGGAGTTCACTCC---ACC 1310
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1257 TGGGTTTGATCTAAATGTAGTTTCGGTGCCAGACTTGAATGAGGAGTTCACTCCTCTACC 1316
Query 1311 TGATTCTTCTGGAGGTGAAGACAATGGAGTGCCGCTAAATTCGCTTGCTGAGGCTGATGG 1370
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1317 TGATTCTTCTGGAGGTGAAGACAATGGAGTGCCGTTAAATTCGCTTGCTGAGGCTGATGG 1376
Query 1371 TGGTGATCATGATGATAACTGTGATGATGCTGTGTCTAACGGTAGACGGAAGAACAACAA 1430
|| ||| |||||| | | || |||||||| ||||||||||||||| | ||||||||||||
Sbjct 1377 TGATGAGCATGAT-A-A-CTATGATGATGATGTGTCTAACGGTAGTCTGAAGAACAACAA 1433
Query 1431 CGACTGCTTGGTTATATCAGATGGAAGTGGTGATGATACCGGATTTGATTTCCTCATGAC 1490
|||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||
Sbjct 1434 TGACTGCTTGGTTATATCAGATGGAAGCGGTGATGATACTGAATTTGATTTCCTCATGAC 1493
Query 1491 CAGGAAGAGGAAAGCAATTTCAGACAGTAATGACTCAGAGAACCACGAGTGTGACAGTTC 1550
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 1494 CAGGAAGAGGAAAGCAATTTCAAACAGTAATGACTCAGAGAACCATGAGTGTGACAGTTC 1553
Query 1551 GTCGATTGATGACACTCTTGAGAAATGTGTGAAGGTGATCAGGTGGCTGGAGCGTGAAGG 1610
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1554 GCCGATTGATGACACTCTTGAGAAATGTGTGAAGGTAATCAGGTGGCTGGAGCGTGAAGG 1613
Query 1611 CCACATTAA-AACAACATTCAGGGTCAGGTTCTTGACATGGTTCAGCATGAGCTCAACCG 1669
||||||| | || ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1614 CCACATTGACAA-AACATTCAGGGTCAGGTTCTTGACATGGTTCAGCATGAGGTCAACCG 1672
Query 1670 CTCAGGAGCAATCTGTTGTGAGCACATTTGTGCAGACTTTAGAGGATGATCCAGGTAGCC 1729
||||||||||||| ||||||||||||||||| |||||| |||||||||||||| ||||||
Sbjct 1673 CTCAGGAGCAATCCGTTGTGAGCACATTTGTTCAGACTCTAGAGGATGATCCAAGTAGCC 1732
Query 1730 TTGCTGGCCAACTTGTCGACGCATTTACTGATGTTGTCTCCACCAAAAGGCCAAACAATG 1789
|||||||||| ||| |||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1733 TTGCTGGCCAGCTTCTCGATGCATTCGCTGATGTTGTCTCCACCAAAAGGCCAAACAATG 1792
Query 1790 GAGTAATGACCTCACATTGATCAAGCTTCCCATTGATTCAACCACATTCTTTCTTAGTAT 1849
||||||| | || || || || | | | | | |||||||||||||
Sbjct 1793 GAGTAAT-AG-TCTCA-----CA--CT----A---A---A-C-A--TTCTTTCTTAGTAC 1829
Query 1850 GAATAATATGATTAGAACTAAATAGTCCATGATTTCTCTAACGTGGATTCGGCTATTTAT 1909
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1830 GAATAATATGATTAGAACAAAATAGTCCATGATTTCTCTAACGTGGATTCGGATATTTAT 1889
Query 1910 CATCAATTTGGACCACAGGATTGACCACATTGCAAATCTCTTTGGATTGGGGTTTAGATT 1969
|||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||
Sbjct 1890 AATCAATTTGGACCACAGGATTGACCACATTGCAA-TCTATTTGGATTGGGTTTTAGATT 1948
Query 1970 TAGGATTTGAC 1980
|||||||||||
Sbjct 1949 TAGGATTTGAC 1959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74771150935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5