BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G24450.1 Length=755 Score E Sequences producing significant alignments: (Bits) Value Ahg479954 jgi|Araly1|479954|fgenesh2_kg.3__2655__AT3G24450.1 917 0.0 > Ahg479954 jgi|Araly1|479954|fgenesh2_kg.3__2655__AT3G24450.1 Length=709 Score = 917 bits (496), Expect = 0.0 Identities = 604/651 (93%), Gaps = 27/651 (4%) Strand=Plus/Plus Query 1 ATTTCTCTTACATATTCTCTCATTTCTCACCCAACTTCTCCTTTTTATTAGTCTTCCCAA 60 |||||||| |||||||||||| ||||||||||||||||||||||||||||| | Sbjct 1 ATTTCTCTCACATATTCTCTCCTTTCTCACCCAACTTCTCCTTTTTATTAG---T----- 52 Query 61 CATCATCCCAATATCACACTCTCTTAAAACCCTTAATTA-GTTTTCAAACCAATGGGAAA 119 | | |||||| |||||||||||| |||||||||||||| ||||||||| |||||| || Sbjct 53 C-T--TCCCAAGATCACACTCTCTAAAAACCCTTAATTACTTTTTCAAACTAATGGGGAA 109 Query 120 GCTCCAGAAGATTGGGAGAGTATGGGATTGTCTTTTTCTTCCGACAAATCAGTGTTCATG 179 ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 110 GCTCCAGAAAATTGGGAGAGTATGGGATTGTTTTTTTCTTCCGACAAATCAGTGTTCATG 169 Query 180 TTTTTGTCTAAACACTCTA-G-GA-GATGAAGAAGAAGAGTTTGAGAAAG-AGCCATTGA 235 ||||||||||||||||||| | || ||||||||||||| ||||||| ||| ||||||||| Sbjct 170 TTTTTGTCTAAACACTCTAGGAGATGATGAAGAAGAAGTGTTTGAG-AAGAAGCCATTGA 228 Query 236 TAGATTCTTCAACAGAGAAATCTGGGAAAGTCATGAGGTTAAAAGATGTTGTAGCTGCTG 295 ||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 229 TAGATTCTTCAGCAGAGAAATCTGGGAAGGTCATGAGATTAAAAGATGTTGTAGCTGCTG 288 Query 296 ATCATCGTCAGACTCTTGCCTTTCATCTTAAGCCTAAGATAGTGGAGCTAAAGGTGTCAA 355 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 289 ATCATCGCCAGACTCTTGCCTTTCATCTTAAGCCTAAGATAGTGGAGCTAAAGGTGTCAA 348 Query 356 TGCATTGCTACGGATGTGCGAAGAAAGTCGAGAAGCATATTTCTAAATTAGACGGAGTGA 415 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 349 TGCATTGCTACGGATGTGCGAAGAAAGTCGAGAAGCATATTTCTAAATTAGACGGAGTGA 408 Query 416 CATGGTACAAAGTGGAGCTAGAGAGCAAGAAGGTGGTGGTGAAAGGGAACATATTGCCGG 475 ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| | Sbjct 409 CATGGTACAAAGTGGAGCTAGAGAGCAAGAAGGTGGTGGTGAAGGGGAACATAATGCCAG 468 Query 476 TAGATGTGTTAGAGAGTATTTGTAAAGTCAAGAATGCTCAGCTTTGGTCTTCT-C--CTT 532 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 469 TAGATGTGTTAGAGAGTATTTGTAAAGTCAAGAATGCTCAGCTTTGGTCTTCTTCTTCTT 528 Query 533 GAATCACTCTTTTCTTTCCACATGGGCCTTTCATGTCAATCTCCATCTTTCATGT---T- 588 |||||||||||| ||||||||||||||||||||||||||||| |||||| ||||| | Sbjct 529 GAATCACTCTTT-CTTTCCACATGGGCCTTTCATGTCAATCTACATCTT-CATGTCAATC 586 Query 589 A-TATTATTGTCATTATCTAATTTTGCGTACATACACATGCATGCATCTAT 638 | ||||||| ||||||||||||| ||||||||||||||||||||||||||| Sbjct 587 AATATTATTATCATTATCTAATTATGCGTACATACACATGCATGCATCTAT 637 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27829729410 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5