BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24450.1
Length=755
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479954 jgi|Araly1|479954|fgenesh2_kg.3__2655__AT3G24450.1 917 0.0
> Ahg479954 jgi|Araly1|479954|fgenesh2_kg.3__2655__AT3G24450.1
Length=709
Score = 917 bits (496), Expect = 0.0
Identities = 604/651 (93%), Gaps = 27/651 (4%)
Strand=Plus/Plus
Query 1 ATTTCTCTTACATATTCTCTCATTTCTCACCCAACTTCTCCTTTTTATTAGTCTTCCCAA 60
|||||||| |||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1 ATTTCTCTCACATATTCTCTCCTTTCTCACCCAACTTCTCCTTTTTATTAG---T----- 52
Query 61 CATCATCCCAATATCACACTCTCTTAAAACCCTTAATTA-GTTTTCAAACCAATGGGAAA 119
| | |||||| |||||||||||| |||||||||||||| ||||||||| |||||| ||
Sbjct 53 C-T--TCCCAAGATCACACTCTCTAAAAACCCTTAATTACTTTTTCAAACTAATGGGGAA 109
Query 120 GCTCCAGAAGATTGGGAGAGTATGGGATTGTCTTTTTCTTCCGACAAATCAGTGTTCATG 179
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 110 GCTCCAGAAAATTGGGAGAGTATGGGATTGTTTTTTTCTTCCGACAAATCAGTGTTCATG 169
Query 180 TTTTTGTCTAAACACTCTA-G-GA-GATGAAGAAGAAGAGTTTGAGAAAG-AGCCATTGA 235
||||||||||||||||||| | || ||||||||||||| ||||||| ||| |||||||||
Sbjct 170 TTTTTGTCTAAACACTCTAGGAGATGATGAAGAAGAAGTGTTTGAG-AAGAAGCCATTGA 228
Query 236 TAGATTCTTCAACAGAGAAATCTGGGAAAGTCATGAGGTTAAAAGATGTTGTAGCTGCTG 295
||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 229 TAGATTCTTCAGCAGAGAAATCTGGGAAGGTCATGAGATTAAAAGATGTTGTAGCTGCTG 288
Query 296 ATCATCGTCAGACTCTTGCCTTTCATCTTAAGCCTAAGATAGTGGAGCTAAAGGTGTCAA 355
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 ATCATCGCCAGACTCTTGCCTTTCATCTTAAGCCTAAGATAGTGGAGCTAAAGGTGTCAA 348
Query 356 TGCATTGCTACGGATGTGCGAAGAAAGTCGAGAAGCATATTTCTAAATTAGACGGAGTGA 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 TGCATTGCTACGGATGTGCGAAGAAAGTCGAGAAGCATATTTCTAAATTAGACGGAGTGA 408
Query 416 CATGGTACAAAGTGGAGCTAGAGAGCAAGAAGGTGGTGGTGAAAGGGAACATATTGCCGG 475
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
Sbjct 409 CATGGTACAAAGTGGAGCTAGAGAGCAAGAAGGTGGTGGTGAAGGGGAACATAATGCCAG 468
Query 476 TAGATGTGTTAGAGAGTATTTGTAAAGTCAAGAATGCTCAGCTTTGGTCTTCT-C--CTT 532
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 469 TAGATGTGTTAGAGAGTATTTGTAAAGTCAAGAATGCTCAGCTTTGGTCTTCTTCTTCTT 528
Query 533 GAATCACTCTTTTCTTTCCACATGGGCCTTTCATGTCAATCTCCATCTTTCATGT---T- 588
|||||||||||| ||||||||||||||||||||||||||||| |||||| ||||| |
Sbjct 529 GAATCACTCTTT-CTTTCCACATGGGCCTTTCATGTCAATCTACATCTT-CATGTCAATC 586
Query 589 A-TATTATTGTCATTATCTAATTTTGCGTACATACACATGCATGCATCTAT 638
| ||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 587 AATATTATTATCATTATCTAATTATGCGTACATACACATGCATGCATCTAT 637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27829729410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5