BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24460.1
Length=1976
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479955 jgi|Araly1|479955|fgenesh2_kg.3__2656__AT3G24460.1 2383 0.0
Ahg497050 jgi|Araly1|497050|fgenesh2_kg.9__15__AT4G13345.1 1055 0.0
> Ahg479955 jgi|Araly1|479955|fgenesh2_kg.3__2656__AT3G24460.1
Length=1584
Score = 2383 bits (1290), Expect = 0.0
Identities = 1440/1514 (95%), Gaps = 4/1514 (0%)
Strand=Plus/Plus
Query 281 TTCTTTCATCTAAGAAACTGATTTCTGATGCAAAATCCTCCCATGGAATGAGTGATCTGT 340
||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 TTCTTCCATATAAGAAACTGATTTCTGATGCAAAATTCTCCCATGGAATGAGTGATCTGT 60
Query 341 TTCTTGAATTTCTTGATCTTCTAATGACATGAAGAGGAGAGAGTCTTGGTAACTTTAAGG 400
||||||||||||||||||||||||||| ||||||||||||| ||| |||||| |||||||
Sbjct 61 TTCTTGAATTTCTTGATCTTCTAATGATATGAAGAGGAGAGCGTC-TGGTAAGTTTAAGG 119
Query 401 AGTAATGGAGACCGGTACAAGCGTTAGCAACAACAACCAAAGCATCAGAAACGATAGCTA 460
| ||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||
Sbjct 120 ACTAATGGAGACCGGTACAAGTGTTAGCAACAACAGCGGAAGCATCAGAAACGATAGCTA 179
Query 461 TGAAGCAATCAAGAATGGATCATGGTTTAATCAGTTCCGCAACGGCTGCAATCCCTGGAT 520
|||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 180 TGAAGCAATCAAGAATGGATCATGGTTTAATCAGTTCCGCAATGGTTGCAATCCATGGAT 239
Query 521 GGCTAGATATGTATACGGTCTGATATTCCTCATTGCGAATCTACTAGCTTGGGCTGCTCG 580
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 240 GGCTAGATATGTATACGGTCTGATATTTCTCATTGCGAATCTACTAGCTTGGGCTGCTCG 299
Query 581 TGATTATGGTCGGGGTGCCTTAAGAAAAGTGACAAGATTCAAGAACTGTAAAGGTGGCGA 640
|||||||||||||||||||||||||||||| |||| |||||||||||||||||| || ||
Sbjct 300 TGATTATGGTCGGGGTGCCTTAAGAAAAGTAACAAAATTCAAGAACTGTAAAGGCGGGGA 359
Query 641 AAACTGTTTGGGGACCGACGGTGTCTTAAGAGTTAGCTTGGGATGTTTTTTGTTCTACTT 700
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AAACTGTTTGGGGACCGAAGGTGTCTTAAGAGTTAGCTTGGGATGTTTTTTGTTCTACTT 419
Query 701 TGTTATGTTTCTTTCAACACTTGGTACGTCGAAAACGCATTCATCAAGAGATAGATGGCA 760
|||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 420 TGTTATGTTTCTTTCAACACTTGGCACATCGAAAACACATTCATCAAGAGATAGATGGCA 479
Query 761 TTCTGGATGGTGGTTTGTTAAGCTCATCATGTGGCCTGCCTTAACCATCATTCCCTTCTT 820
||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||
Sbjct 480 TTCTGGATGGTGGTTTGCTAAGCTCATCATGTGGCCTGCCTTAACCATTATCCCCTTCTT 539
Query 821 GCTTCCTTCTTCCATTATTCACCTTTACGGAGAGATTGCCCATTTTGGTGCAGGGGTATT 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GCTTCCTTCTTCCATTATTCACCTTTACGGAGAGATTGCCCATTTTGGTGCAGGGGTATT 599
Query 881 TC-TCTTAATACAGCTAATTAGTGTGATCAGTTTCATTCAATGGCTCAACGAATGCTATC 939
|| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 600 TCTTC-TAATACAGCTAATTAGTGTGATCAGTTTCATTCAATGGCTTAACGAATGCTATC 658
Query 940 AGTCCCAAAAAGATGCAGAAAGATGCCGTGTCTATGTGATGTTACTATCAACTACTTCAT 999
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 659 AGTCCCAAAAAGATGCAGAAAGATGCCGTGTCTATGTGATGTTACTAGCAACTACTTCAT 718
Query 1000 ACACAGTTTGCATAGTAGGAGTGATTTTGATGTACATTTGGTACGCGCCTGATTCTTCAT 1059
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 719 ACACAGTTTGCATAATAGGAGTGATTTTGATGTACATTTGGTACGCGCCGGATTCGTCAT 778
Query 1060 GTCTTCTCAATATATTCTTTATAACATGGACTTTGTTCCTCATCCAACTCATGACAAGCA 1119
| ||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct 779 GCCTTCTCAATATATTCTTCATAACATGGACTTTGTTCCTTATCCAACTTATGACAAGCA 838
Query 1120 TCGCTCTCCATCCTAAAGTTAATGCTGGATACTTGACTCCAGCTCTTATGGGACTCTATG 1179
| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TAGCTCTCCATCCTAAGGTGAATGCTGGATACTTGACTCCAGCTCTTATGGGACTCTATG 898
Query 1180 TTGTGTTTATATGCTGGTGTGCCATTCGAAGTGAACCAGTGGGCGAAAGTTGTAATAGAA 1239
||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 899 TTGTGTTCATATGCTGGTGTGCCATTCGAAGTGAACCAGTGGGAGAAAGTTGCAATAGAA 958
Query 1240 AAGCAGCAGCTTCAAACAGAACAGACTGGCTTACCATCATTAGCTTTGTGGTTGCGCTAC 1299
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 959 AAGCAGCAGCTTCGAACAGAACGGACTGGCTTACCATCATTAGCTTTGTGGTTGCGCTAC 1018
Query 1300 TTGCGATGGTTATCGCGACATTTTCGACAGGAATAGACTCCCAATGTTTCCAATTTAAGA 1359
| || |||||||| || |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1019 TCGCAATGGTTATTGCCACATTTTCTACAGGAATAGACTCCCAATGTTTCCAATTCAAGA 1078
Query 1360 AAGATGAGAACGATCAAGAAGAAGAAGCTGAAGATGATGTTCCATATGGCTATGGATTCT 1419
||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||
Sbjct 1079 AAGATGAGAACGATCAAGAAGAAGAAGAGGAAGATGGTGTTCCATATGGATATGGATTCT 1138
Query 1420 TTCATTTTGTGTTTGCCACAGGAGCAATGTACTTCGCTATGCTACTCATCGGTTGGAACA 1479
| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TCCATTTTGTATTTGCAACAGGAGCAATGTACTTCGCTATGCTACTCATCGGTTGGAACA 1198
Query 1480 CTCATCATCCCATGAAAAAGTGGACGATTGACGTGGGATGGACAAGTACTTGGGTAAGGG 1539
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1199 CTCATCACCCCATGAAAAAGTGGACGATTGACGTGGGATGGACGAGTACTTGGGTAAGGG 1258
Query 1540 TTGTGAACGAGTGGCTTGCGGTTTGCGTATACATTTGGATGTTGGTGGCTCCTCTCATAC 1599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TTGTGAACGAGTGGCTTGCGGTTTGCGTATACATTTGGATGTTGGTGGCTCCTCTCATAC 1318
Query 1600 TAAAGAGCAGAAGACAAACGCCAACTGGGACTTGATAGGTAAAGAGAGATTGGGAAACGA 1659
||||||||||||||||||| ||| |||||| ||| |||||| |||| |||||||||||
Sbjct 1319 TAAAGAGCAGAAGACAAACAACAAGTGGGACATGAGAGGTAAGGAGATTTTGGGAAACGA 1378
Query 1660 CAAAGAACTTTGTCGTTTTGGATCTCTTTTCACCTTGGGATAGAACTAAACCACGTTTTT 1719
||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||
Sbjct 1379 CAAAGAACTTTGTCGTTTTGGATCTCTTTTCTCCATGGGATAGAACTAAACCACCTTTTT 1438
Query 1720 CACCTACGACCAAGATGGAAGTTGCGGTAGCAAAGCAAACATGCTCTCATGGGTTTGGTG 1779
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1439 CACCTACGACCAAGATGGAAGTTGCGGTGGCAAAGCAAACATGCTCTCATGGGTTTGGTG 1498
Query 1780 GGAAAATAGT-Att 1792
|||||||||| |||
Sbjct 1499 GGAAAATAGTTATT 1512
> Ahg497050 jgi|Araly1|497050|fgenesh2_kg.9__15__AT4G13345.1
Length=1749
Score = 1055 bits (571), Expect = 0.0
Identities = 965/1151 (84%), Gaps = 44/1151 (4%)
Strand=Plus/Plus
Query 457 GCTATGAAGCAATCAAGAATGGATCATGGTTTAATCAGTTCCGCAACGGCTGCAATCCCT 516
||||||||| ||| ||||| || || ||||||| ||||| || || ||||||||||| |
Sbjct 370 GCTATGAAGGAATAAAGAACGGTTCGTGGTTTAGCCAGTTTCGTAATGGCTGCAATCCAT 429
Query 517 GGATGGCTAGATATGTATACGGTCTGATATTCCTCATT-GCGAATCTACTAGCTTGGG-C 574
|||||||||||||||| |||||||||||||||||| || || ||| | | ||||||| |
Sbjct 430 GGATGGCTAGATATGTGTACGGTCTGATATTCCTC-TTGGCAAATTTGTTGGCTTGGGCC 488
Query 575 -TGCTCGTGATTATGGTCGGGGTGCCTTAAGA-AAAG-TGACAAGATTCAAGAACTGTAA 631
|| || |||||||| || |||||||| || || ||| || ||||||||| |||||
Sbjct 489 TTG--CGCGATTATGGCCGAGGTGCCTT--GACCGAGATGAGAAAATTCAAGAATTGTAA 544
Query 632 AGGTGGCGAAAACTGTTTGGGGACCGACGGTGTCTTAAGAGTTAGCTTGGGATGTTTTTT 691
|| || | | | ||||||||||| || || || ||| |||| |||||||||||||||||
Sbjct 545 AGAAGGTGGAGAGTGTTTGGGGACGGAAGGAGTTTTACGAGTAAGCTTGGGATGTTTTTT 604
Query 692 GTTCTACTTT-GTTATGTTTCTTTCAACAC-TTGGTACGTCGAAA-ACGCATTCATCAAG 748
|||||| ||| |||||||||||||||| | |||| || || ||| ||| ||||||| ||
Sbjct 605 GTTCTA-TTTCATTATGTTTCTTTCAAC-CGTTGGCACATC-AAAGACGAATTCATCGAG 661
Query 749 AGATAGATGGCATTCTGGATGGTGGTTTGTTAAGCTCATCATGTGGCCTGCCTTAACCAT 808
||||| ||||||||| ||||||||||||| |||||| ||||||||| || |||||||||
Sbjct 662 AGATAAATGGCATTCAGGATGGTGGTTTGCTAAGCTTTTCATGTGGCTTGGCTTAACCAT 721
Query 809 CATT-CCCTTCTTGCTT-CCTTCTTCCATTATTCACCTTTACGGAGAGATTGCCCATTTT 866
| || ||||| ||| || ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 722 C-TTCCCCTTTTTG-TTGCCTTCTTCCATTATTCAGCTTTACGGGGAGATTGCCCATTTT 779
Query 867 GGTGCAGGGGTATTTCTCTTAATACAGCTAATTAGTGTGATCAGTTTCATTCA-ATGGCT 925
|||||||||||||||||| |||| ||||| |||||| | || ||||||||| | ||||||
Sbjct 780 GGTGCAGGGGTATTTCTCCTAATTCAGCTCATTAGTATCATTAGTTTCATT-ACATGGCT 838
Query 926 CAACGAATGCTAT-C-AGTCCCAAAAAGATGCAGAAAGATGCCGTGTCTATGTGATGTTA 983
||| ||||||| | | || | |||||||||||||||||||||| |||| |||||||| ||
Sbjct 839 CAATGAATGCT-TCCAAG-CACAAAAAGATGCAGAAAGATGCCATGTCCATGTGATGCTA 896
Query 984 CTATCAACTACTTCATACACAGTTTGCATAGTAGGAGTGATTTTGATGTACATTTGGTAC 1043
||| | |||||| | ||||| || |||||| |||| || ||||||||||||||||||||
Sbjct 897 CTAGCGACTACTGCGTACACCGTATGCATATTAGGGGTTATTTTGATGTACATTTGGTAT 956
Query 1044 GCGCCTGATTCTTCATGTCTTCTCAATATATTCTTT-ATAACATGGACTTTGTTCCTCAT 1102
| ||||||| | ||||| |||||||| ||||| ||| || ||||||||||||||||||||
Sbjct 957 GTGCCTGATCCATCATGCCTTCTCAACATATT-TTTCATCACATGGACTTTGTTCCTCAT 1015
Query 1103 CCAACTCATGACAAGCATCGCTCTCCATCCTAAAGTTAATGCTGGATACTTGACTCCAGC 1162
||||||||||||||| ||| ||||||| || ||| | |||||||||| ||||||||||||
Sbjct 1016 CCAACTCATGACAAGTATCTCTCTCCACCCCAAAATAAATGCTGGATTCTTGACTCCAGC 1075
Query 1163 TCTTATGGGACTCTATGTTGTGTTTATATGCTGGTGTGCCATTCGAAGTGAACCAGTGGG 1222
|||||||| || |||||||||||||| |||||||| |||||||||||||| ||||| ||
Sbjct 1076 ACTTATGGGGCTTTATGTTGTGTTTATCTGCTGGTGCGCCATTCGAAGTGAGCCAGTAGG 1135
Query 1223 CGAAAGTTGTAATAGAAAAGCAGCAGCTTCAAACAGAACAGACTGGCTTACCATCATTAG 1282
|||| ||| ||| ||||||| | || ||| | |||||||||||||||||||||||| ||
Sbjct 1136 AGAAACTTGCAATCGAAAAGCCGAAGGTTCTAGCAGAACAGACTGGCTTACCATCATAAG 1195
Query 1283 CTTTGTGGTTGCGCTACTTGCGATGGTTATCGCGACATTTTCGACAGGAATAGACTCCCA 1342
|||||| ||||| || |||| ||||| || |||||||| || || || |||| |||||
Sbjct 1196 CTTTGTTGTTGCACTGGTTGCAATGGTAATTGCGACATTCTCCACGGGCGTAGATTCCCA 1255
Query 1343 ATGTTTCCAATTTAAGAAA-GATGAGAACGATCAAGAAGAAGAAGCTGAAGATGATGTTC 1401
||||||||| |||| |||| |||||||| ||| || ||||| || || | | |
Sbjct 1256 ATGTTTCCAGTTTA-GAAAAGATGAGAA---TCATGAGGAAGATGC--AA--T--T---C 1302
Query 1402 CATATGGCTATGGATTCTTTCATTTTGTGTTTGCCACAGGAGCAATGTACTTCGCTATGC 1461
| || || ||||||||||| |||||||||||||| || |||||||||||||| || ||||
Sbjct 1303 CTTACGGATATGGATTCTTCCATTTTGTGTTTGCTACCGGAGCAATGTACTTTGCGATGC 1362
Query 1462 TACTCATCGGTTGGAACACTCATCATCCCATGAAAAAGTGGACGATTGACGT-GGGATGG 1520
|||| | || ||||||| ||||||| |||||||||||||||| |||||||| ||| |||
Sbjct 1363 TACTTGTTGGCTGGAACATTCATCATTCCATGAAAAAGTGGACCATTGACGTTGGG-TGG 1421
Query 1521 ACAAGTACTTGGGTAAGGGTTGTGAACGAGTGGCTTGCGGTTTGCGTATACATTTGGATG 1580
|||||||||||||||||| | |||||||| ||||| |||||| |||| || |||||||||
Sbjct 1422 ACAAGTACTTGGGTAAGGATAGTGAACGAATGGCTCGCGGTTGGCGTTTATATTTGGATG 1481
Query 1581 TTGGTGGCTCC 1591
|||||||||||
Sbjct 1482 TTGGTGGCTCC 1492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74275977750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5