BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24465.1
Length=264
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925217 jgi|Araly1|925217|scaffold_200778.1 305 8e-83
Ahg907620 jgi|Araly1|907620|Al_scaffold_0002_701 272 8e-73
Ahg925210 jgi|Araly1|925210|scaffold_200771.1 257 2e-68
Ahg933133 jgi|Araly1|933133|scaffold_401121.1 244 2e-64
Ahg925211 jgi|Araly1|925211|scaffold_200772.1 244 2e-64
> Ahg925217 jgi|Araly1|925217|scaffold_200778.1
Length=316
Score = 305 bits (165), Expect = 8e-83
Identities = 231/262 (88%), Gaps = 8/262 (3%)
Strand=Plus/Plus
Query 1 ATGGCAACTCAAACAACAAAAAAGATATACAGTGTTTTGATGATTGTAGTTTTATTTACG 60
|||||| ||||||||| |||||||||| |||||| ||||||||||||||||||||||||
Sbjct 21 ATGGCAGCTCAAACAATGAAAAAGATATGCAGTGTATTGATGATTGTAGTTTTATTTACG 80
Query 61 ATGATTGTTTCAACATACGCGAGTACGATGGAAGTGTGTGTTAAACACTGTATCCCGAAT 120
||||| |||||||||||||||| | | ||||||||||||||||||| ||| | ||||||
Sbjct 81 ATGATGGTTTCAACATACGCGAATTTGGTGGAAGTGTGTGTTAAACATTGTGTTCCGAAT 140
Query 121 CAATGCATGAAAGTTTCTCAA-AAGGCAACTCTTCCATTATGTGAGACTGCTTGCACAAA 179
|||||||||||||||||| || || ||||||||||| ||||||||||||||||||| |||
Sbjct 141 CAATGCATGAAAGTTTCT-AACAATGCAACTCTTCCTTTATGTGAGACTGCTTGCAGAAA 199
Query 180 ACTTTGCAATGAAAACAA--AG----ATGAGAAATATATCGTGCCTCGAAGCTACTGCGA 233
||| ||||||||| |||| | |||||||||| |||| ||||||||| ||||||||
Sbjct 200 ACTCTGCAATGAAGACAACCATTCTCATGAGAAATACATCGCGCCTCGAAGTTACTGCGA 259
Query 234 TGGATTATTCTGGTTTCTATGT 255
|||||| |||||||||||||||
Sbjct 260 TGGATTTTTCTGGTTTCTATGT 281
> Ahg907620 jgi|Araly1|907620|Al_scaffold_0002_701
Length=273
Score = 272 bits (147), Expect = 8e-73
Identities = 221/254 (87%), Gaps = 16/254 (6%)
Strand=Plus/Plus
Query 1 ATGGCAACTCAAACAACAAAAAAGATATACAG-TGTTTTGATGATTGTAGTTTTATTTAC 59
||||| |||||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct 1 ATGGCGACTCAAACAATGAAAAAGATATACAGTTG-TTTGATGATTGTAGTTTTATTTAC 59
Query 60 GATGA-TTGTTTCAACATACGCGAGTACGATGGAAGTGTGTGTTAAACACTGTATCCCGA 118
||| | | ||||||||||| ||||||||| |||||||||||||||| || ||| ||||||
Sbjct 60 GAT-AGTGGTTTCAACATATGCGAGTACGGTGGAAGTGTGTGTTAAGCATTGTGTCCCGA 118
Query 119 ATCAATGCATGAAAGTTTCTCAAAAGGCAACTCTTCCATTATGTGAGACTGCTTGCACAA 178
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||
Sbjct 119 ATCAATGCATGAAAGTTTCTCAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCA-AA 177
Query 179 AACTTT-GCAATGAAAACAAA------GATGAGAAA-TATATCGTGCCTCGAAGCTACT- 229
|| ||| |||| |||||||| ||||||||| | |||||||| |||||| | ||
Sbjct 178 AAGTTTTGCAACCAAAACAAATTTTCTGATGAGAAACT-TATCGTGCATCGAAGTT-CTT 235
Query 230 GCGATGGATTATTC 243
|||| |||||||||
Sbjct 236 GCGACGGATTATTC 249
> Ahg925210 jgi|Araly1|925210|scaffold_200771.1
Length=313
Score = 257 bits (139), Expect = 2e-68
Identities = 233/276 (84%), Gaps = 15/276 (5%)
Strand=Plus/Plus
Query 1 ATGGCAACTCAAACAACAAAAAAGATATACAG-TGTTTTGATGATTGTAGTTTTATTTAC 59
||||| |||||| ||| ||||| |||||||| || |||||||||||||||||||||||
Sbjct 21 ATGGCGACTCAAGCAATGAAAAATATATACAGTTG-TTTGATGATTGTAGTTTTATTTAT 79
Query 60 GATGATTGTTTCAACATACGCGAGTACGATGGAAGTGTGTGTTAAACACTGTATCCCGAA 119
|||||| |||| |||||| ||||||||| |||||||||||||||| || ||| |||||||
Sbjct 80 GATGATGGTTTTAACATATGCGAGTACGGTGGAAGTGTGTGTTAAGCATTGTGTCCCGAA 139
Query 120 TCAATGCATGAAAGTTTCTCAAAAGGCAACTCTTCCATTATGTGAGACTGCTTGCACAAA 179
||| |||||||||||||||||||||||||||||||| |||||||||| |||||||| |||
Sbjct 140 TCAGTGCATGAAAGTTTCTCAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAAAA 199
Query 180 ACTT-TGCAATGAAAACAAAG------ATGAGAAATATATCGTGCCTCGAAGCTACT-GC 231
| || ||||| |||||||| |||| ||| | |||||||||||||| | || ||
Sbjct 200 A-TTCTGCAACCAAAACAAATTTTCTCATGACAAACACATCGTGCCTCGAAGTT-CTTGC 257
Query 232 GATGGATTATTC---TGGTTTCTATGTGATAACTGA 264
|| ||||||||| ||||| |||||| |||| |||
Sbjct 258 GACGGATTATTCAGCTGGTTACTATGTAATAAGTGA 293
> Ahg933133 jgi|Araly1|933133|scaffold_401121.1
Length=316
Score = 244 bits (132), Expect = 2e-64
Identities = 176/198 (89%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 1 ATGGCAACTCAAACAACAAAAAAGATATACAGTGTTTTGATGATTGTAGTTTTATTTACG 60
||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 21 ATGGCGACTCAAACAATGAAAAAGATCTACAGTGTTTTGATGATTGTAGTTTTATTTACG 80
Query 61 ATGATTGTTTCAACATACGCGAGTACGATGGAAGTGTGTGTTAAACACTGTATCCCGAAT 120
||||| ||||||||||||||||||||| | |||||||||||||| || ||| ||||||||
Sbjct 81 ATGATGGTTTCAACATACGCGAGTACGGTAGAAGTGTGTGTTAAGCATTGTGTCCCGAAT 140
Query 121 CAATGCATGAAAGTTTCTCAAAAGGCAACTCTTCCATTATGTGAGACTGCTTGCACAAAA 180
|| || |||||||||||| ||||||||||| ||| |||||||||| |||||||| ||||
Sbjct 141 CAGTGTATGAAAGTTTCTAAAAAGGCAACTATTCTTTTATGTGAGAATGCTTGCAAAAAA 200
Query 181 CTTTGCAATGAAAACAAA 198
|| ||||| || |||||
Sbjct 201 CTCTGCAACCAAGACAAA 218
> Ahg925211 jgi|Araly1|925211|scaffold_200772.1
Length=316
Score = 244 bits (132), Expect = 2e-64
Identities = 178/200 (89%), Gaps = 4/200 (2%)
Strand=Plus/Plus
Query 1 ATGGCAACTCAAACAACAAAAAAGATATACAGTGTTTTGATGATTGTAGTTTTATTTACG 60
||||| |||||| ||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 21 ATGGCGACTCAAGCAATGAAAAAGATATACAGTATTTTGATGATTGTAGTTTTATTTACG 80
Query 61 ATGATTGTTTCAACATACGCGAGTAC-GATGGAAGTGTGTGTTAAACACTGTATCCCGAA 119
||||| |||||||||||||||| ||| | |||||||||||||||| || ||| |||||||
Sbjct 81 ATGATGGTTTCAACATACGCGAATACAG-TGGAAGTGTGTGTTAAGCATTGTGTCCCGAA 139
Query 120 TCAATGCATGAAAGTTTCTCAAAAGGCAACTCTTCCATTATGTGAGACTGCTTGCACAAA 179
||| ||||||||||||||| ||||||||||| |||| |||||||||| |||||||| |||
Sbjct 140 TCAGTGCATGAAAGTTTCTAAAAAGGCAACTATTCCTTTATGTGAGAATGCTTGCA-AAA 198
Query 180 A-CTTTGCAATGAAAACAAA 198
| || ||||| ||||||||
Sbjct 199 AGCTCTGCAACCAAAACAAA 218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9203370901
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5