BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24490.1
Length=1427
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930539 jgi|Araly1|930539|scaffold_302996.1 1629 0.0
> Ahg930539 jgi|Araly1|930539|scaffold_302996.1
Length=1045
Score = 1629 bits (882), Expect = 0.0
Identities = 990/1042 (95%), Gaps = 7/1042 (1%)
Strand=Plus/Plus
Query 234 TTCTGGGTTTTGCTCAAAGATGGGTGACAGCGAAGATGAAACAGGATACCCAAAAAAGTT 293
|||||||||||||||||||||||||||||||||||| ||||| || || |||||||||||
Sbjct 2 TTCTGGGTTTTGCTCAAAGATGGGTGACAGCGAAGAAGAAACTGGGTATCCAAAAAAGTT 61
Query 294 TTACTCTTTGAATCGGCAAAACCATCCAATGTATAGTAGACCAATACCTAAGCGTCACGC 353
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 62 TTACTCTTTGAATCGCCAAAACCATCCAATGTATAGTAGACCAATCCCTAAGCGTCACGC 121
Query 354 GTATTACAATgaagaagaagacgaagatgaagtcgaaggagaagaggaagaTCCACAAGG 413
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 122 GTATTACAATGAAGAAGAAGACGAAGATGAAGTCGAAGGCGAAGAAGAAGAGCCACAAGG 181
Query 414 AGGATACATTCGTGGAAATGAGAGGTTTCAGAAGAGACAGAAACCAAACAAA---GTAGT 470
|||||||| ||| || |||||||||||||||||||||||||||||||||||| || ||
Sbjct 182 AGGATACACTCGGGGGAATGAGAGGTTTCAGAAGAGACAGAAACCAAACAAACCTGTTGT 241
Query 471 TTCTGGGTTTGAATTTGCTGGTCCTAGTGATGCTAAAGTTGCGTATGATTGGAGAGAGCA 530
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 242 GTCTGGGTTTGAATTTGCTGGTCCTAGTGATACTAAAGTTGCGTATGATTGGAGAGAGCA 301
Query 531 AGAAGCTTTTGTGTTGCTTGAAGTTTGGGGAGATAGGTTTTTGCAATTGGGTAGAAGGAG 590
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 302 AGAAGCTTTTGTCTTGCTTGAAGTTTGGGGAGATAGGTTTTTGCAATTGGGTAGGAGGAG 361
Query 591 TTTGAGGAACGAGGATTGGAATGAAGTAGCTGAGAAAGTGAGTGAGGAGCTAAGGATGGA 650
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 TTTGAGGAATGAGGATTGGAATGAAGTAGCTGAGAAAGTGAGTGAGGAGCTAAGGATGGA 421
Query 651 GAAATCTGAGACGCAATGTAGGAGAATGATTGAT-GACTTGAAGAGGAAGTATAGAAAAG 709
|||||||||||||||||||||||| ||||||||| | |||||||||||||||||| ||||
Sbjct 422 GAAATCTGAGACGCAATGTAGGAGGATGATTGATAG-CTTGAAGAGGAAGTATAGGAAAG 480
Query 710 AGAAGATTAAGGTTGAGAAATCAGGTTTAGGTTCAAGTAAATGGTCGTTTTTCAATAAGT 769
|||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||
Sbjct 481 AGAAGATTAAGGTTGAGAAATCGGGTTTAGGTTCGAGTAAATGGGGGTTTTTCAATAAGT 540
Query 770 TGGATATGTTGCTTTGTGTTTCGCCCAAGTCGGATTTAGGTTTAGCTTGTGGTGTTGATT 829
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 541 TGGATATGTTGCTTTGTGTTTCGCCTAAATCGGATTTAGGTTTAGCTTGTGGTGTTGATT 600
Query 830 CAGGTGAGTTTGTGTTTATGAACACTAAGGTTTATTTAGATAAGTCTAATGGGTTtgatg 889
||||||||||||||||||||||||||||||||||||| |||||||| || || |||||||
Sbjct 601 CAGGTGAGTTTGTGTTTATGAACACTAAGGTTTATTTGGATAAGTCGAACGGATTTGATG 660
Query 890 agatgatggatagtcctggtgattctgaagaggaggaggatgaggatgatgaggttgagT 949
||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| |
Sbjct 661 AGATGATGGATAGTCCTGGTGATTCGGAAGAGGAGGAGGATGATGAAGATGAGGTTGATT 720
Query 950 ACGAGAGGAAGAAGGTTAATGACGCTGCTTCGTATAAGATGTTGGCGGATTCTGTTGAGA 1009
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 721 ACGAGAGGAAGAAGGTTAATGACGCTGCTTCGTATAAGATGTTGGCGGATTCGGTTGAGA 780
Query 1010 GGTTTGGGAAGGTTTATGAGAAGATGGAGAAGAGTAAGAAAGAGCAAATGAAGGAGTTGG 1069
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GGTTTGGGAAGATTTATGAGAAGATGGAGAAGAGTAAGAAAGAGCAAATGAAGGAGTTGG 840
Query 1070 AGAAGATGAGAGCTGATTTTCAGAGAG-ATTTGGAGTTGCAGAAGAAGCAGATTGTTGAT 1128
|||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||
Sbjct 841 AGAAGATGAGAGCTGATTTTCAGA-AGGATTTGGAGTTGCAGAAGAAACAGATTGTTGAT 899
Query 1129 AGAGCTCAGAGTGAGATTGCTAGGTTACGTGAAGAGGAGGAGAATCATCATGGTGGTGGT 1188
|||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||
Sbjct 900 AGAGCTCAGAGTGAGATTGCGCGGCTACGTGAAGAGGAAGAGAATCATCATGGTGGTGGT 959
Query 1189 GATGATGATGAGAGTGAAGATGAAGAAATGGAGAATGATTCTGATGTTAATCTCAGTGAT 1248
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AATGATGATGTGAGTGAAGATGAAGAAATGGAGAATGATTCTGATGTTAATCTCAGTGAT 1019
Query 1249 GAGTAAGTTATAAACTATGTAG 1270
|||| ||||||| |||||||||
Sbjct 1020 GAGTGAGTTATACACTATGTAG 1041
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53364433245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5