BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G24500.1

Length=630
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg479959 jgi|Araly1|479959|fgenesh2_kg.3__2660__AT3G24500.1         732    0.0  


> Ahg479959 jgi|Araly1|479959|fgenesh2_kg.3__2660__AT3G24500.1
Length=447

 Score =  732 bits (396),  Expect = 0.0
 Identities = 430/447 (96%), Gaps = 0/447 (0%)
 Strand=Plus/Plus

Query  77   ATGCCGAGCAGATACCCAGGAGCAGTAACACAAGACTGGGAACCAGTAGTTCTCCACAAA  136
            |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct  1    ATGCCGAGCAGATACCCAGGAGCAGTGACACAAGACTGGGAACCAGTAATTCTCCACAAA  60

Query  137  TCAAAACAAAAGAGCCAAGACCTACGCGATCCGAAAGCGGTTAACGCAGCTCTGAGAAAC  196
            |||||||||||||| ||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct  61   TCAAAACAAAAGAGTCAAGACCTACGCGATCCAAAAGCGGTTAACGCAGCGCTTAGAAAC  120

Query  197  GGTGTCGCGGTTCAAACGGTTAAGAAATTCGATGCCGGTTCGAACAAAAAGGGGAAATCT  256
            || ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct  121  GGCGTCGCGGTTCAAACGGTTAAGAAATTCGACGCCGGTTCTAACAAAAAGGGGAAATCT  180

Query  257  ACGGCGGTTCCGGTGATTAACACGAAGAAGCTGGAAGAAGAAACAGAGCCTGCGGCGATG  316
            |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  181  ACGGCGGTTCCGGTTATTAACACGAAGAAGCTGGAGGAAGAAACAGAGCCTGCGGCGATG  240

Query  317  GATCGTGTGAAAGCAGAGGTGAGGTTGATGATACAGAAAGCGAGATTGGAGAAGAAGATG  376
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  241  GATCGTGTGAAAGCAGAGGTGAGGTTGATGATACAGAAGGCGAGATTGGAGAAGAAGATG  300

Query  377  TCACAAGCGGATTTGGCGAAACAGATCAATGAGAGGACTCAGGTAGTTCAGGAATATGAG  436
            || ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct  301  TCGCAAGCGGATTTGGCGAAACAGATCAATGAAAGGACTCAGGTGGTTCAGGAATATGAG  360

Query  437  AATGGTAAAGCTGTTCCTAATCAGGCTGTGCTTGCGAAGATGGAGAAGGTTCTAGGTGTT  496
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  361  AATGGTAAAGCTGTTCCTAATCAAGCTGTGCTTGCGAAGATGGAGAAGGTTCTAGGTGTT  420

Query  497  AAACTTAGGGGTAAAATTGGGAAATGA  523
            |||||||||||||||||||| ||||||
Sbjct  421  AAACTTAGGGGTAAAATTGGTAAATGA  447



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23064364785


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5