BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24506.1
Length=695
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930544 jgi|Araly1|930544|scaffold_303001.1 549 9e-156
Ahg480607 jgi|Araly1|480607|fgenesh2_kg.3__3308__AT2G17240.1 248 4e-65
> Ahg930544 jgi|Araly1|930544|scaffold_303001.1
Length=546
Score = 549 bits (297), Expect = 9e-156
Identities = 453/522 (87%), Gaps = 35/522 (7%)
Strand=Plus/Plus
Query 27 TCGAAGAACACGAGGCGGAGCTATGACGCCGCTTTCTATATCGGCATCGCCTTCGCCGCC 86
|||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 TCGAAG-A-ACGAGGCGGAGCTATGACGCCGCTTTCTATATCGGCATCACCTTCGCCGCC 58
Query 87 GTGGCCACTTCTCTCTCCGCCACTATCTTCATCGTCGTTAAACAGAGCTGCTCCGTCTAT 146
||| ||||||||||||||||||||||||||| ||||| |||||||| ||| | |
Sbjct 59 GTGTCCACTTCTCTCTCCGCCACTATCTTCACCGTCGCTAAACAGA---GCT--G---A- 109
Query 147 TTTTTCCCCTTTCTCTCGAATCAACCATGGCTTCTCGTGCTCTTTCATCGCCGTTCAACG 206
|||| ||| | ||| | || | || || || | || |||| || || | || |
Sbjct 110 ATTTT----TTT-T-TCG-A--AA-C--GG-TTGTC-T-ATC-TTCACCGTCGCT-AA-G 151
Query 207 CTTCGCTCTAAGCCG-CAAGA-CAAGGAAGCAGTTACAGGTGGTGGCTATGGCTCCTGAG 264
| ||| || || | || | || ||||||||||||||||||| |||||||||||||||
Sbjct 152 C--CGCAATACGCAGAGAAAAGCATGGAAGCAGTTACAGGTGGTAGCTATGGCTCCTGAG 209
Query 265 GAAGAGAAGCTCACTCGTCGCAATCCTCTCGATTTCCCTATCGAATGGGAGAGACCAAAG 324
||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 210 GAAGAGAAGCTCACTCGTCGCAACCCACTCGATTTCCCTATAGAATGGGAGAGACCAAAG 269
Query 325 CCAGGGAGGAGACCAGATATATTCCCAAAGTTTAGTCCTATGAAGTCACCGTTGCCTCCT 384
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 270 CCAGGCAGGAGACCAGATATATTCCCTAAGTTTAGTCCTATGAAGTCACCGTTGCCTCCT 329
Query 385 CCTATGCCTTATGATCCTCCagaagaagaggaagaagaggaagagaagaaagaagaagaa 444
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 330 CCTATGCCTTACGATCCTCCAGAAGAAGATGAAGAAGAGGAAGAGAAGAAAGAAGAAGAA 389
Query 445 actgaagatgaccctgaaaaggaagaCGAGGACCAACCCGATAACCGGTCGTAAGAGGTT 504
|| ||||| ||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 390 ACAGAAGACGACCCTGAAAAGGAAGACGAGGACCAACCCGATAACCAGTAGTAAGAGGTC 449
Query 505 TCATTTTTTCTAACTGTTATTGTTGTTGttttt-ttGCCTTA 545
|||||| | | ||||||||| |||||||||| | ||||||||
Sbjct 450 TCATTTCT-CAAACTGTTATCGTTGTTGTTTGTCTTGCCTTA 490
> Ahg480607 jgi|Araly1|480607|fgenesh2_kg.3__3308__AT2G17240.1
Length=619
Score = 248 bits (134), Expect = 4e-65
Identities = 212/249 (85%), Gaps = 7/249 (3%)
Strand=Plus/Plus
Query 239 TACAGGTGGTGGCTATGGCTCCTGAGGAAGAGAAGCTCACTCGTCGCAATCCTCTCGATT 298
|||| || ||| |||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 225 TACACGTTGTGTCTATGGCTCCCGAGGAAGAAAAGCTCACTCGTCGCAATCCTCTCGATT 284
Query 299 TCCCTATCGAATGGGAGAGACC-AAAGCCAGGGAGGAGACCAGATATATTCCCAAAGTTT 357
|||| || || ||||| ||||| ||| || |||||||| || || || ||||| ||||||
Sbjct 285 TCCCAATTGAGTGGGAAAGACCTAAA-CCTGGGAGGAGGCCTGACATTTTCCCCAAGTTT 343
Query 358 AGTCCTATGAAGTCACCGTTGCCTCCTCCTATGCCTTATGATCCTCCagaagaagaggaa 417
|| ||||||||| |||| ||||| || || ||||||||||||||||| |||||||| |||
Sbjct 344 AGCCCTATGAAGACACCATTGCCACCGCCGATGCCTTATGATCCTCCTGAAGAAGATGAA 403
Query 418 gaagaggaagagaagaaagaagaagaaactgaagatgaccctgaa-aaggaagaCGAGGA 476
||||||||||||||||||||||| ||| ||||| |||| || ||| |||| |||||
Sbjct 404 GAAGAGGAAGAGAAGAAAGAAGAGGAA---GAAGAAAACCCAGACCAAG-AAGAAGAGGA 459
Query 477 CCAACCCGA 485
||||||||
Sbjct 460 ACAACCCGA 468
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25542354390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5