BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G24510.1

Length=373
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg479962 jgi|Araly1|479962|fgenesh2_kg.3__2663__AT3G24510.1         435    1e-121


> Ahg479962 jgi|Araly1|479962|fgenesh2_kg.3__2663__AT3G24510.1
Length=365

 Score =  435 bits (235),  Expect = 1e-121
 Identities = 331/375 (88%), Gaps = 15/375 (4%)
 Strand=Plus/Plus

Query  1    CGAGACTAAACATTGAAAAATCCAAAGCTCCCATTCTAAAAATTTGAAAATGAAGAACGC  60
            ||||||||||| ||| |||||| |||||||||| ||| ||||||||||||||||||||||
Sbjct  1    CGAGACTAAACTTTGGAAAATCAAAAGCTCCCACTCTGAAAATTTGAAAATGAAGAACGC  60

Query  61   TTCTCTCAAGCTCCCACTCTTGATCTTCATTTTGGTCATCACATCTAATCTTGGAGCAGA  120
            |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct  61   TTCTCTCAAGCTCCCACTCTTGATTTTTATTTTGGTCATCACATCTAATCTTGGAGCAGA  120

Query  121  AGCAAGAAAGCTGACCGGAGTTGCTGACGTAATTGTT-GAAGGTGAAGCCGCAAGTCCAC  179
            ||||||||||||||||||||||| |||  || ||  | |||||||  |||||||||||||
Sbjct  121  AGCAAGAAAGCTGACCGGAGTTGATGATATA-TTAATCGAAGGTGCCGCCGCAAGTCCAC  179

Query  180  AGTACGGTAT-CATCGATGA-GAATGACACTTTGAACAAATCCCCATCTTGCAAGAGGGA  237
            |||||| ||  || |||||| || |||||| ||||||||| |||||||||||||||||||
Sbjct  180  AGTACG-TAGACACCGATGACGA-TGACACATTGAACAAAGCCCCATCTTGCAAGAGGGA  237

Query  238  CATCGACTGTACTTTTCAGTGTCGCAGGGGAGGATTCTGCAACCTAATCCTTCAAAAATG  297
            ||||||||||| ||||||||||| || |||||||||||||||||||  ||||   |||||
Sbjct  238  CATCGACTGTAGTTTTCAGTGTCCCAAGGGAGGATTCTGCAACCTACGCCTTGGCAAATG  297

Query  298  TGAATGTTTGTAATAATATTTACAATCGCATTATAATCTAAGTTT--ATCAATAAAAGTT  355
            ||||||||||||||||||   |   ||||||||||||| || |||  |||||||||| ||
Sbjct  298  TGAATGTTTGTAATAATA---A---TCGCATTATAATC-AACTTTTTATCAATAAAAATT  350

Query  356  ATATATCAATTCTTC  370
            || ||||||||||||
Sbjct  351  ATCTATCAATTCTTC  365



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13316300561


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5