BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24513.1
Length=258
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905576 jgi|Araly1|905576|Al_scaffold_0003_2704 357 2e-98
> Ahg905576 jgi|Araly1|905576|Al_scaffold_0003_2704
Length=255
Score = 357 bits (193), Expect = 2e-98
Identities = 238/259 (92%), Gaps = 5/259 (2%)
Strand=Plus/Plus
Query 1 ATGATTAACGTTTCTCTCAAGCGGTCACTCTTGATTTTCATTTCGGTCATCACATCTAAT 60
||||| |||||||||||||| | |||||||||||||||||||| ||||||||||||||||
Sbjct 1 ATGATGAACGTTTCTCTCAAACTGTCACTCTTGATTTTCATTTTGGTCATCACATCTAAT 60
Query 61 ATTGGATCAGAAGCAAGAGAGCTAACCGGAGCTGGTAAGAAACTCGAAGTTGCCACCAGA 120
||||||||||||||||||||||||||||||| || |||||||||||||||||| ||| ||
Sbjct 61 ATTGGATCAGAAGCAAGAGAGCTAACCGGAGTTGATAAGAAACTCGAAGTTGCTACCGGA 120
Query 121 AGTTCAAATTACG-CAGGCACTGCAAGGACCTTGTTGCAAGCCCGACCTTGCCAAAGGGA 179
||||||||||||| | |||||||| ||||||||| || |||||||||||| |||||||
Sbjct 121 AGTTCAAATTACGGC-GGCACTGCCAGGACCTTGGTG---GCCCGACCTTGCAAAAGGGA 176
Query 180 TGTTGATTGTAACTTTCAATGTCCTAGAATCCAAGGAGGACAATGCAATAATCACCATGG 239
||||||||||||| ||||||||| |||||||||||||||||||||||| ||| ||||||
Sbjct 177 TGTTGATTGTAACCATCAATGTCCCAGAATCCAAGGAGGACAATGCAATCATCGCCATGG 236
Query 240 CACATGTGATTGTTTCTAA 258
|||||||||||||||||||
Sbjct 237 CACATGTGATTGTTTCTAA 255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8974241335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5