BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G24513.1 Length=258 Score E Sequences producing significant alignments: (Bits) Value Ahg905576 jgi|Araly1|905576|Al_scaffold_0003_2704 357 2e-98 > Ahg905576 jgi|Araly1|905576|Al_scaffold_0003_2704 Length=255 Score = 357 bits (193), Expect = 2e-98 Identities = 238/259 (92%), Gaps = 5/259 (2%) Strand=Plus/Plus Query 1 ATGATTAACGTTTCTCTCAAGCGGTCACTCTTGATTTTCATTTCGGTCATCACATCTAAT 60 ||||| |||||||||||||| | |||||||||||||||||||| |||||||||||||||| Sbjct 1 ATGATGAACGTTTCTCTCAAACTGTCACTCTTGATTTTCATTTTGGTCATCACATCTAAT 60 Query 61 ATTGGATCAGAAGCAAGAGAGCTAACCGGAGCTGGTAAGAAACTCGAAGTTGCCACCAGA 120 ||||||||||||||||||||||||||||||| || |||||||||||||||||| ||| || Sbjct 61 ATTGGATCAGAAGCAAGAGAGCTAACCGGAGTTGATAAGAAACTCGAAGTTGCTACCGGA 120 Query 121 AGTTCAAATTACG-CAGGCACTGCAAGGACCTTGTTGCAAGCCCGACCTTGCCAAAGGGA 179 ||||||||||||| | |||||||| ||||||||| || |||||||||||| ||||||| Sbjct 121 AGTTCAAATTACGGC-GGCACTGCCAGGACCTTGGTG---GCCCGACCTTGCAAAAGGGA 176 Query 180 TGTTGATTGTAACTTTCAATGTCCTAGAATCCAAGGAGGACAATGCAATAATCACCATGG 239 ||||||||||||| ||||||||| |||||||||||||||||||||||| ||| |||||| Sbjct 177 TGTTGATTGTAACCATCAATGTCCCAGAATCCAAGGAGGACAATGCAATCATCGCCATGG 236 Query 240 CACATGTGATTGTTTCTAA 258 ||||||||||||||||||| Sbjct 237 CACATGTGATTGTTTCTAA 255 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 8974241335 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5