BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24515.1
Length=1399
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930549 jgi|Araly1|930549|scaffold_303006.1 1751 0.0
> Ahg930549 jgi|Araly1|930549|scaffold_303006.1
Length=1278
Score = 1751 bits (948), Expect = 0.0
Identities = 1186/1295 (92%), Gaps = 40/1295 (3%)
Strand=Plus/Plus
Query 52 GACGAAGAAGTTTCTGAATCAATGGCTCAAGCAGCGAGATTAAGCCTGAGAATGCAGAAA 111
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||
Sbjct 1 GACGAAGAAGTTTCTGAATCAATGGCTCAAGCAGCGAGACTAAGCATGAGAATGCACAAA 60
Query 112 GAGCTAAAGCTTCTCCTCTCCGATCCACCTCACGGCGCTTCGTTTCCACATCTCTCTTCC 171
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 GAGCTAAAGCTTCTCCTCTCCGATCCACCTCATGGCGCTTCGTTTCCACATCTCTCTTCC 120
Query 172 GCCGCCAATGGCTCCGGCGATTTCTCCACTTTCTCCACCATCGATGCTCAAATCGAAGGT 231
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCCGCCTCTGGCTCCGGCGACTTCTCCACTTTCTCCACCATCGATGCTCAAATCGAAGGT 180
Query 232 CCTGAAGATACTGTATATGCTAATGGAATCTTCAATTTGAAGATTCAAATCCCTGAGAGA 291
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 181 CCTGAAGATACTGTATATGCTAATGGAATCTTCAATGTGAAGATTCAAATCCCTGAGAGA 240
Query 292 TATCCATTTCAGCCACCAATTGTGTCGTTCGCTACACCGATTTATCACCCAAACATCGAT 351
|||||||||||||| ||||||||| | || |||||||||||||||||||||||||||||
Sbjct 241 TATCCATTTCAGCCTCCAATTGTGGCATTTTCTACACCGATTTATCACCCAAACATCGAT 300
Query 352 AACAGTGGCCGGATTTGCCTTGACATTCTAAATCTCCCTCCCAAGGGAGCTTGGCAACCA 411
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 301 AACAGTGGCCGGATTTGCCTTGACATTCTTAATCTCCCTCCCAAGGGTGCTTGGCAACCA 360
Query 412 TCGTTGAATATCTCGACAGTTTTGACGAGTAT-GAGATTGTTGCTTAGTGAACCAAATCC 470
|||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||
Sbjct 361 TCGTTGAATATCTCGACAGTTTTGACGAGTATCG-GATTGTTGCTTAGTGAACCGAATCC 419
Query 471 TGATGATGGATTGATGTGTGAAGTAAGCAGGGAGTATAAATACAATAGACAAACTTTTGA 530
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 420 GGATGATGGATTGATGTGTGAAGTAAGCAGGGAGTATAAATACAATAGGCAAACTTTCGA 479
Query 531 TTATAAGGCACGAGAGATGACTGAGAAGTATGCTAAGGTTAAAGC-TGATGGATGCAGCA 589
|||||| ||||||||||||||||||||||||||||||||||| || ||||||| ||||||
Sbjct 480 TTATAAAGCACGAGAGATGACTGAGAAGTATGCTAAGGTTAA-GCCTGATGGAAGCAGCA 538
Query 590 CCAGCTTACAAATTAAGAATCATGGAGATGAGAAG-TCTGGTGAAAGTGGAAATAGTGTT 648
||||||| ||||||||||||||||||||||||||| | || |||||||||||||||||||
Sbjct 539 CCAGCTTCCAAATTAAGAATCATGGAGATGAGAAGGTTTG-TGAAAGTGGAAATAGTGTT 597
Query 649 A-AGCT--TAAGTTGAC-A-GTG---GAATCTTCTTTAAGCATAGCACATACAGTGAAAC 700
|||| ||| | ||| | | | |||||||| ||||||||||||||||||||||| |
Sbjct 598 TTAGCTGGTAA-T-GACGATGGGATTGAATCTTCCTTAAGCATAGCACATACAGTGAACC 655
Query 701 GTGA-GACTGCAGGGAGAGATGAACAAGAGGATGGCAATGGGAAAAGAAAAGCAGTGGTT 759
||| | ||||| || |||| ||||||||||| | ||||||||||||||||||||||||
Sbjct 656 ATGACGT-TGCAGCGAAAGATCAACAAGAGGATAGAAATGGGAAAAGAAAAGCAGTGGTT 714
Query 760 GGTTTTGGCGAGGGGAATTCGTTTGGAAACGATGGGATTAAAAGGAGTAGGAAGAAGTTA 819
||||||||||||| |||||| ||||| ||||||||||| |||| ||| ||||||||||||
Sbjct 715 GGTTTTGGCGAGGCGAATTCATTTGGTAACGATGGGATAAAAACGAGCAGGAAGAAGTTA 774
Query 820 TCTCTTGCATTGCCTTCTCAATCTCAAAAGAAAGACTTGTGTGGTGAAGAAGAGCTCACA 879
|||||||| |||||| |||||||||||||||| |||||||||||||||||| ||||||
Sbjct 775 TCTCTTGCCTTGCCTCCTCAATCTCAAAAGAAGGACTTGTGTGGTGAAGAA---CTCACA 831
Query 880 CGTGGT-GTTTCAGCTGCTTGCAAAGAAAACAAAAAACCAAATTTGAATGGAAAGAAGCT 938
|| | ||||| || ||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 832 AATG-TAGTTTCGGCAGCTTGCAAAGAAAACAAGAAACCAAATTCAAATGGAAAGAAGCT 890
Query 939 TTCTCTGGGGCTGAAGCAGCCATGTAATGATA-CTTTGGC------GAGTTTTCGAACTT 991
||||||||||||||||||||||| |||||||| ||| ||| ||||||||||||||
Sbjct 891 TTCTCTGGGGCTGAAGCAGCCATTTAATGATAACTT-GGCCTTCTCGAGTTTTCGAACTT 949
Query 992 CTGCTGCGAAGAGTGACAACAATAGACTAAGCCGAAAACTGTCCCTGAGATCA-CCACTT 1050
||||||| |||||||||||||||||||||||| ||||||||||| ||||| || ||||||
Sbjct 950 CTGCTGCAAAGAGTGACAACAATAGACTAAGCAGAAAACTGTCCTTGAGA-CAACCACTT 1008
Query 1051 GGAGAGTTGAATGAAGTTAGCAAA-CCTGAGGTACTTGCGCAAACTGATATGAAACTGGA 1109
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1009 AGAGAGTTGAATGAAGTTAGCAAAACC-GAGGTACTTGCGCAAACTGATATGAAACTGGA 1067
Query 1110 GATGAATCAAAATGAAGATG-CAAGAAGTTTGCGAGGTGAGTTTGAGAATTCGGTATTGG 1168
||||||||||||||||||| || |||||| ||| |||||||||||||| |||| ||||
Sbjct 1068 AATGAATCAAAATGAAGATGACA-GAAGTTGGCGCGGTGAGTTTGAGAACTCGGGCTTGG 1126
Query 1169 AAGAAACATCAATGGCTGAATCCATTGTTGTTCTAGACAGTGATGATAGTGGACAAGAAG 1228
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 AAGAAGCATCAATGCCTGAATCCATTGTTGTTCTAGACAGTGATGATAGTGGACAAGAAG 1186
Query 1229 AAGAAGAAAGAGTCTCTTCTTCGAGGTCAAGATTATCACTGGCAAAGAGGAGAGTCCTCA 1288
||||||||| |||||||| | |||||||||||||||||| ||||||| ||||||||||
Sbjct 1187 AAGAAGAAACAGTCTCTT-T--GAGGTCAAGATTATCACTACCAAAGAGAAGAGTCCTCA 1243
Query 1289 AATGTAGACCTTGATAAGTGATGAAAACTGttttt 1323
| |||||||||||| ||||||||||||||||||||
Sbjct 1244 AGTGTAGACCTTGAAAAGTGATGAAAACTGTTTTT 1278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52297906385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5