BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24535.1
Length=567
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332998 jgi|Araly1|332998|fgenesh1_pm.C_scaffold_9000026 804 0.0
> Ahg332998 jgi|Araly1|332998|fgenesh1_pm.C_scaffold_9000026
Length=576
Score = 804 bits (435), Expect = 0.0
Identities = 522/563 (93%), Gaps = 9/563 (2%)
Strand=Plus/Plus
Query 1 ATGGTTCTTAGAAGCTCAATCTCCAACACAAGAAAACTCTTCCAAAAAACTATCGACAAC 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGTTCTTAGAAGCTCAATCTCCAACACAAGAAAGCTCTTCCAAAAAACTATCGACAAC 60
Query 61 TTCAAGTCATTCTTCTTCAACAACGGTACTTATCACAAACTACCAAAAACACCTAACAAC 120
|||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 61 TTCAAGTCATTCTTCTTCAACAACGGCACGTATCATAAACTACCAAAAACACCTAACAAC 120
Query 121 ACCTCTACCAATATTAATAATGATCATCCAAACTCC-A-A-cat--catc---a-catca 171
||||||||||||| || ||||||||||||||| ||| | | ||| |||| | |||||
Sbjct 121 ACCTCTACCAATAATACTAATGATCATCCAAAGTCCAACATCATCACATCATTATCATCA 180
Query 172 tcatcatcatcCATACACAAGCAATTTCAACCTAAACCCAAAGACTATGTGACTACAAAC 231
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 TCATCATCATCCATACACAAGCAGTTTCAACCTAAACCCAAAGACTATGTGACTACAAAC 240
Query 232 AAAGCTTCGAGTCTACAACCGAGAATAGGAGACAGAGACGAGACACTCTTTTCCCAACCA 291
||||||| | |||||||||||||| | |||||||||||||||||| ||||| ||||||
Sbjct 241 AAAGCTTTAACTCTACAACCGAGAAGCGAAGACAGAGACGAGACACTATTTTCTCAACCA 300
Query 292 AAGGTTAATCTAGTTCGTACAAAACTAAAGGAGATGGAGAAAATGATGAATGATGATATA 351
||||| ||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGGTAAATCTTGTTCGTAGAAAGCTAAAGGAGATGGAGAAAATGATGAATGATGATATA 360
Query 352 ATAAGTGATGAATATTATGTCTCAGATGTAATAGAATTTTTGCATTGCTACTCTCGTCTT 411
|||| ||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 361 GTAAGCGATGATTATTATGTCTCAGATGTAAGAGAGTTTTTGCATTGCTACTCTCGTCTT 420
Query 412 CGTTACACTGCTTACCTCGACGTGGTTGAGAATTTTTTCATGGAGGTCTACTCTGATTTC 471
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 421 CGTTACACTGCTTACCTCGACGTGGTTGAGCATTTTTTCATGGAGGTCTACTCTGATTTC 480
Query 472 TTTAGCCCTCATCATCTCGTGGGCACCCGAACGGCTGTACAAAGAAGGTATCCCGCGGTT 531
||||||||||||||||||| ||||||||||||||||||| |||||||| | ||||||||
Sbjct 481 TTTAGCCCTCATCATCTCGAGGGCACCCGAACGGCTGTAAAAAGAAGGCACCCCGCGGTG 540
Query 532 GTTGGAATTGGATCGTACGGTGG 554
|||||| ||||||||||||||||
Sbjct 541 GTTGGAGTTGGATCGTACGGTGG 563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20718484827
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5