BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24540.1
Length=1530
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905580 jgi|Araly1|905580|Al_scaffold_0003_2708 1280 0.0
Ahg319144 jgi|Araly1|319144|fgenesh1_pm.C_scaffold_3002160 1123 0.0
Ahg479967 jgi|Araly1|479967|fgenesh2_kg.3__2668__AT3G24550.1 878 0.0
Ahg475678 jgi|Araly1|475678|fgenesh2_kg.2__808__AT3G24550.1 861 0.0
Ahg896748 jgi|Araly1|896748|Al_scaffold_0005_714 145 1e-33
> Ahg905580 jgi|Araly1|905580|Al_scaffold_0003_2708
Length=1326
Score = 1280 bits (693), Expect = 0.0
Identities = 874/959 (91%), Gaps = 21/959 (2%)
Strand=Plus/Plus
Query 209 CTCCACCGCCTCCTCCGCGGTCTCCCTCCACATCCA-CTCCACCTAGGTTGGGAAATCGA 267
|||| || ||||||| ||||||||||||||||| || |||| ||| ||||||| | |||
Sbjct 98 CTCCTCCTCCTCCTCGGCGGTCTCCCTCCACAT-CACCTCCGCCTGGGTTGGGCAGTCGG 156
Query 268 AACCCTCCACCTCCAGCGAGTCCCTCTGGCCA-GGA--ACCTACAACTCCAACTATGACC 324
| ||||||||||||||| |||||||||||| | ||| ||||||||||||||||| |||
Sbjct 157 AGCCCTCCACCTCCAGCTAGTCCCTCTGGCGAGGGATCTCCTACAACTCCAACTATCACC 216
Query 325 CCAGGCTTTTCTCTATCACCGCCGTCTCCCTC-A-A-GATTATCAACGGGAGCTGTGGTC 381
||||||||||||||||| ||||||||| |||| | | |||||||||||||| |||||||
Sbjct 217 CCAGGCTTTTCTCTATCTCCGCCGTCTTCCTCAACATTATTATCAACGGGAGTTGTGGTC 276
Query 382 GGGATCTCCATAGGAGGA---G--GAG-TT-TT-T-GTGTTGACTTTGAttt-ttttCCT 431
|||||| ||||||||||| | | | || || | |||||||||||||||| |||| ||
Sbjct 277 GGGATCGCCATAGGAGGAGTTGCTGTGCTTGTTGTGGTGTTGACTTTGATTTGTTTT-CT 335
Query 432 TTGTAAGAAGAAACGACCAAGAGACGATAAAGCACTTCCGGCTCCCATAGGCATCCATCA 491
||||||||||||||||| |||||||||| ||||||||||| ||||||||||||| |||||
Sbjct 336 TTGTAAGAAGAAACGACGAAGAGACGATGAAGCACTTCCGACTCCCATAGGCATACATCA 395
Query 492 AAGCACTTTCACTTACGGGGAGCTAGCTAGA-GCCACCAATAAATTCTCTGAGGCCAATT 550
||| |||||||||||||||||||| |||| | ||||||||||||||||||||||||||||
Sbjct 396 AAGAACTTTCACTTACGGGGAGCTCGCTA-ATGCCACCAATAAATTCTCTGAGGCCAATT 454
Query 551 TGTTAGGAGAGGGTGGATTTGGATTCGTATACAAAGGTATATTGAATAATGGAAATGAAG 610
| ||||||||||| |||||||||| |||||||||||||||||||| ||||||||| ||||
Sbjct 455 TTTTAGGAGAGGGCGGATTTGGATACGTATACAAAGGTATATTGACTAATGGAAAAGAAG 514
Query 611 TTGCAGTTAAACAGTTGAAAGTAGGGAGTGCTCAGGGTGAGAAAGAGTTTCAGGCTGAGG 670
||||||| ||||||||||||| ||||||||||||||| | || ||||||||||||||||
Sbjct 515 TTGCAGTGAAACAGTTGAAAGCAGGGAGTGCTCAGGGGGGGAGGGAGTTTCAGGCTGAGG 574
Query 671 TTAATATTATTAGCCAAATTCACCATAGGAATTTGGTTTCCCTTGTCGGTTATTGCATCG 730
||||||||||||||||||||||||| ||| |||||||||| ||||| |||||||||||||
Sbjct 575 TTAATATTATTAGCCAAATTCACCACAGGCATTTGGTTTCTCTTGTTGGTTATTGCATCG 634
Query 731 CTGGTGCTCAAAGATTGCTTGTCTATGAGTTTGTTCCCAACAACACTCTCGAGTTTCACC 790
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 635 CCGGTGCTCAAAGGTTGCTTGTCTATGAGTTTGTTCCCAACAACACTCTCGAGTTTCACC 694
Query 791 TCCATGGGAAAGGACGGCCTACGATGGAATGGAGTTTAAGATTAAAGATTGCTGTCAGTT 850
|||||||||| ||||||||||||||||||||||||| |||| | ||||||||||| |||
Sbjct 695 TCCATGGGAAGGGACGGCCTACGATGGAATGGAGTTCAAGAATGAAGATTGCTGTTGGTT 754
Query 851 CTTCCAAAGGATTGTCTTATCTTCATGAAAATTGCAATCCTAAAATCATCCACCGTGATA 910
|| |||||||||||||| ||||||||||||||| |||||| ||||||||||||||||| |
Sbjct 755 CTGCCAAAGGATTGTCTCATCTTCATGAAAATTACAATCCAAAAATCATCCACCGTGACA 814
Query 911 TCAAGGCGGCAAACATATTGATTGATTTCAAATTTGAAGCAAAGGTTGCTGATTTTGGTC 970
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 815 TCAAGGCGGCAAACATATTGATTGATATCAAATTTGAAGCAAAAGTTGCTGATTTTGGTC 874
Query 971 TCGCCAAGATTGCTTTGGATACAAACACTCATGTATCTACACGTGTTATGGGAACCTTTG 1030
| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 875 TTGCCAAGATTGCTTTGGATACAAACACTCATGTATCTACACGCGTGATGGGAACCTTTG 934
Query 1031 GGTATTTGGCTCCGGAATATGCTGCAAGTGGAAAGCTTACTGAAAAGTCTGATGTTTACT 1090
||||||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 935 GGTATTTTGCTCCAGAATATGCTGCAAGTGGAAAGCTCACAGAAAAGTCTGATGTTTACT 994
Query 1091 CATTCGGCGTTGTACTTTTGGAGCTAATAACGGGACGTCGCCCTGTTGATGCAAACAAT 1149
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 995 CATTCGGCGTTGTACTTTTGGAGTTAATAACCGGACGTCGCCCTGTTGATGCAAACAAT 1053
> Ahg319144 jgi|Araly1|319144|fgenesh1_pm.C_scaffold_3002160
Length=1362
Score = 1123 bits (608), Expect = 0.0
Identities = 832/941 (88%), Gaps = 12/941 (1%)
Strand=Plus/Plus
Query 479 TAGGCATCCATCAAAGCACTTTCACTTACGGGGAGCTAGCTAGAGCCACCAATAAATTCT 538
|||||||| ||||| ||||||||| ||||| ||||||| |||||||||||||| ||||
Sbjct 218 TAGGCATCTATCAAGGCACTTTCAATTACGAGGAGCTATCTAGAGCCACCAATGGCTTCT 277
Query 539 CTGAGGCCAATTTGTTAGGAGAGGGTGGATTT-GGATTCGTATACAAAGGTATATTGAAT 597
||||||||||||| |||||| | ||||| ||| || | ||| | |||||||| ||| |
Sbjct 278 CTGAGGCCAATTTATTAGGACAAGGTGG-TTTCGGCTACGTTTTTAAAGGTATGTTGCGT 336
Query 598 AATGGAAATGAAGTTGCAGTTAAACAGTTGAAAGTAGGGAGTGCTCAGGGTGAGAAAGAG 657
|||||||| |||||||| || ||||||||||||| ||||||| |||| || |||| ||||
Sbjct 337 AATGGAAAAGAAGTTGCTGTAAAACAGTTGAAAGAAGGGAGTTCTCAAGGAGAGAGAGAG 396
Query 658 TTTCAGGCTGAGGTTAATATTATTAGCCAAATTCACCATAGGA-ATTTGGTTTCCCTTGT 716
||||| || |||||| || ||||||| | ||||||||| || ||||||| |||||
Sbjct 397 TTTCAAGCAGAGGTTGGGATCATTAGCCGAGTTCACCATA-GACATTTGGTGGGACTTGT 455
Query 717 CGGTTATTGCATCGCTGGTGCTCAAAGATTGCTTGTCTATGAGTTTGTTCCCAACAACAC 776
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 GGGTTATTGCATCGCCGATGCTCAAAGATTGCTTGTCTATGAGTTTGTTCCCAACAACAC 515
Query 777 TCTCGAGTTTCACCTCCATGGGAAAGGACGGCCTACGATGGAATGGAGTTTAAGATTAAA 836
|||||||||||||||||||||||| ||||| ||||| ||||||||||||| |||||| ||
Sbjct 516 TCTCGAGTTTCACCTCCATGGGAAGGGACGACCTACAATGGAATGGAGTTCAAGATTGAA 575
Query 837 GATTGCTGTCAGTTCTTCCAAAGGATTGTCTTATCTTCATGAAAATTGCAATCCTAAAAT 896
|||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 GATTGCGGTTGGTTCTGCCAAAGGATTGTCTTATCTTCATGAAAATTGCAATCCTAAAAT 635
Query 897 CATCCACCGTGATATCAAGGCGGCAAACATATTGATTGATTTCAAATTTGAAGCAAAGGT 956
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 636 CATCCACCGTGATATCAAGGCGGCAAACATATTGATTGATTTCAAATTTGAAGCTAAGGT 695
Query 957 TGCTGATTTTGGTCTCGCCAAGATTGCTTTGGATACAAACACTCATGTATCTACACGTGT 1016
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 696 TGCTGATTTTGGTCTTGCCAAGATTGCTTCGGATACAAACACTCATGTATCTACACGTGT 755
Query 1017 TATGGGAACCTTTGGGTATTTGGCTCCGGAATATGCTGCAAGTGGAAAGCTTACTGAAAA 1076
|||||||| ||||||||||| ||||| ||||||||| |||| ||||| || || |||||
Sbjct 756 GATGGGAACTTTTGGGTATTTAGCTCCCGAATATGCTTCAAGCGGAAAACTGACAGAAAA 815
Query 1077 GTCTGATGTTTACTCATTCGGCGTTGTACTTTTGGAGCTAATAACGGGACGTCGCCCTGT 1136
||||| |||| |||||| |||||||||||||||||||||||||| |||||||||||| |
Sbjct 816 ATCTGACGTTTTCTCATTTGGCGTTGTACTTTTGGAGCTAATAACCGGACGTCGCCCTAT 875
Query 1137 TGATGCAAACAATGTCTATGCGGATGACAGCTTGGTTGATTGGGCACGACCATTGCTTGT 1196
|||||||||||||||| |||| ||| ||||||||||||||||||||||||| ||||||
Sbjct 876 TGATGCAAACAATGTCCATGCAGATAACAGCTTGGTTGATTGGGCACGACCTTTGCTTA- 934
Query 1197 AC-AAGCA-CTTGAAGAAAGTAA-CTTTGAAGGTT-TGGCTGATATAAAGCTGAATAATG 1252
|| ||| | || ||| | || || |||||| || | ||| ||||| |||| |||||||||
Sbjct 935 ACCAAGTATCT-GAA-ATAGGAAACTTTGA-GGCTGTGGTTGATACAAAGTTGAATAATG 991
Query 1253 AGTATGATAGAGAAGAGATGGCTCGCATGGTTGCTTGTGCTGCAGCTTGTGTCCGCTATA 1312
|||||||| ||||||||||||| || ||||||||||||| ||||||||||| || | ||
Sbjct 992 AGTATGATCGAGAAGAGATGGCCCGTGTGGTTGCTTGTGCCGCAGCTTGTGTTCGGTCTA 1051
Query 1313 CAGCTCGCCGAAGACCTCGCATGGACCAGGTTGTGCGTGTGCTAGAAGGAAACATATCGC 1372
|||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1052 CAGCTCGCCGCAGACCTCGCATGGATCAGGTTGTGCGTGTACTAGAAGGAAACATATCGC 1111
Query 1373 CGTCAGATCTGAATCAAGGGATAACACCCGGTCACAGCAAT 1413
| | ||||||||| |||||||| ||||| ||||||||||||
Sbjct 1112 CTTTAGATCTGAACCAAGGGATCACACCAGGTCACAGCAAT 1152
> Ahg479967 jgi|Araly1|479967|fgenesh2_kg.3__2668__AT3G24550.1
Length=2274
Score = 878 bits (475), Expect = 0.0
Identities = 790/939 (84%), Gaps = 34/939 (4%)
Strand=Plus/Plus
Query 491 AAAGCACTTTCACTTACGGGGAGCTAG-CTAGAGCCACCAATAAATTCTCTGAGGCCAAT 549
|||||||||||||||| | |||||| | | ||||| || ||| ||||||||||| |||
Sbjct 938 AAAGCACTTTCACTTATGAGGAGCT-GTCAAGAGCTACTAATGGCTTCTCTGAGGCTAAT 996
Query 550 TTGTTAGGAGAGGGTGGATTTGGATT-CGTATACAAAGGTATATTGAATAAT-GGAAATG 607
||||| ||| | || || ||||| || || | |||||||||||| || | ||||| |
Sbjct 997 TTGTTGGGACAAGGCGGGTTTGG-TTATGTGCATAAAGGTATATTGCCTAGTGGGAAA-G 1054
Query 608 AAGTTGCAGTTAAACAGTTGAAAG-TAGGGAGTGCTCAGGGTGAGAAAGAGTTTCAGGCT 666
||||||| || ||||||||||||| | || |||| |||||| |||| |||||||||||||
Sbjct 1055 AAGTTGCTGTGAAACAGTTGAAAGCT-GGAAGTGGTCAGGGAGAGAGAGAGTTTCAGGCT 1113
Query 667 GAGGTTAATATTATTAGCCA-AATTCACCATAGGAATTTGGTTTCCCTTGTCGGTTATTG 725
||||| | |||||||| || | |||| || ||| |||||||||| ||| | ||||||||
Sbjct 1114 GAGGTCGAGATTATTAG-CAGAGTTCATCACAGGCATTTGGTTTCTCTTATTGGTTATTG 1172
Query 726 CATCGCTGGTGCTCAAAGATTGCTTGTCTATGAGTTTGTTCCCAACAACACTCTCGAGTT 785
|| || |||| ||| ||||||||||||||||||||||| |||||||||| ||| |||||
Sbjct 1173 TATGGCCGGTGTTCAGAGATTGCTTGTCTATGAGTTTGTCCCCAACAACAATCTTGAGTT 1232
Query 786 TCACCTCCATGGGAAAGGACGGCCTACGATGGAATGGAGT-TTAAGATTAAAGATTGCTG 844
||||||||||||||| ||||| |||||||||||||||||| | ||||| |||||||||
Sbjct 1233 TCACCTCCATGGGAAGGGACGACCTACGATGGAATGGAGTACT-AGATTGAAGATTGCTC 1291
Query 845 TCAGTTCTTCCAAAGGA-TTGTCTTATCTTCATGAAAATTGCAATCCTAAAATCATCCAC 903
| | ||| | |||||| || || |||||||||||| | |||||||| |||||||| |||
Sbjct 1292 TTGGATCTGCTAAAGGACTT-TCATATCTTCATGAAGACTGCAATCCGAAAATCATTCAC 1350
Query 904 CGTGATATCAAGGCGGCAAACATA-TTGATTGATTTCAAATTTGAAGCAAAGGTTGCTGA 962
|||||||| ||||||||||| ||| ||| | |||||||| |||||||| |||||||||||
Sbjct 1351 CGTGATATTAAGGCGGCAAATATACTTG-TAGATTTCAAGTTTGAAGCTAAGGTTGCTGA 1409
Query 963 TTTTGGTCTCGCCAAGATTGCTT-TGGATACAAACACTCATGTATCTACACGTGTTATGG 1021
||||||||| ||||||||||||| | |||||||||||||||||||||||||| || ||||
Sbjct 1410 TTTTGGTCTTGCCAAGATTGCTTCT-GATACAAACACTCATGTATCTACACGCGTGATGG 1468
Query 1022 GAACCTTTGGGTATTTGGCTCCGGAATATGCTGCAAGTGGAAAGCTTACTGAAAAGTCTG 1081
|||||||||||||||||||||| |||||||||||||| |||||||| || ||||||||||
Sbjct 1469 GAACCTTTGGGTATTTGGCTCCAGAATATGCTGCAAGCGGAAAGCTCACAGAAAAGTCTG 1528
Query 1082 ATGTTTACTCATTCGGCGTTGTACTTTTGGAGCTAATAA-CGGGACGTCGCCCTGTTGAT 1140
| |||| |||||| || ||||||||||||||||| |||| ||||| | ||||||||||||
Sbjct 1529 ACGTTTTCTCATTTGGTGTTGTACTTTTGGAGCTTATAACCGGGA-GGCGCCCTGTTGAT 1587
Query 1141 GCAAACAATGTCTATGCGGATGACAGCTTGGTTGATTGGGCACGACCATTGCTTGTA-CA 1199
|||||||||||||||| ||||||||||| ||||| |||||||| || || ||| | |
Sbjct 1588 GCAAACAATGTCTATGTAGATGACAGCTTAGTTGACTGGGCACGTCCCTTACTT-AACCG 1646
Query 1200 AGCACT-TGAAGAAAGTA-ACTTTGAAGGTTTGGCTGATAT-AAAGCTGAATAATGAGTA 1256
|||| | || || ||| | | ||||| |||||||||||| | |||| || ||| |||||
Sbjct 1647 AGCA-TCTG-AGGAAGGAGATTTTGAGGGTTTGGCTGAT-TCAAAGATGGGTAACGAGTA 1703
Query 1257 TGATAGAGAAGAGATGGCTCGCATGGTTGCTTGTGCTGCAGCTTGTGTCCGCTATACAGC 1316
||| ||||| || ||||||||||||||||||||||||||||||||||| ||| || ||||
Sbjct 1704 TGACAGAGAGGAAATGGCTCGCATGGTTGCTTGTGCTGCAGCTTGTGTTCGCCATTCAGC 1763
Query 1317 TCGCCGAAGACCTCGCATG-GACCAGGTTGTGCGTGTGCT-AGAAGGAAACATATCGCCG 1374
|||||| |||||||||||| | |||| | || || | || ||||||||| |||||| |
Sbjct 1764 TCGCCGCAGACCTCGCATGAG-CCAGATAGTACGCGC-CTTAGAAGGAAATGTATCGCTG 1821
Query 1375 TCAGATCTGAATC-AAGGGATAACACCCGGTCACAGCAA 1412
|| ||||| || | ||||||| | ||| |||||||||||
Sbjct 1822 TCTGATCTTAA-CGAAGGGATGAGACCAGGTCACAGCAA 1859
> Ahg475678 jgi|Araly1|475678|fgenesh2_kg.2__808__AT3G24550.1
Length=2057
Score = 861 bits (466), Expect = 0.0
Identities = 796/950 (84%), Gaps = 44/950 (5%)
Strand=Plus/Plus
Query 491 AAAGCACTTTCACTTACGGGGAGCTAG-CTAGAGCCACCAATAAATTCTCTGAGGCCAAT 549
|||||||||||||||| | |||| | | | ||||| || ||| ||||||||||| |||
Sbjct 731 AAAGCACTTTCACTTATGAGGAG-TTGTCAAGAGCTACTAATGGCTTCTCTGAGGCTAAT 789
Query 550 TTGTTAGGAGAGGGTGGATTTGGATT-CGTATACAAAGGTATATTGAATAAT-GGAAATG 607
||||||||| | || || ||||| || || |||||||||||||| || | ||||| |
Sbjct 790 TTGTTAGGACAAGGCGGGTTTGG-TTATGTGCACAAAGGTATATTGCCTAGTGGGAAA-G 847
Query 608 AAGTTGCAGTTAAACAGTTGAAAG-TAGGGAGTGCTCAGGGTGAGAAAGAGTTTCAGGCT 666
||||||| || ||||||||||||| | ||||||| |||||| |||| |||||||||||||
Sbjct 848 AAGTTGCTGTGAAACAGTTGAAAGCT-GGGAGTGGTCAGGGAGAGAGAGAGTTTCAGGCT 906
Query 667 GAGGTTAATATTATTAGCCA-AATTCACCATAGGAATTTGGTTTCCCTTGTCGGTTATTG 725
||||| | |||||| | || | ||||||| ||| |||||||||| ||| ||||||||||
Sbjct 907 GAGGTCGAGATTATT-GGCAGAGTTCACCACAGGCATTTGGTTTCTCTTATCGGTTATTG 965
Query 726 CATCGCTGGTGCTCAAAGATTGCTTGTCTATGAGTTTGTTCCCAACAACACTCTCGAGTT 785
|| || ||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 966 TATGGCCGGTGCTCAACGATTGCTTGTCTATGAGTTTGTTCCCAACAACAATCTCGAGTT 1025
Query 786 TCACCTCCATGGGAAAGGACGGCCTACGATGGAATGGAGTT-TAAGATTAAAGATTGCTG 844
||||||||| ||||| ||| ||||||| ||||||||||| || |||| |||||||||
Sbjct 1026 TCACCTCCACGGGAAGGGAAGGCCTACAATGGAATGGAGCACTA-GATTGAAGATTGCTC 1084
Query 845 TCAGTTCTTCCAAAGGA-TTGTCTTATCTTCATGAA-A---AT-TGCAATCCTAAAATCA 898
| | ||| | |||||| || || |||||||||||| | || |||||||| |||||||
Sbjct 1085 TTGGATCTGCTAAAGGACTT-TCATATCTTCATGAAGATTTATGTGCAATCCGAAAATCA 1143
Query 899 TCCACCGTGATATCAAGGCGGCAAACATA-TTGATTGATTTCAAATTTGAAGCAAAG-GT 956
| ||||||||||| ||||| ||||| ||| || || |||||||||||| |||| ||| ||
Sbjct 1144 TTCACCGTGATATTAAGGCAGCAAATATACTT-ATGGATTTCAAATTTTAAGCTAAGTGT 1202
Query 957 T---G---CTGATTTTGGTCTCGCCAAGATTGCTTTGGATACAAACACTCATGTATCTAC 1010
| | |||| |||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1203 TTTTGTTGCTGACTTTGGTCTTGCCAAGATTGCTTCGGATACAAACACTCATGTATCTAC 1262
Query 1011 ACGTGTTATGGGAACCTTTGGGTATTTGGCTCCGGAATATGCTGCAAGTGGAAAGCTTAC 1070
||| | |||||||||||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 1263 ACGCCTGATGGGAACCTTTGGGTATTTGGCTCCAGAATATGCTGCAAGCGGAAAGCTCAC 1322
Query 1071 TGAAAAGTCTGATGTTTACTCATTCGGCGTTGTACTTTTGGAGCTAATAAC-GGGACG-T 1128
||||||||||| |||| |||||| |||||||||||||||||||| ||||| ||| || |
Sbjct 1323 AGAAAAGTCTGACGTTTTCTCATTTGGCGTTGTACTTTTGGAGCTTATAACCGGG-CGGT 1381
Query 1129 CGCCCTGTTGATGCAAACAATGTCTATGCGGATGACAGCTTGGTTGATTGGGCACGACCA 1188
||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 1382 -GCCCTGTTGATGCAAACAATGTCTATGTAGATGACAGCTTAGTTGACTGGGCACGACCT 1440
Query 1189 TTGCTTGTACA-AGCA-CTTGAAGAAAGTA-ACTTTGAAGGTTTGGCTGATAT-AAAGCT 1244
|||||| || |||| || || ||| | | | ||||| |||||||||||| | |||| |
Sbjct 1441 TTGCTTA-ACCGAGCATCT-GAGGAAGG-AGATTTTGAGGGTTTGGCTGAT-TCAAAGAT 1496
Query 1245 GAATAATGAGTATGATAGAGAAGAGATGGCTCGCATGGTTGCTTGTGCTGCAGCTTGTGT 1304
| ||| |||||||| | ||| ||||||||||| |||||||||||| |||||||||||||
Sbjct 1497 GGGTAACGAGTATGACAAAGAGGAGATGGCTCGTATGGTTGCTTGTACTGCAGCTTGTGT 1556
Query 1305 CCGCTATACAGCTCGCCGAAGACCTCGCATG-GACCAGGTTGTGCGTGTGCTAGAAGGAA 1363
||| || |||||||||| |||||||||||| | |||| ||||||||| | |||||||||
Sbjct 1557 TCGCCATTCAGCTCGCCGTAGACCTCGCATGAG-CCAGATTGTGCGTGCGTTAGAAGGAA 1615
Query 1364 ACATATCGCCGTCAGATCTGAATC-AAGGGATAACACCCGGTCACAGCAA 1412
| |||||| ||| ||||| || | ||||||| | ||| |||||||||||
Sbjct 1616 ATGTATCGCTGTCTGATCTTAA-CGAAGGGATGAGACCAGGTCACAGCAA 1664
> Ahg896748 jgi|Araly1|896748|Al_scaffold_0005_714
Length=300
Score = 145 bits (78), Expect = 1e-33
Identities = 188/236 (80%), Gaps = 27/236 (11%)
Strand=Plus/Plus
Query 1115 TAATAA-CGGGACGTCGCCCTGTTGATGCAAACAATGTCTATGCGGATGACAGC--T-TG 1170
|||||| ||||| | ||||||||||||||||||||||||||| | || | ||| | ||
Sbjct 74 TAATAATCGGGA-GGCGCCCTGTTGATGCAAACAATGTCTAT-C--AT-A-AGCTATGTG 127
Query 1171 -G-TTGAT--TGG-GCACG-A-C-CATTGCTTGTA-CAAGCACT-TGAAGAAAGTAACTT 1220
| ||||| ||| || | | | | |||||| | | |||| | || || ||| | ||
Sbjct 128 TGATTGATGGTGGAACAGGCACCGCCTTGCTT-AACCGAGCA-TCTG-AGGAAGGAGTTT 184
Query 1221 TGAAGGTTTGGCTGATAT-AAAGCTGAATAATGAGTATGATAGAGAAG-AGATGGCTCGC 1278
| | ||||||||||| || |||| || |||||||||||| |||| || | |||||||||
Sbjct 185 TCAGGGTTTGGCTGA-ATCAAAGATGGGTAATGAGTATGAAAGAG-AGTAAATGGCTCGC 242
Query 1279 ATGGTTGCTTGTGCTGCAGCTTGTGTCCGCTATACAGCTCGCCGAAGACCTCGCAT 1334
|||||||||||||||||||||||||| ||| || |||||||||| |||||||||||
Sbjct 243 ATGGTTGCTTGTGCTGCAGCTTGTGTTCGCCATTCAGCTCGCCGCAGACCTCGCAT 298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57287728480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5