BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24550.1
Length=2377
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479967 jgi|Araly1|479967|fgenesh2_kg.3__2668__AT3G24550.1 3293 0.0
Ahg475678 jgi|Araly1|475678|fgenesh2_kg.2__808__AT3G24550.1 2167 0.0
Ahg319144 jgi|Araly1|319144|fgenesh1_pm.C_scaffold_3002160 1029 0.0
Ahg905580 jgi|Araly1|905580|Al_scaffold_0003_2708 725 0.0
Ahg896748 jgi|Araly1|896748|Al_scaffold_0005_714 241 2e-62
> Ahg479967 jgi|Araly1|479967|fgenesh2_kg.3__2668__AT3G24550.1
Length=2274
Score = 3293 bits (1783), Expect = 0.0
Identities = 2089/2232 (94%), Gaps = 39/2232 (2%)
Strand=Plus/Plus
Query 1 CCATTGTCCAAATTCCTTATCaaaaaaaaaCTCTACTCTCGGTGGCACCAGATCActcct 60
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1 CCATTGTCCAAATTCCTTA-C--CAAAAAACTCTACTCTCGGTGGCACCAGATCACTCCT 57
Query 61 cctctctcttctcctacctttttcacattctcttcttc-t-tc-ttctcGTGAGAAAAAG 117
|||||||||||||||||||||||||||||||||||||| | || ||||| | | |
Sbjct 58 CCTCTCTCTTCTCCTACCTTTTTCACATTCTCTTCTTCTTCTCTTTCTC-T-CG----TG 111
Query 118 AAAGAGAGATTCTTTATTCATTAGATC---GAAGCAAAAATGTCCACAGCGCCGTCTCCA 174
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 112 AAAAAGAGATTCTTTATTCATTAGATCGAAGAAGCAAAAATGTCCACAGCGCCGTCTCCA 171
Query 175 GGCACTACTCCATCACCATCTCCACCGTctcctcccacaaactcgacaaccaccactcct 234
||||||||||||| || ||| ||||||||||||||||| |||||||||||||||
Sbjct 172 GGCACTACTCCAT---CA---CCA---TCTCCTCCCACAAACTCAACAACCACCACTCCT 222
Query 235 cctccagcagcctcttctcctcctcccaccacaactccttcttctcctcctccgtcgccg 294
||| | || | || ||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 223 CCT-C--CATCTTCCTCTCCTCCTCCCACCACAACTCCTTCTTCTCCTCCGCCGCCGCCG 279
Query 295 tcaactaattcaacctctcctcctccttcttctcctttacctccttctcttcctcctcca 354
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 280 TCAACTAATTCAACCACTCCTCCTCCTTCTTCTCCTTTACCTCCTTCTCTTCCTCCTCCA 339
Query 355 tctcctcctggatctttaactcctcctcttcctcaaccttccccctccgctcccatcact 414
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 340 TCTCCTCCTGGATCTTCCACTCCTCCTCTTCCTCAACCTTCTCCCTCCGCTCCCATCACT 399
Query 415 ccttctccaccgtctcccaccacACC---CTCAAACCCTCGAAGCCCTCCATCTCCTAAC 471
|| |||||||||||||| |||| || ||||||||||||||||||||||||||||||
Sbjct 400 CCATCTCCACCGTCTCCTTCCACTCCTGGATCAAACCCTCGAAGCCCTCCATCTCCTAAC 459
Query 472 CAAGGACCACCAAACACTCCCTCAGGATCTACTCCTAGAACTCCATCAAACACTAAACCG 531
||||||||||||||||||||||||||| |||||||| |||||||||| ||| |||| ||
Sbjct 460 CAAGGACCACCAAACACTCCCTCAGGACCTACTCCTCGAACTCCATCTAACGCTAATCCT 519
Query 532 TCGCCGCCGTCTGATTCTTCCGATGGATTGTCTACCGGAGTTGTGGTAGGAATCGCCATT 591
||||||||||||| ||||||||||||||| ||||| ||||| || || ||||||||||||
Sbjct 520 TCGCCGCCGTCTGGTTCTTCCGATGGATTATCTACAGGAGTGGTCGTTGGAATCGCCATT 579
Query 592 GGAGGAGTCGCTATTCTTGTTATACTGACTCTGATTTGTCTTCTCTGTAAGAAGAAACGA 651
|||||||| | | |||||| || |||||||||||||||||||||||||||||||||||
Sbjct 580 GGAGGAGTTGTTGCCCTTGTTGTATTGACTCTGATTTGTCTTCTCTGTAAGAAGAAACGA 639
Query 652 AGAAGAAGACACGACGATGAAGCTGCTTACTATGTTCCTCCT---CCTCCTCCATCTGGT 708
||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 640 AGAAGAAGACATGACGATGAAGCTGCTTACTATGTTCCTCCTCCACCTCCTCCTTCTGGT 699
Query 709 CCCAAAGCTGGAGGACCTTACGGTGGTCAACAACAGTATTGGCAACAACAAAACGCGTCA 768
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 700 CCCAAAGCTGGAGGACCTTACGGTGGACAACAACAGTATTGGCAACAACAAAACGCATCA 759
Query 769 CGGCCGTCAGATAATCATGTAGTGACGTCATTGccaccacctaagcctccatctccacca 828
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 CGACCGTCAGATAATCACGTAGTGACGTCATTGCCACCACCTAAGCCTCCATCTCCACCA 819
Query 829 cgaaaacctcctccgccacctccaccaccaGCATTCATGAGTAGCAGTGGTGGTTCTGAC 888
||||||||||| ||||| ||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 820 CGAAAACCTCCACCGCCTCCTCCACCACCGGCATTCATGAGCAGCAGTGGCGGTTCTGAC 879
Query 889 TATTCGGATCTTCCGGTTCTTCCTCCACCATCTCCAGGGCTTGTGTTAGGCTTTTCTAAA 948
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 880 TATTCGGATCTTCCGGTTCTTCCTCCACCATCTCCAGGGCTTGTGTTAGGATTTTCTAAA 939
Query 949 AGCACTTTCACTTATGAGGAGTTGTCGAGAGCTACTAATGGCTTCTCTGAGGCTAATTTG 1008
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 940 AGCACTTTCACTTATGAGGAGCTGTCAAGAGCTACTAATGGCTTCTCTGAGGCTAATTTG 999
Query 1009 TTAGGACAAGGAGGGTTTGGTTATGTGCATAAAGGTATATTGCCTAGTGGGAAAGAAGTT 1068
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 TTGGGACAAGGCGGGTTTGGTTATGTGCATAAAGGTATATTGCCTAGTGGGAAAGAAGTT 1059
Query 1069 GCTGTGAAACAGTTGAAAGCTGGTAGTGGTCAGGGAGAGAGAGAGTTTCAGGCTGAGGTT 1128
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1060 GCTGTGAAACAGTTGAAAGCTGGAAGTGGTCAGGGAGAGAGAGAGTTTCAGGCTGAGGTC 1119
Query 1129 GAGATCATTAGCAGAGTTCATCACAGGCATTTGGTTTCTCTTATTGGTTATTGTATGGCC 1188
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 GAGATTATTAGCAGAGTTCATCACAGGCATTTGGTTTCTCTTATTGGTTATTGTATGGCC 1179
Query 1189 GGTGTTCAAAGATTACTTGTCTATGAGTTTGTTCCAAACAACAATCTTGAGTTTCACCTC 1248
|||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1180 GGTGTTCAGAGATTGCTTGTCTATGAGTTTGTCCCCAACAACAATCTTGAGTTTCACCTC 1239
Query 1249 CATGGTAAGGGACGGCCTACGATGGAATGGAGTACTAGATTGAAGATTGCTCTTGGATCT 1308
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 CATGGGAAGGGACGACCTACGATGGAATGGAGTACTAGATTGAAGATTGCTCTTGGATCT 1299
Query 1309 GCTAAAGGACTTTCATATCTTCATGAAGATTGCAATCCGAAAATCATTCACCGTGATATT 1368
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1300 GCTAAAGGACTTTCATATCTTCATGAAGACTGCAATCCGAAAATCATTCACCGTGATATT 1359
Query 1369 AAGGCGTCAAACATA-TTGATTGATTTCAAATTTGAAGCTAAGGTTGCTGACTTTGGTCT 1427
|||||| |||| ||| ||| | |||||||| |||||||||||||||||||| ||||||||
Sbjct 1360 AAGGCGGCAAATATACTTG-TAGATTTCAAGTTTGAAGCTAAGGTTGCTGATTTTGGTCT 1418
Query 1428 TGCCAAGATTGCTTCTGATACAAACACTCATGTATCTACACGCGTGATGGGAACCTTTGG 1487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1419 TGCCAAGATTGCTTCTGATACAAACACTCATGTATCTACACGCGTGATGGGAACCTTTGG 1478
Query 1488 GTATTTGGCTCCGGAATATGCTGCAAGTGGAAAGCTCACAGAAAAGTCTGACGTTTTCTC 1547
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1479 GTATTTGGCTCCAGAATATGCTGCAAGCGGAAAGCTCACAGAAAAGTCTGACGTTTTCTC 1538
Query 1548 ATTTGGCGTTGTACTTTTGGAACTTATTACTGGGAGGCGCCCTGTTGATGCGAACAATGT 1607
|||||| |||||||||||||| ||||| || |||||||||||||||||||| ||||||||
Sbjct 1539 ATTTGGTGTTGTACTTTTGGAGCTTATAACCGGGAGGCGCCCTGTTGATGCAAACAATGT 1598
Query 1608 CTATGTAGATGACAGCTTAGTTGACTGGGCACGACCATTGCTTAACCGAGCATCTGAGGA 1667
||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 1599 CTATGTAGATGACAGCTTAGTTGACTGGGCACGTCCCTTACTTAACCGAGCATCTGAGGA 1658
Query 1668 AGGAGATTTTGAGGGTTTGGCTGATTCAAAGATGGGTAATGAGTATGACAGAGAGGAGAT 1727
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1659 AGGAGATTTTGAGGGTTTGGCTGATTCAAAGATGGGTAACGAGTATGACAGAGAGGAAAT 1718
Query 1728 GGCTCGCATGGTTGCTTGCGCTGCGGCTTGTGTTCGCCATTCAGCTCGCCGCAGACCTCG 1787
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1719 GGCTCGCATGGTTGCTTGTGCTGCAGCTTGTGTTCGCCATTCAGCTCGCCGCAGACCTCG 1778
Query 1788 CATGAGCCAGATAGTACGGGCGTTAGAAGGAAATGTATCGCTGTCTGATCTTAACGAAGG 1847
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1779 CATGAGCCAGATAGTACGCGCCTTAGAAGGAAATGTATCGCTGTCTGATCTTAACGAAGG 1838
Query 1848 GATGAGACCGGGTCACAGCAACGTATACAGCTCATATGGAGGAAGCACAGACTATGACAC 1907
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1839 GATGAGACCAGGTCACAGCAACGTCTACAGCTCATATGGAGGAAGCACAGACTATGACAC 1898
Query 1908 GAGCCAATACAACGACGACATGATAAAGTTTAGGAAAATGGCTCTTGGAACTCAAGAATA 1967
|||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||
Sbjct 1899 AAGCCAATACAACGACGACATGAAAAAGTTTAGGAAAATGGCACTAGGAACTCAAGAATA 1958
Query 1968 CGGCACAACCGGCGAGTACAGTAATCCAACCAGTGACTACGGACTGTACCCGTCTGGTTC 2027
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1959 CGGCACAACCGGCGAGTACAGTAATCCAACAAGTGACTACGGACTGTACCCATCTGGTTC 2018
Query 2028 AAGCAGTGAAGGTCAAGCCACACGAGAAATGGAGATGGGAAAGATTAAGAAAACCGGTCA 2087
||||| || ||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 2019 GAGCAGCGAGGGTCAAGCCACACGAGAAATGGAGATGGGGAAGATTAAAAAAACTGGTCA 2078
Query 2088 AGGTTATAGTGGACCCTCTCTTTAAACCATAAGAG-TGGAGAAA-TTGCAGGtttttttt 2145
||||||||||||||| ||||||||||||| ||||| || ||||| ||||||| |||||
Sbjct 2079 AGGTTATAGTGGACCTTCTCTTTAAACCACAAGAGATG-AGAAAATTGCAGGGGTTTTT- 2136
Query 2146 GGATTCTTTTTCTTATTAACTGTAAAGATTTGAGGAAATTGCCTTACTCTCTAATTGATT 2205
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2137 GGATTCTTTTTCTTATTAACTGTAAAGATTTGAGGAAATTGCCTTACTCTCTAATTGATC 2196
Query 2206 TACTACGATATA 2217
||||||||||||
Sbjct 2197 TACTACGATATA 2208
> Ahg475678 jgi|Araly1|475678|fgenesh2_kg.2__808__AT3G24550.1
Length=2057
Score = 2167 bits (1173), Expect = 0.0
Identities = 1522/1685 (90%), Gaps = 45/1685 (3%)
Strand=Plus/Plus
Query 334 cctccttct-c-tt-cctcctccatctcctcctggatctttaactcctcctcttcctcaa 390
||| ||||| | || ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 114 CCTTCTTCTCCTTTACCTCCTCCATCTCCTCCTGGATCTTCCACTCCTCCTCTTCCTCAA 173
Query 391 ccttccccctccgctcccatcactccttctccaccgtctcccaccacACCCTCAAAC-CC 449
||||| |||||| ||||||||||||| ||||| |||||||||||||| ||| | | |
Sbjct 174 CCTTCTCCCTCCACTCCCATCACTCCATCTCCGCCGTCTCCCACCAC-TCCTGGATCAAC 232
Query 450 TCGAAGCCCTCCATCTCCTAA-CCAAGGACCACCAAACACTCCC-TCAGGATC-TACTCC 506
| ||||||||||||||| || | |||||||||||| ||| ||| |||||| | ||||||
Sbjct 233 TAAAAGCCCTCCATCTCC-AAGCTAAGGACCACCAACCAC-CCCTTCAGGA-CTTACTCC 289
Query 507 TAGAACTCCATCAAACACTAAACCGTC-GCCGCCGTCTGATTCTTCCGATGGATTGTCTA 565
| |||||||||| ||| || || || | | | ||| |||||| | | | | |
Sbjct 290 TCGAACTCCATC-TACA--AACCCATCAGGGGGC-TCTTCTTCTTCTTCTCCCTCG-CCA 344
Query 566 CCGGAGTTGTGGTAGGAATCGCCATTGGAGGAGTCGCTATTCTTGTTATAC-TGACTCTG 624
|| ||||||| || ||||||||||||||||| |||||| | |||||| | | ||||| ||
Sbjct 345 CC-GAGTTGTTGTTGGAATCGCCATTGGAGGTGTCGCTGTGCTTGTT-TTCTTGACTTTG 402
Query 625 ATTTGTCTTCTCTGTAAGAAGAAACGAAGAAGAAGACACGACGATGAAGCTGCTTACTAT 684
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 403 ATTTGTCTTCTTTGTAAGAAGAAACGAAGAAGAAGACACGATGATGAAGCTGCTTACTAT 462
Query 685 GTTCCTCCTCCT---CCTCCAT-CTGGTCCCAAAGCTGGAGGACCTTACGGTGGTCAACA 740
|||||||||||| ||||| | ||||||||||||||||||||||||||||||| || ||
Sbjct 463 GTTCCTCCTCCTCCACCTCC-TCCTGGTCCCAAAGCTGGAGGACCTTACGGTGGACAGCA 521
Query 741 ACAGTATTGGCAACAACAAAACGCGTCACGGCCGTCAGATAATCATGTAGTGACGTCATT 800
|||||||||||||||||| || || |||| |||||||||||||| ||| || |||||||
Sbjct 522 ACAGTATTGGCAACAACAGAATGCATCACAACCGTCAGATAATCACGTAATGCCGTCATT 581
Query 801 G---ccaccacctaagcctccatctccaccacgaaaacctcctccgccacctccaccacc 857
| ||||||||||||||||| |||||||||||| ||||||| ||||| || ||||||||
Sbjct 582 GCCACCACCACCTAAGCCTCCTTCTCCACCACGACAACCTCCGCCGCCGCCACCACCACC 641
Query 858 aGCATTCATGAGTAGCAGTGGTGGTTCTGACTATTCGGATCTTCCGGTTCTTCCTCCACC 917
|||| |||||| |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 642 GGCATACATGAGCAGCAGTGGAAACTCTGACTATTCGGATCTTCCGGTTCTTCCTCCGCC 701
Query 918 ATCTCCAGGGCTTGTGTTAGGCTTTTCTAAAAGCACTTTCACTTATGAGGAGTTGTCGAG 977
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 702 GTCTCCAGGGCTTGTGTTAGGCTTTTCCAAAAGCACTTTCACTTATGAGGAGTTGTCAAG 761
Query 978 AGCTACTAATGGCTTCTCTGAGGCTAATTTGTTAGGACAAGGAGGGTTTGGTTATGTGCA 1037
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 762 AGCTACTAATGGCTTCTCTGAGGCTAATTTGTTAGGACAAGGCGGGTTTGGTTATGTGCA 821
Query 1038 TAAAGGTATATTGCCTAGTGGGAAAGAAGTTGCTGTGAAACAGTTGAAAGCTGGTAGTGG 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 822 CAAAGGTATATTGCCTAGTGGGAAAGAAGTTGCTGTGAAACAGTTGAAAGCTGGGAGTGG 881
Query 1098 TCAGGGAGAGAGAGAGTTTCAGGCTGAGGTTGAGATCATTAGCAGAGTTCATCACAGGCA 1157
|||||||||||||||||||||||||||||| ||||| ||| |||||||||| ||||||||
Sbjct 882 TCAGGGAGAGAGAGAGTTTCAGGCTGAGGTCGAGATTATTGGCAGAGTTCACCACAGGCA 941
Query 1158 TTTGGTTTCTCTTATTGGTTATTGTATGGCCGGTGTTCAAAGATTACTTGTCTATGAGTT 1217
||||||||||||||| ||||||||||||||||||| |||| |||| ||||||||||||||
Sbjct 942 TTTGGTTTCTCTTATCGGTTATTGTATGGCCGGTGCTCAACGATTGCTTGTCTATGAGTT 1001
Query 1218 TGTTCCAAACAACAATCTTGAGTTTCACCTCCATGGTAAGGGACGGCCTACGATGGAATG 1277
|||||| ||||||||||| |||||||||||||| || |||||| ||||||| ||||||||
Sbjct 1002 TGTTCCCAACAACAATCTCGAGTTTCACCTCCACGGGAAGGGAAGGCCTACAATGGAATG 1061
Query 1278 GAGTACTAGATTGAAGATTGCTCTTGGATCTGCTAAAGGACTTTCATATCTTCATGAAGA 1337
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 GAGCACTAGATTGAAGATTGCTCTTGGATCTGCTAAAGGACTTTCATATCTTCATGAAGA 1121
Query 1338 TT---G--CAATCCGAAAATCATTCACCGTGATATTAAGGC-GTCAAACATA-TTGATTG 1390
|| | ||||||||||||||||||||||||||||||||| | |||| ||| || || |
Sbjct 1122 TTTATGTGCAATCCGAAAATCATTCACCGTGATATTAAGGCAG-CAAATATACTT-ATGG 1179
Query 1391 ATTTCAAATTTGAAGCTAAG-GTT---G---CTGACTTTGGTCTTGCCAAGATTGCTTCT 1443
||||||||||| |||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 1180 ATTTCAAATTTTAAGCTAAGTGTTTTTGTTGCTGACTTTGGTCTTGCCAAGATTGCTTCG 1239
Query 1444 GATACAAACACTCATGTATCTACACGCGTGATGGGAACCTTTGGGTATTTGGCTCCGGAA 1503
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1240 GATACAAACACTCATGTATCTACACGCCTGATGGGAACCTTTGGGTATTTGGCTCCAGAA 1299
Query 1504 TATGCTGCAAGTGGAAAGCTCACAGAAAAGTCTGACGTTTTCTCATTTGGCGTTGTACTT 1563
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1300 TATGCTGCAAGCGGAAAGCTCACAGAAAAGTCTGACGTTTTCTCATTTGGCGTTGTACTT 1359
Query 1564 TTGGAACTTATTACTGGGAGGCGCCCTGTTGATGCGAACAATGTCTATGTAGATGACAGC 1623
||||| ||||| || ||| || ||||||||||||| ||||||||||||||||||||||||
Sbjct 1360 TTGGAGCTTATAACCGGGCGGTGCCCTGTTGATGCAAACAATGTCTATGTAGATGACAGC 1419
Query 1624 TTAGTTGACTGGGCACGACCATTGCTTAACCGAGCATCTGAGGAAGGAGATTTTGAGGGT 1683
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1420 TTAGTTGACTGGGCACGACCTTTGCTTAACCGAGCATCTGAGGAAGGAGATTTTGAGGGT 1479
Query 1684 TTGGCTGATTCAAAGATGGGTAATGAGTATGACAGAGAGGAGATGGCTCGCATGGTTGCT 1743
||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||
Sbjct 1480 TTGGCTGATTCAAAGATGGGTAACGAGTATGACAAAGAGGAGATGGCTCGTATGGTTGCT 1539
Query 1744 TGCGCTGCGGCTTGTGTTCGCCATTCAGCTCGCCGCAGACCTCGCATGAGCCAGATAGTA 1803
|| |||| |||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1540 TGTACTGCAGCTTGTGTTCGCCATTCAGCTCGCCGTAGACCTCGCATGAGCCAGATTGTG 1599
Query 1804 CGGGCGTTAGAAGGAAATGTATCGCTGTCTGATCTTAACGAAGGGATGAGACCGGGTCAC 1863
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1600 CGTGCGTTAGAAGGAAATGTATCGCTGTCTGATCTTAACGAAGGGATGAGACCAGGTCAC 1659
Query 1864 AGCAACGTATACAGCTCATATGGAGGAAGCACAGACTATGACACGAGCCAATACAACGAC 1923
|||||||| ||||| |||||||||||||||||||| || || ||||||||||||||||||
Sbjct 1660 AGCAACGTTTACAGTTCATATGGAGGAAGCACAGATTACGATACGAGCCAATACAACGAC 1719
Query 1924 GACATGATAAAGTTTAGGAAAATGGCTCTTGGAACTCAA-GAATACGGCACAACCGGCGA 1982
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1720 GACATGAAAAAGTTTAGGAAAATGGCTCTTGGAACTCAAAGAATACGGCACAACCGGCGA 1779
Query 1983 GTACA 1987
||||
Sbjct 1780 ATACA 1784
Score = 161 bits (87), Expect = 2e-38
Identities = 120/135 (89%), Gaps = 5/135 (4%)
Strand=Plus/Plus
Query 2177 GAGGAAATTGCCTTACTCTCTAATTGATTTACTACGATATATGATACGTTTAAAATTGTT 2236
||| ||||||||||||||||||||||| ||||||||||||||||| |||| || ||
Sbjct 1879 GAGAAAATTGCCTTACTCTCTAATTGACTTACTACGATATATGATTTGTTTTTTTTTTTT 1938
Query 2237 TTGCTTTGGTTTCTTCTTTAGATGTTGTGATGTTGATTGATTCTGGTTT-GAAtattatt 2295
||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1939 TTGGTTTGGTTTCTTCTTTAGATGTTGTGATGTTGATT----CTGGTTTTGAATATTATT 1994
Query 2296 ctttcattctttttt 2310
|||||||||||||||
Sbjct 1995 CTTTCATTCTTTTTT 2009
Score = 121 bits (65), Expect = 3e-26
Identities = 88/98 (90%), Gaps = 5/98 (5%)
Strand=Plus/Plus
Query 146 AAGCAAAAATGTCCACAGCGCCGTCTCCAGGCACTACTCCATCACCATCTCCACCGTctc 205
|||||||||| ||| | |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 19 AAGCAAAAATATCCTCGGCGCCGTCTCCAGGCACTACTCCATCACCATCTCCACCATCTC 78
Query 206 ctcc-ca--caaactc-gacaaccaccactcctcctcc 239
|||| | ||||||| | |||||||||||||||||||
Sbjct 79 CTCCTCCTTCAAACTCAG-CAACCACCACTCCTCCTCC 115
> Ahg319144 jgi|Araly1|319144|fgenesh1_pm.C_scaffold_3002160
Length=1362
Score = 1029 bits (557), Expect = 0.0
Identities = 903/1071 (84%), Gaps = 20/1071 (2%)
Strand=Plus/Plus
Query 904 GTTCTTCCTCCACCATCTCCAGGGCTTGTGTTAGGCTTTTCTAAAAGCACTTTCACTTAT 963
||||||||||||||||| |||||||||| |||||| | | | || ||||||||| |||
Sbjct 187 GTTCTTCCTCCACCATCACCAGGGCTTGCATTAGGCATCTATCAAGGCACTTTCAATTAC 246
Query 964 GAGGAGTTGTCGAGAGCTACTAATGGCTTCTCTGAGGCTAATTTGTTAGGACAAGGAGGG 1023
|||||| | || ||||| || ||||||||||||||||| ||||| ||||||||||| ||
Sbjct 247 GAGGAGCTATCTAGAGCCACCAATGGCTTCTCTGAGGCCAATTTATTAGGACAAGG-TGG 305
Query 1024 TTT-GGTTATGTGCATAAAGGTATATTGCCTAGTGGGAAAGAAGTTGCTGTGAAACAGTT 1082
||| || || || ||||||||| |||| || ||| |||||||||||||| ||||||||
Sbjct 306 TTTCGGCTACGTTTTTAAAGGTATGTTGCGTAATGGAAAAGAAGTTGCTGTAAAACAGTT 365
Query 1083 GAAAGCTGGTAGTGGTCAGGGAGAGAGAGAGTTTCAGGCTGAGGTTGAGATCATTAGCAG 1142
||||| || ||| ||| ||||||||||||||||| || ||||||| |||||||||| |
Sbjct 366 GAAAGAAGGGAGTTCTCAAGGAGAGAGAGAGTTTCAAGCAGAGGTTGGGATCATTAGCCG 425
Query 1143 AGTTCATCACAGGCATTTGGTTTCTCTTATTGGTTATTGTATGGCCGGTGTTCAAAGATT 1202
|||||| || || |||||||| ||| | |||||||| || |||| || |||||||||
Sbjct 426 AGTTCACCATAGACATTTGGTGGGACTTGTGGGTTATTGCATCGCCGATGCTCAAAGATT 485
Query 1203 ACTTGTCTATGAGTTTGTTCCAAACAACAATCTTGAGTTTCACCTCCATGGTAAGGGACG 1262
|||||||||||||||||||| ||||||| ||| ||||||||||||||||| ||||||||
Sbjct 486 GCTTGTCTATGAGTTTGTTCCCAACAACACTCTCGAGTTTCACCTCCATGGGAAGGGACG 545
Query 1263 GCCTACGATGGAATGGAGTACTAGATTGAAGATTGCTCTTGGATCTGCTAAAGGACTT-T 1321
||||| |||||||||||| | |||||||||||||| |||| ||||| |||||| || |
Sbjct 546 ACCTACAATGGAATGGAGTTCAAGATTGAAGATTGCGGTTGGTTCTGCCAAAGGA-TTGT 604
Query 1322 CATATCTTCATGAAGATTGCAATCCGAAAATCATTCACCGTGATATTAAGGCGTCAAACA 1381
| |||||||||||| |||||||||| |||||||| ||||||||||| |||||| ||||||
Sbjct 605 CTTATCTTCATGAAAATTGCAATCCTAAAATCATCCACCGTGATATCAAGGCGGCAAACA 664
Query 1382 TATTGATTGATTTCAAATTTGAAGCTAAGGTTGCTGACTTTGGTCTTGCCAAGATTGCTT 1441
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 665 TATTGATTGATTTCAAATTTGAAGCTAAGGTTGCTGATTTTGGTCTTGCCAAGATTGCTT 724
Query 1442 CTGATACAAACACTCATGTATCTACACGCGTGATGGGAACCTTTGGGTATTTGGCTCCGG 1501
| |||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| |
Sbjct 725 CGGATACAAACACTCATGTATCTACACGTGTGATGGGAACTTTTGGGTATTTAGCTCCCG 784
Query 1502 AATATGCTGCAAGTGGAAAGCTCACAGAAAAGTCTGACGTTTTCTCATTTGGCGTTGTAC 1561
|||||||| |||| ||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 785 AATATGCTTCAAGCGGAAAACTGACAGAAAAATCTGACGTTTTCTCATTTGGCGTTGTAC 844
Query 1562 TTTTGGAACTTATTACTGGGAGG-CGCCCTGTTGATGCGAACAATGTCTATGTAGATGAC 1620
||||||| || || || || | | |||||| ||||||| ||||||||| ||| |||| ||
Sbjct 845 TTTTGGAGCTAATAACCGG-ACGTCGCCCTATTGATGCAAACAATGTCCATGCAGATAAC 903
Query 1621 AGCTTAGTTGACTGGGCACGACCATTGCTTAACCGAGCATCTGAGGA-AGGAGATTTTGA 1679
||||| ||||| ||||||||||| |||||||||| || |||||| | |||| | |||||
Sbjct 904 AGCTTGGTTGATTGGGCACGACCTTTGCTTAACCAAGTATCTGAA-ATAGGAAACTTTGA 962
Query 1680 GGGTTTGGCTGATTCAAAGATGGGTAATGAGTATGA-CAGAGAGGAGATGGCTCGCATGG 1738
|| | ||| |||| ||||| || |||||||||||| | |||| |||||||| || |||
Sbjct 963 GGCTGTGGTTGATACAAAGTTGAATAATGAGTATGATC-GAGAAGAGATGGCCCGTGTGG 1021
Query 1739 TTGCTTGCGCTGCGGCTTGTGTTCGC-CATTCAGCTCGCCGCAGACCTCGCATG-AGCCA 1796
||||||| || || ||||||||||| | | ||||||||||||||||||||||| | | |
Sbjct 1022 TTGCTTGTGCCGCAGCTTGTGTTCGGTC-TACAGCTCGCCGCAGACCTCGCATGGATC-A 1079
Query 1797 GATAGTACGGGCGTTAGAAGGAAATGTATCGC-TGTCTGATCTTAACGAAGGGATGAGAC 1855
| | || || | |||||||||| |||||| | | ||||| ||| ||||||| | ||
Sbjct 1080 GGTTGTGCGTGTACTAGAAGGAAACATATCGCCTTTA-GATCTGAACCAAGGGATCACAC 1138
Query 1856 CGGGTCACAGCAACGTATACAGCTCATATGGAGGAAGCACAGACTATGACACGAGCCAAT 1915
| ||||||||||| || ||| |||||| |||||||||||| || |||||| ||||||||
Sbjct 1139 CAGGTCACAGCAATGTTTACGGCTCATCTGGAGGAAGCACGGATTATGACTCGAGCCAAG 1198
Query 1916 ACAACGACGACATGATAAAG-TTTAGGAAAATGGCTCTTG-GAACTCAAGA 1964
||| || | ||||| | || ||||||||||||| || | || |||||||
Sbjct 1199 ACAGTGAAGGCATGA-ACAGGTTTAGGAAAATGGGACTCGAGA-CTCAAGA 1247
> Ahg905580 jgi|Araly1|905580|Al_scaffold_0003_2708
Length=1326
Score = 725 bits (392), Expect = 0.0
Identities = 578/667 (87%), Gaps = 16/667 (2%)
Strand=Plus/Plus
Query 947 AAAGCACTTTCACTTATGAGGAG-TTGTCGAGA-GCTACTAATGGCTTCTCTGAGGCTAA 1004
|||| ||||||||||| | |||| | | | | | || || ||| ||||||||||| ||
Sbjct 395 AAAGAACTTTCACTTACGGGGAGCTCG-CTA-ATGCCACCAATAAATTCTCTGAGGCCAA 452
Query 1005 TTTGTTAGGACAAGGAGGGTTTGGTTATGTGCATAAAGGTATATTGCCTAGTGGGAAAGA 1064
||| |||||| | || || ||||| || || | |||||||||||| ||| ||| |||||
Sbjct 453 TTTTTTAGGAGAGGGCGGATTTGGATACGTATACAAAGGTATATTGACTAATGGAAAAGA 512
Query 1065 AGTTGCTGTGAAACAGTTGAAAGCTGGTAGTGGTCAGGGAGAGAGAGAGTTTCAGGCTGA 1124
|||||| ||||||||||||||||| || |||| |||||| | ||| ||||||||||||||
Sbjct 513 AGTTGCAGTGAAACAGTTGAAAGCAGGGAGTGCTCAGGGGGGGAGGGAGTTTCAGGCTGA 572
Query 1125 GGTTGAGATCATTAG-CAGAGTTCATCACAGGCATTTGGTTTCTCTTATTGGTTATTGTA 1183
|||| | || ||||| || | |||| ||||||||||||||||||||| |||||||||| |
Sbjct 573 GGTTAATATTATTAGCCA-AATTCACCACAGGCATTTGGTTTCTCTTGTTGGTTATTGCA 631
Query 1184 TGGCCGGTGTTCAAAGATTACTTGTCTATGAGTTTGTTCCAAACAACAATCTTGAGTTTC 1243
| ||||||| |||||| || |||||||||||||||||||| ||||||| ||| |||||||
Sbjct 632 TCGCCGGTGCTCAAAGGTTGCTTGTCTATGAGTTTGTTCCCAACAACACTCTCGAGTTTC 691
Query 1244 ACCTCCATGGTAAGGGACGGCCTACGATGGAATGGAGTACTAGATTGAAGATTGCTCTTG 1303
|||||||||| ||||||||||||||||||||||||||| | ||| ||||||||||| |||
Sbjct 692 ACCTCCATGGGAAGGGACGGCCTACGATGGAATGGAGTTCAAGAATGAAGATTGCTGTTG 751
Query 1304 GATCTGCTAAAGGACTT-TCAT-ATCTTCATGAAGATTGCAATCCGAAAATCATTCACCG 1361
| ||||| |||||| || || | ||||||||||| ||| |||||| |||||||| |||||
Sbjct 752 GTTCTGCCAAAGGA-TTGTC-TCATCTTCATGAAAATTACAATCCAAAAATCATCCACCG 809
Query 1362 TGATATTAAGGCGTCAAACATATTGATTGATTTCAAATTTGAAGCTAAGGTTGCTGACTT 1421
||| || |||||| ||||||||||||||||| ||||||||||||| || |||||||| ||
Sbjct 810 TGACATCAAGGCGGCAAACATATTGATTGATATCAAATTTGAAGCAAAAGTTGCTGATTT 869
Query 1422 TGGTCTTGCCAAGATTGCTTCT-GATACAAACACTCATGTATCTACACGCGTGATGGGAA 1480
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 870 TGGTCTTGCCAAGATTGCTT-TGGATACAAACACTCATGTATCTACACGCGTGATGGGAA 928
Query 1481 CCTTTGGGTATTTGGCTCCGGAATATGCTGCAAGTGGAAAGCTCACAGAAAAGTCTGACG 1540
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 929 CCTTTGGGTATTTTGCTCCAGAATATGCTGCAAGTGGAAAGCTCACAGAAAAGTCTGATG 988
Query 1541 TTTTCTCATTTGGCGTTGTACTTTTGGAACTTATTA-CTGGGAGG-CGCCCTGTTGATGC 1598
||| |||||| ||||||||||||||||| ||| || | || | | ||||||||||||||
Sbjct 989 TTTACTCATTCGGCGTTGTACTTTTGGAG-TTAATAACCGG-ACGTCGCCCTGTTGATGC 1046
Query 1599 GAACAAT 1605
||||||
Sbjct 1047 AAACAAT 1053
> Ahg896748 jgi|Araly1|896748|Al_scaffold_0005_714
Length=300
Score = 241 bits (130), Expect = 2e-62
Identities = 193/221 (87%), Gaps = 13/221 (6%)
Strand=Plus/Plus
Query 1579 GGGAGGCGCCCTGTTGATGCGAACAATGTCTAT-GT-AG--ATGACAGCTT-A--GTTG- 1630
|||||||||||||||||||| |||||||||||| | || ||| | || | || |
Sbjct 82 GGGAGGCGCCCTGTTGATGCAAACAATGTCTATCATAAGCTATGTGTGATTGATGGTGGA 141
Query 1631 ACTGGGCA-CGACCATTGCTTAACCGAGCATCTGAGGAAGGAGATTTTGAGGGTTTGGCT 1689
|| |||| || || |||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 142 AC-AGGCACCG-CC-TTGCTTAACCGAGCATCTGAGGAAGGAG-TTTTCAGGGTTTGGCT 197
Query 1690 GATTCAAAGATGGGTAATGAGTATGACAGAGAGGAGATGGCTCGCATGGTTGCTTGCGCT 1749
|| ||||||||||||||||||||||| |||||| | |||||||||||||||||||| |||
Sbjct 198 GAATCAAAGATGGGTAATGAGTATGAAAGAGAGTAAATGGCTCGCATGGTTGCTTGTGCT 257
Query 1750 GCGGCTTGTGTTCGCCATTCAGCTCGCCGCAGACCTCGCAT 1790
|| ||||||||||||||||||||||||||||||||||||||
Sbjct 258 GCAGCTTGTGTTCGCCATTCAGCTCGCCGCAGACCTCGCAT 298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89550165995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5