BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24560.2
Length=2123
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479968 jgi|Araly1|479968|fgenesh2_kg.3__2669__AT3G24560.2 2990 0.0
Ahg479971 jgi|Araly1|479971|fgenesh2_kg.3__2672__AT3G24570.1 143 6e-33
> Ahg479968 jgi|Araly1|479968|fgenesh2_kg.3__2669__AT3G24560.2
Length=2142
Score = 2990 bits (1619), Expect = 0.0
Identities = 1981/2152 (92%), Gaps = 39/2152 (2%)
Strand=Plus/Plus
Query 1 GAGTTCGCTCGTTCGTAAATGGCGCGAGGTCTGTCTCTATGCTCCAATGGAAGAAAGTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGTTCGCTCGTTCGTAAATGGCGCGAGGTCTGTCTCTATGCTCCAATGGAAGAAAGTCT 60
Query 61 TCGACTTTACTCTCAAACTCCATCCCTAGGGTTTCAATTTCCTTTTCTCCTAAAACCCTT 120
|||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 61 TCGACTTTACTCTCAATCTCCATCCCTAGGGTTTCATTTTCCTTTTCTCCGAAAACCCTT 120
Query 121 TTCACTTGTTCATATCCACTTCAATCCCGCCACCCAAAATTCTCACAACGATTGTTCTGT 180
||||| | ||||||||||| |||||| |||||||||||||||| | |||||||||||||
Sbjct 121 TTCACGTCTTCATATCCACATCAATCTCGCCACCCAAAATTCT--C-ACGATTGTTCTGT 177
Query 181 AATCACGCCTGTG-TCCCGGAGACTGTGGACGAAACGAGGTACAAGGAGCTTTTCAATAA 239
|| ||||| |||| |||| ||||| ||||||||||||| ||| || ||||||||||||||
Sbjct 178 AACCACGCATGTGTTCCC-GAGACGGTGGACGAAACGAAGTATAAAGAGCTTTTCAATAA 236
Query 240 GAGAATGGATATGGCAGGACTTAAACCTCACAACCGAATTGCTTTGGGAGTTTCAGGTGG 299
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 237 AAGAATGGCTATGGCAGGACTTAAACCTCACCACCGAATTGCTTTGGGAGTTTCAGGTGG 296
Query 300 TCCTGATAGTATGGCTCTTTGTGTTCTAACTGCAAAATGGAAAACTGAAGGATTAAGTTG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCCTGATAGTATGGCTCTTTGTGTTCTAACTGCAAAATGGAAAACTGAAGGATTAAGTTG 356
Query 360 TGTTAATAAGACAGATGGTTTTATTGATGGACTTGTTGCTATAGTTGTTGATCATGGATT 419
||| |||||| |||||||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 357 TGTCAATAAGTCAGATGGTTTCATTGATGGACTTGTCGCTATAGTTGTGGATCATGGATT 416
Query 420 AAGACAAGAGAGTAAAGATGAAGCTGAACTTGTCTGTTCTAGAGTTTCTCAAATGGGAAT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 417 AAGACAAGAGAGTAAAGATGAAGCTGAACTTGTCTGTTCTAGAGTTTCTCAAATGGGTAT 476
Query 480 CAGATGTGAGATTGCAAGTTGTGATTGGGTTGATGGTAGACCAAAGCTTGGCCACTTGCA 539
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 477 TAGATGTGAGATTGCAAGTTGTGATTGGGTTGATGGTAGACCAAAGCTTGGTCACTTGCA 536
Query 540 AGAAGCAGCTCGTGAAATGAGGTATGAGATGATTTCGAATGTGTGTTTTCGACAACAGAT 599
||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||
Sbjct 537 AGAAGCAGCTCGTGAAATGAGGTATCAGATGATTTCGAATGTTTGTTTTCGACATCAGAT 596
Query 600 TGAGGTCTTGCTTATAGCGCATCATGCAGATGACCAGGCTGAGTTATTCATTCTCAGGTT 659
||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 597 TGAGGTCTTACTTATAGCTCATCATGCCGATGACCAGGCTGAGTTATTCATTCTCAGGTT 656
Query 660 ATCTCGTAGTAGCGGTGTACTTGGTCTTGCGGGTACAGCTTTTGCTTCCGAGATTTTCTC 719
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 657 ATCTCGTAGTAGCGGTGTACTTGGTCTTGCAGGTACAGCTTTTGCTTCCGAGATTTTCTC 716
Query 720 CAGAAATCTGCAGTTAGATGCAAAACATATGAAGAACCAATCTATTCGCTTAGTGCGTCC 779
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 717 CAGAAATCTGCAGTTAGATGCAAAACATATGAAGAACCGATCTATTCTCTTAGTGCGTCC 776
Query 780 GCTACTAGATTTATGGAAAGAAGACATGTACAAGATATGTCAATGGGGTAGACAAGATTG 839
|||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 777 GCTATTAGAATTATGGAAAGAAGACATGTATAAGATATGTCAATGGGGTAGACAAGATTG 836
Query 840 GGTTGAAGATCCAACTAATCGTAGTCAGTTGTTTGTTCGGAATAGGATTCGAACATCAAT 899
|||||||||||| |||||||||||||| |||||||| ||||| ||||||||||| |||||
Sbjct 837 GGTTGAAGATCCGACTAATCGTAGTCAATTGTTTGTCCGGAACAGGATTCGAACGTCAAT 896
Query 900 AGGAAATCTAGAATCAGGTAGCTTCAAGTCAGAGCTGCAAGCAGTCATTTCTGAATGCAG 959
|||||||||| | ||||| | ||||||||||||||| || |||||||||||||||||| |
Sbjct 897 AGGAAATCTACATTCAGGCAACTTCAAGTCAGAGCTTCATGCAGTCATTTCTGAATGCCG 956
Query 960 GAGAACACGTTCATTTGTTGATAAAGTTTGTACAGACTTAATACA-TCAGACCGTAACAG 1018
|||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 957 AAGAACACGGTCATTTGTTGATAAAGTTTGTACAGACTTAATA-AGTCAGACCGTAACAG 1015
Query 1019 TGACAGATAAAGGGTATGCTATTCTTGATCTAGAGAGACTTAATCCTTCAGGAGTTAAAG 1078
|||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||
Sbjct 1016 TGACAGATAAAGGGTATGCTATTCTTGATCTAGAGAGACTAAATCCTACAGAAGTTAAAG 1075
Query 1079 ACATTTGCCTCTCAAAGTATCTCTTTGCGGTCCTGCAGTTTATCTCTCAACGGCAAAGAC 1138
||||||||||||||||||||||| ||| ||| |||||||||||||||||||||| ||||
Sbjct 1076 ACATTTGCCTCTCAAAGTATCTCGCTGCAGTCTTGCAGTTTATCTCTCAACGGCACAGAC 1135
Query 1139 CAATCAGAGGAAACACTTCAAAGTTGCTTTTGAACTATATCCGCGCAATTCCGTGCAGGA 1198
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 CAGTCAGAGGAAACACTTCAAAGTTGCTTTTGAACTATATCCGCGCAATTCCGTGCAGGA 1195
Query 1199 CATCTCTAACAGCTGCTGGTTGCTACCTTAGTCCTGCTCCAGGGTCGAAGGGTACCAAAA 1258
|||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||
Sbjct 1196 CATCTCTAACAGCTGCTGGTTGCTACCTTAGTCCCGCTCCTGGGTCCAAGGGTACCAAAA 1255
Query 1259 TTATAGTCTCATGTTCTGTTGACTGTCCTTTACCATCAAAGACAGAACTCTTGAACATTT 1318
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 TTATAGTTTCCTGTTCTGTTGACTGTCCTTTACCATCAAAGACAGAACTCTTGAACATTT 1315
Query 1319 CCTTCAATGAAACTC--------C--A-T-CTGATGACCTTGG-ACAAATCATAGCAGAC 1365
| |||||||| ||| | | | |||||||||| | | |||||||| |||||
Sbjct 1316 GCGTCAATGAAGCTCAGAAAAAACCGACTTCTGATGACCTCAGTA-AAATCATATCAGAC 1374
Query 1366 GCAAAATCGT-TTTCTGACCATGTGGCTCCAACCAGCTTGTTTGAAGTCCAGTTTCTGGA 1424
|||| ||| | |||| ||||||| ||| || | || |||||||||||||| ||| |||
Sbjct 1375 GCAACATC-TATTTCAGACCATGAGGCCCCGAGCAAATTGTTTGAAGTCCATTTTTTGGT 1433
Query 1425 TGTTGCATCTGAATCCGTATTGAGTAAAGCCAGAGAGCTCAATCTTCTCAGCGAATCGAC 1484
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1434 TGTTGCTTCTGAATCCGTTTTGAGTAAAGCCAGAGAGCTCAATCTTCTCAGCGAATCTAC 1493
Query 1485 GTATACAACCATTGGTCTACTGCAGAGGGATGAAACTAAACGGTTTTTAACTAAAACAGA 1544
||||||||||||||||||||||| ||| ||||||| || ||||| |||||||||||||
Sbjct 1494 CTATACAACCATTGGTCTACTGCAAAGGAATGAAACCAATCGGTTCATAACTAAAACAGA 1553
Query 1545 AGAGAAATCAGT-G--GAAT-TAGAGCATGGAACCAACATTGCAGCTTCCTCTGATAAAG 1600
|| ||||| || | |||| | ||||||||||||||||||||| |||||||||||||||
Sbjct 1554 TGACAAATCTGTAGATGAATCT-GAGCATGGAACCAACATTGCATCTTCCTCTGATAAAG 1612
Query 1601 TACATCTTTGTCTAGGGCAAAATCTCTACTTCATGAACCGTTTTCTCATCAGATGGAACC 1660
|||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1613 TACATCTTTGGCCAGGGCAAAATCTCTACTTCATGAACCGGTTTCTCATCAGATGGAACT 1672
Query 1661 TAAGTGACCACCAATGTAATGAAGCAGACTGCAGAAATTGTCCAGTGAGTACTGCTACAT 1720
| ||||||||||||||| ||||||| | |||| |||||||||||||||| || |||||||
Sbjct 1673 TGAGTGACCACCAATGTGATGAAGCTGGCTGCGGAAATTGTCCAGTGAGGACAGCTACAT 1732
Query 1721 CAATGGAGGTTCGGCACATGGTTGAACCCGACTGGTTATATCTAGCTGAGCTTTCAAAAT 1780
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1733 CAATGGAGGTTCGGCACATGGTTGAATCCGACTGGCTATATCTAGCTGAGCTTTCAAAAT 1792
Query 1781 GCTC-AACCTCAAATCATTCTATTTCATCCTCACAAAAAGCTCTCAGGTCCTTAAAGTTG 1839
|||| ||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1793 GCTCGAAC-TCAAACCATTCTATGTCATCCTCACAAAAAGCTCTCAGGTCCTTAAAGTTG 1851
Query 1840 ATCCCAGCCGCTGCAAGAAAAAGCCTTCCTGTCTTGGTCAATCACTGTGGATTACTACTC 1899
|||||||| ||||||||||||||||| || |||||| ||||||| || ||||||||||||
Sbjct 1852 ATCCCAGCTGCTGCAAGAAAAAGCCTCCCGGTCTTGATCAATCATTGCGGATTACTACTC 1911
Query 1900 TGCATACCAGCTATTGGCTTCAGTTATTGTTCATGCCTTGAGGCATCTGCAGTGTTTCTT 1959
| | || ||||||||||||| |||||| ||||||||||| |||||||||||||||||
Sbjct 1912 AGTGTTCCCGCTATTGGCTTCAACTATTGTCCATGCCTTGAGACATCTGCAGTGTTTCTT 1971
Query 1960 CCAAGAATACCACTCGGAGGCGGTCATAGCTCATTTCTCTAGTCTAGCCATATCATGTTG 2019
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1972 CCAAGAGTACCACTCGGAGGTGGTCATAGCTCATTTCTCTAGTCTAGCCATATCCTGTTT 2031
Query 2020 CATTCATTCAATA---C--T---AACAGACATTTATTCACTTGTACTGAATTCTCGTGAA 2071
||||||||||||| | | ||||||||||||||||||||||||||||||| |||||
Sbjct 2032 CATTCATTCAATATTTCAATTCTAACAGACATTTATTCACTTGTACTGAATTCTTGTGAA 2091
Query 2072 ACGAAATAATATTTGATTCAAGAATCTGTATCCTAGGCAACTTCCGTTATTG 2123
|| |||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 2092 ACAAAATAATATTTGAT-CAAGAATCTGTATCCTAGGCAACTTTCGTTATTG 2142
> Ahg479971 jgi|Araly1|479971|fgenesh2_kg.3__2672__AT3G24570.1
Length=934
Score = 143 bits (77), Expect = 6e-33
Identities = 90/96 (94%), Gaps = 1/96 (1%)
Strand=Plus/Minus
Query 2028 CAATACTAACAGACATTTATTCACTTGTACTGAATTCTCGTGAAACGAAATAATATTTGA 2087
|||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 934 CAATTCTAACAGACATTTATTCACTTGTACTGAATTCTTGTGAAACAAAATAATATTTGA 875
Query 2088 TTCAAGAATCTGTATCCTAGGCAACTTCCGTTATTG 2123
| ||||||||||||||||||||||||| | ||||||
Sbjct 874 T-CAAGAATCTGTATCCTAGGCAACTTTCATTATTG 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79875243765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5