BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24570.1
Length=989
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479971 jgi|Araly1|479971|fgenesh2_kg.3__2672__AT3G24570.1 1343 0.0
Ahg479968 jgi|Araly1|479968|fgenesh2_kg.3__2669__AT3G24560.2 148 6e-35
> Ahg479971 jgi|Araly1|479971|fgenesh2_kg.3__2672__AT3G24570.1
Length=934
Score = 1343 bits (727), Expect = 0.0
Identities = 906/983 (92%), Gaps = 50/983 (5%)
Strand=Plus/Plus
Query 8 CTGTATCAACCTCTTTCTTCTAACCAATCACAATCGCCTTCTTCCACGGCGGCTCTCCGT 67
|||| |||||||||||||| |||||||||||||||||||||||||||||||| | | | |
Sbjct 1 CTGTGTCAACCTCTTTCTTTTAACCAATCACAATCGCCTTCTTCCACGGCGG-T-T-C-T 56
Query 68 CACAGGTGACAGGTCCCAAtctctctctctcGCGGCGACGGCGAATACGGCTGGTACATA 127
| | || ||||||||||| ||| ||||||||||||| ||| |||||||||
Sbjct 57 C-C--GTCACAGGTCCCAA--------TCT--CGGCGACGGCGAAGACGACTGGTACATT 103
Query 128 ATGTTGAAGCTTTGGAGATGGTACCAGCGATGCCTGACGGTTCATCCTGTGAAAACTCAG 187
|||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 104 ATGTCGAAGCTTTGGAGATGGTATCAGCGATGCCTGACGGTTCATCCGGTGAAAACTCAG 163
Query 188 GTCATCAGTTCTGGATTTCTTTGGGGATTTGGCGATGTCACCGCTCAATACATCACTCAT 247
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 GTCATCAGTTCTGGATTTCTTTGGGGATTTGGCGATGTCACCGCTCAATACATCACTCAC 223
Query 248 TCCACTGCGAAACGTCGTCTTCTTCGTCTCACCGAAACAAATAAAGATGCTGACGCAGAT 307
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 TCCACTGCGAAACCTCGTCTTCTTCGTCTCACCGAAACAAATAAAGATGCTGACGCAGAT 283
Query 308 GCAGAAATT-AAGGTCAAGTGGAAGCAAGATGCAGAATTCAAAGTCAACTGGAAGCGAGT 366
|||||| || || ||||| ||||||| || | || | | ||| | | | || | |
Sbjct 284 GCAGAA-TTCAAAGTCAACTGGAAGCGAG-T--AGC-T--A---TCA-C-G-A-GC-A-T 327
Query 367 AGCTATCACGAGCATGTTTGGATTTGGTTTTGTCGGACCTGTTGGCCACTTCTGGTACGA 426
| | | | | |||||| ||| | |||||||||||||||||||||||||||||
Sbjct 328 -GTT-T---G-G---GTTTGG-TTT--T---GTCGGACCTGTTGGCCACTTCTGGTACGA 372
Query 427 AGGCTTGGATAAATTCATAAAACTGAAGCTTCGATATGTACCAAAGTCAACACGTTTTGT 486
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 AGGCCTGGATAAATTCATAAAACTGAAGCTTCGATATGTACCAAAGTCAACACGTTTTGT 432
Query 487 AGCTGCAAAAGTTGCAATGGATGGTCTTATCTTTGGACCTGTAGATCTACTGGTGTTCTT 546
|||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 433 AGCTGCCAAAGTTGCAATGGATGGTCTTATCTTTGGGCCTATAGATCTACTGGTGTTCTT 492
Query 547 CACATACATGGGATTCGCCACAGGAAAGAACACAGCTGAAGTGAAAGAAGGACTCAAGAG 606
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 493 CACATACATGGGATTCGCCACAGGTAAGAACACAGCTGAAGTGAAAGAAGGACTCAAGAG 552
Query 607 AGATTTTCTTCCGGCTCTAGCTCTTGAAGGCGGAGCATGGCCACTTCTTCAGATTGCAAA 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 AGATTTTCTTCCGGCTCTAGCTCTTGAAGGCGGAGCATGGCCACTTCTTCAGATTGCAAA 612
Query 667 CTTCAGATATGTTCCCGTGCAATACCAGTTGCTTTACGTCAACATCTTTTGCCTAGTAGA 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 CTTCAGATATGTTCCCGTGCAATACCAGTTGCTTTACGTCAACATCTTTTGCCTAGTAGA 672
Query 727 CAGTGCCTTCCTCTCATGGGTCGAGCAACAGAAGGACGCAGCTTGGAAGCAATGGTTTAC 786
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 673 CAGTGCCTTCCTCTCATGGGTCGAGCAACAAAAGGACGCAGCTTGGAAGCAATGGTTTAC 732
Query 787 TTCATCATTTCAACCATTAAAAGAACGAGGTGGCCAAGGCGGAGTATGATCGTTTTCCCT 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 TTCATCATTTCAACCATTAAAAGAACGAGGTGGCCAAGGCGGAGTATGATCGTTTTCCCT 792
Query 847 GTCATAAACTTTGAATGAAAACAAAAACGAGTGTAATTGGCGATTTTCAATAACGGAAGT 906
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 793 GTCATAAACTTTGAATGAAAACAAAAACGAGTGTAATTGGCGATTTTCAATAATGAAAGT 852
Query 907 TGCCTAGGATACAGATTCTTGAATCAAATATTATTTCGTTTCACGAGAATTCAGTACAAG 966
|||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||
Sbjct 853 TGCCTAGGATACAGATTCTTGA-TCAAATATTATTTTGTTTCACAAGAATTCAGTACAAG 911
Query 967 TGAATAAATGTCTGTTAGTATTG 989
|||||||||||||||||| ||||
Sbjct 912 TGAATAAATGTCTGTTAGAATTG 934
> Ahg479968 jgi|Araly1|479968|fgenesh2_kg.3__2669__AT3G24560.2
Length=2142
Score = 148 bits (80), Expect = 6e-35
Identities = 91/96 (95%), Gaps = 1/96 (1%)
Strand=Plus/Minus
Query 894 CAATAACGGAAGTTGCCTAGGATACAGATTCTTGAATCAAATATTATTTCGTTTCACGAG 953
|||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||| ||
Sbjct 2142 CAATAACGAAAGTTGCCTAGGATACAGATTCTTG-ATCAAATATTATTTTGTTTCACAAG 2084
Query 954 AATTCAGTACAAGTGAATAAATGTCTGTTAGTATTG 989
||||||||||||||||||||||||||||||| ||||
Sbjct 2083 AATTCAGTACAAGTGAATAAATGTCTGTTAGAATTG 2048
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36750491988
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5