BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24590.1
Length=1046
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479972 jgi|Araly1|479972|fgenesh2_kg.3__2673__AT3G24590.1 1522 0.0
> Ahg479972 jgi|Araly1|479972|fgenesh2_kg.3__2673__AT3G24590.1
Length=1027
Score = 1522 bits (824), Expect = 0.0
Identities = 971/1039 (93%), Gaps = 22/1039 (2%)
Strand=Plus/Plus
Query 18 AGTTGATGATGGTGATGATATCTCTTCACT-TCTCTACTCCGCCGCTAGCTTTTCTCAAA 76
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1 AGTTGATGATGGTGATGATATCTCTTCA-TCTCTCTACTCCGCCGCTAGCTTTTCTCAAA 59
Query 77 TCTGATTCCAATTCCAGA-TTTCTCAAGAACCCTAATCCTAATTTTATCCAATTCACCCC 135
||| ||||||||| ||| |||| ||| |||||||||||||||||| |||||||||| ||
Sbjct 60 TCTTCTTCCAATTCTAGATTTTC-CAACAACCCTAATCCTAATTTTGTCCAATTCACTCC 118
Query 136 AAAATCCCAACTTCTTTTC-CCCCAACGTCTCAATTTCAACACC-G-G-AACAAATTTAA 191
||||||||||||| ||||| || ||| |||||||||||||| | | |||||||||||
Sbjct 119 AAAATCCCAACTT-TTTTCTTGCCGTCGTTTCAATTTCAACACCGGAGTAACAAATTTAA 177
Query 192 ACCGGCGAACTCTGAGTTGCTATGGGATTAAGGATTCAAGTGAGACAACGAAGTCTGCGC 251
||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 178 ACCGGAGAAGTCTGAGTTGCTATGGGGTTAAGGATTCAAGTGAGACAACGAAGTCTGCAC 237
Query 252 CGTCATTAGACT-C--CGGCGACGGTGGCGGCGGAGATGGTGGTGATGATGATAAAGGTG 308
|||| ||||||| | ||||| ||||| |||||||||| |||||||||||| | ||||||
Sbjct 238 CGTCGTTAGACTCCGGCGGCGGCGGTGACGGCGGAGATAGTGGTGATGATGTTGAAGGTG 297
Query 309 AAGTGGAGGaaaaaaaCAGACTTTTTCCGGAATGGTTGGATTTTACCTCGGATGATGC-A 367
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct 298 AAGTGGAGGAAAAAAACAGGCTTTTTCCGGAATGGTTGGATTTTACATCGGATGATGCGA 357
Query 368 CAGACTGTGTTTGTGGCTATAGCTGTATCGTTGGCGTTTCGTTATTTTATCGCAGAACCA 427
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 358 -AGACTGTGTTTGTGGCTATAGCTGTATCGTTGGCGTTTCGTTATTTTATTGCAGAACCA 416
Query 428 AGATATATTCCTTCTTTGTCTATGTATCCTACTTTTGATGTTGGAGACAGATTAGTTGCA 487
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 AGATACATTCCTTCTTTGTCTATGTATCCTACTTTTGATGTTGGAGACAGATTAGTTGCA 476
Query 488 GAGAAGGTGAGTTATTATTTCAGGAAGCCTTGTGCAAATGATATTGTCATCTTTAAAAGT 547
|||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct 477 GAGAAGGTGAGTTATTATTTTAGGAAGCCTTGTGCAAATGATATTGTGATCTTCAAAAGT 536
Query 548 CCACCAGTTCTTCAGGAAGTTGGGTATACTGATGCCGATGTATTTATTAAACGGATTGTT 607
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 537 CCACCAGTTCTTCAGGAAGTTGGGTATACTGATGCGGATGTATTTATTAAACGGATTGTT 596
Query 608 GCCAAAGAAGGTGACCTTGTGGAGGTACATAATGGGAAACTGATGGTTAATGGTGTTGCT 667
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GCGAAAGAAGGTGACCTTGTGGAGGTACATAATGGGAAACTGATGGTTAATGGTGTTGCT 656
Query 668 AGGAATGAAAAATTCATCTTAGAGCCTCCTGGTTATGAAATGACACCAATTAGGGTACCG 727
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||
Sbjct 657 AGGAATGAAAAATTCATCTTAGAGCCTCCTGGATATGAAATGACACCATTTAGGGTTCCG 716
Query 728 GAAAATTCAGTCTTTGTGATGGGTGATAACCGGAATAACAGTTATGATTCGCACGTATGG 787
||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 717 GAAAATTCAGTATTTGTGATGGGTGACAACCGGAATAACAGTTATGATTCACACGTGTGG 776
Query 788 GGTCCTCTGCCTTTGAAGAATATTATTGGACGGTCGGTTTTTCGGTATTGGCCACCAAAC 847
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 777 GGTCCTCTGCCTTTGAAGAATATTATTGGACGGTCAGTTTTTCGGTATTGGCCACCAAAC 836
Query 848 AGAGTAAGCGGGACAGTGCTAGAAGGTGGCTGTGCTGTGGATAAGCAATAGAACATATTG 907
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 837 AGAGTAAGCGGGACAGTGCTAGAAGGTGGCTGTGCAGTGGATAAGCAATAGAACATATTG 896
Query 908 TAACGTTTTGATTCGGCATGTCTTCATTTGAAACACTTGTGCAGATAAAAACGAAAACAA 967
||||||||||||| | || | ||| ||||||||||||||||||||| ||||||||
Sbjct 897 GAACGTTTTGATTC----T-TCCT--TTT-AAACACTTGTGCAGATAAAAATGAAAACAA 948
Query 968 TGTACCTTTTTATGAAGGAGAGAGTTGCACATTTGAATTAGATTGCAGATTAATGAGGAA 1027
||||||||| ||||||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 949 TGTACCTTTCTATGAAGGAGAGAGTTGCACATTTGAATTGGACTGCAGATTAATGAGAAA 1008
Query 1028 ACAAGAAATTCTTATTTGC 1046
|||||||||||||||||||
Sbjct 1009 ACAAGAAATTCTTATTTGC 1027
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38923498257
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5