BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24600.1
Length=1521
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319165 jgi|Araly1|319165|fgenesh1_pm.C_scaffold_3002181 2246 0.0
> Ahg319165 jgi|Araly1|319165|fgenesh1_pm.C_scaffold_3002181
Length=1524
Score = 2246 bits (1216), Expect = 0.0
Identities = 1425/1527 (93%), Gaps = 9/1527 (1%)
Strand=Plus/Plus
Query 1 ATGAAGATGTACCCAAAATCTGACTCAGACGTCACAAGCCTCGACCTATCATCACCAAAA 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGAAGATGTACCCAAAATCTGACTCAGACATCACAAGCCTCGACCTATCATCACCAAAA 60
Query 61 CGTCCTACTTACTACGTTCAAAGCCCATCACGTGACTCCGACAAGTCTTCCTCGGTGGCA 120
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 CTTCCTACTTACTACGTTCAAAGCCCATCACGTGACTCCGACAAGTCTTCTTCGGTGGCA 120
Query 121 CTGACTACTCATCAAACCACTCCCACAGAGTCGCCGTCACACCCATCAATTGCTAGCCGG 180
||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 121 CTGACGACTCATCAGACCACTCCCACCGAGTCGCCATCACACCCATCGTTTGCTAGCCGC 180
Query 181 GTATCCAATGGCGGTGGTGGCGGTTTCCGGTGGAAGGGACGGAGGAAATATCACGGCGGG 240
|||||||| ||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 181 GTATCCAACAACGGTGGTGGAGGTTTCCGGTGGAAAGGACGGAGGAAATATCACGGTGGA 240
Query 241 ATATGGTGGCCGGCTGATAAGGAGGA--A-GGTGGTGATGGACGGTACGAGGATCTTTAT 297
| |||||||||||||||||||||||| | | || |||||||||||||||||||||||||
Sbjct 241 AGATGGTGGCCGGCTGATAAGGAGGATGATGCTGATGATGGACGGTACGAGGATCTTTAT 300
Query 298 GAGGACAACAGAGGAGTCTCCATTGTTACTTGTAGACTTATTTTGGGAGTTGTTGCGACA 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAGGACAACAGAGGAGTCTCCATTGTTACTTGTAGACTTATTTTGGGAGTTGTTGCGACA 360
Query 358 TTGAGTATCTTTTTTCTTCTTTGTTCTGTTCTCTTTGGTGCTTCTCAATCTTCTCC-TCC 416
|||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||| |||
Sbjct 361 TTGAGTATCTTTTTTCTTCTATGTTCTGTTCTCTTTGGTGTTTCTCAATCTT-TCCCTCC 419
Query 417 AATCGTCTACATCAAGGGTGTGAATGTG-AGAAGTTTTTACTACGGAGAAGGTTCAGACA 475
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
Sbjct 420 AATCGTCTACATCAAGGGTGTGAATGTGCA-AAGTTTTTACTACGGAGAAGGTTCAGATA 478
Query 476 ATACAGGAGTTCCAACAAAGATCATGAACGTTAAATGTTCAGTGGTGATCACAACACACA 535
||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 479 GTACAGGAGTGCCAACAAAGATCATGAACTTTAAATGTTCAGTGGACATCACAACACACA 538
Query 536 ATCCTTCTACATTATTCGGCATCCATGTTAGCTCCACTGCCGTCAGCCTCATATACTCTC 595
|||||||||||||||||||||| ||||| ||||||||| || ||| |||| | |||||||
Sbjct 539 ATCCTTCTACATTATTCGGCATTCATGTCAGCTCCACTACCATCAACCTCGTCTACTCTC 598
Query 596 GTCAATTCACACTTGCGAAT-GCGCGGCTGAAGAGTTATCACCAACCAAAACAAAGCAAC 654
|||||||||| ||||||| | |||| ||||||||||||| | |||||||||| |||||||
Sbjct 599 GTCAATTCACGCTTGCGA-TCGCGCAGCTGAAGAGTTATTATCAACCAAAACTAAGCAAC 657
Query 655 CACACATCTAGGATCAACCTTATTGGCTCCAAGGTTCCACTATATGGAGCAGGAGCCGAG 714
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 658 CACACATCTAGGATCAACCTTGTTGGCTCCAAGGTTCCACTATATGGAGCAGGAGCCGAG 717
Query 715 TTAGTTGCTTCGGACAACAGTGGTGGAGTTCCCGTTCATACCCCAAACTACACCATTCTC 774
||||||||||| ||| | | |||||||||||| |||||||| ||||||||||||||||||
Sbjct 718 TTAGTTGCTTCAGACCATATTGGTGGAGTTCCTGTTCATACTCCAAACTACACCATTCTC 777
Query 775 AGTGAGTCACGTCTCTCCTCTTCGAGCCGTACCTCTAATGGGACAAGCGGTATGGGATTT 834
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 778 AGTGAGTCACGTCTCTCCTCTTCGAGCCGTACCTCCAATGGAACAAGCGGTATGGGATTC 837
Query 835 CGATGGAAAGGAAGCTCCCGGAGGAGTAATATGTATTGGCCGGAGAAGCCATACACGATT 894
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 838 CGATGGAAAGGAAGCTCCCGGAGAAGTAATATGTATTGGCCGGAGAAGCCTTACACGATT 897
Query 895 AATGAAGATGAGGTTTATGATGATAACAGAGGATTATCAGTGGGACAATGTAGAGCGGTT 954
||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 898 AATGAAGATGAAGTTTATGATGATAACAGAGGATTATCGGTGGGACAATGCAGAGCTGTT 957
Query 955 TTGGTAATATTAGGTACTGTGGTTGTGTTCTCTGTTTTTTGCTCTGTTTTGTGGGGAGCT 1014
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 958 TTGGTAATATTAGGTACTGTGGTTGTGTTCTCTGTTTTCTGCTCTGTTTTGTGGGGAGCT 1017
Query 1015 TCTCATCCTTTCTCTCCTATCGTCTCCGTTAAGAGCGTTGACATCCATAGCTTCTATTAC 1074
|||||||||||||||||||| ||||| || |||||| || ||||||||||||| ||||||
Sbjct 1018 TCTCATCCTTTCTCTCCTATTGTCTCTGTCAAGAGCTTTAACATCCATAGCTTTTATTAC 1077
Query 1075 GGAGAAGGAATAGACAGAACAGGAGTCGCCACCAAGATTCTAAGCTTTAACAGTTCAGTG 1134
|||||||||||||||||||||||||| || ||||||||||| ||||||||||| || |||
Sbjct 1078 GGAGAAGGAATAGACAGAACAGGAGTTGCTACCAAGATTCTGAGCTTTAACAGCTCGGTG 1137
Query 1135 AAGGTGACAATAGACAGTCCTGCTCCTTACTTTGGCATCCATGTCTCTTCTTCTACCTTC 1194
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1138 AAGGTGACAATAGATAGTCCTGCGCCTTACTTTGGCATCCATGTCTCTTCTTCTACCTTC 1197
Query 1195 AAACTCACTTTCTCTGCTCTCACACTCGCCACTGGTCAGCTAAAGAGCTATTACCAACCA 1254
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1198 AAACTCACCTTCTCTGCTCTCACACTCGCCACTGGTCAGCTTAAGAGCTATTACCAGCCA 1257
Query 1255 AGAAAGAGTAAGCACATATCAATTGTAAAGCTCACTGGCGCAGAGGTTCCTCTGTATGGA 1314
|||||||| ||||||||| | |||||||||||||||||||| || |||||| ||||||||
Sbjct 1258 AGAAAGAGCAAGCACATAGCCATTGTAAAGCTCACTGGCGCCGAAGTTCCTTTGTATGGA 1317
Query 1315 GCAGGACCACACTTAGCAGCTTCCGACAAGAAGGGTAAAGTTCCAGTGAAGCTGGAGTTT 1374
||||||||||||||||| || || ||||||||||| ||||||||||||||| ||||||||
Sbjct 1318 GCAGGACCACACTTAGCTGCCTCTGACAAGAAGGGAAAAGTTCCAGTGAAGTTGGAGTTT 1377
Query 1375 GAGATCAGATCAAGAGGTAATCTATTGGGGAAGCTAGTCAAGTCGAAGCACGAGAATCAC 1434
|||||| |||| |||||||| ||||||||||||| |||||||||||||||| |||||||
Sbjct 1378 GAGATCCGATCGCGAGGTAATTTATTGGGGAAGCTGGTCAAGTCGAAGCACGTGAATCAC 1437
Query 1435 GTATCATGCTCTTTCTTCATCTCCTCCTCCAAGACTTCCAAACCCATAGAATTCACTCAC 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1438 GTATCATGCTCTTTCTTCATCTCCTCCTCCAAGACTTCCAAACCCATAGAATTCAGTCAT 1497
Query 1495 AAGACCTGTAAACTCGTTACCAAGTAA 1521
|||||||||||||| ||||||||||||
Sbjct 1498 AAGACCTGTAAACTTGTTACCAAGTAA 1524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56944916275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5