BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24610.1
Length=1338
Score E
Sequences producing significant alignments: (Bits) Value
Ahg342629 jgi|Araly1|342629|fgenesh1_pg.C_scaffold_3002392 769 0.0
> Ahg342629 jgi|Araly1|342629|fgenesh1_pg.C_scaffold_3002392
Length=1245
Score = 769 bits (416), Expect = 0.0
Identities = 556/622 (89%), Gaps = 15/622 (2%)
Strand=Plus/Plus
Query 724 CCAGTGCG-GGAAGAAAAGATATACGTGGTGGATTCATGGGATGTTGGAAGCTATTACTA 782
|||||| | ||| || ||||| ||||||||| |||||||||||| |||||||| ||||||
Sbjct 607 CCAGTG-GTGGAGGAGAAGATTTACGTGGTGAATTCATGGGATGATGGAAGCTTTTACTA 665
Query 783 CTTGCCGAGCAAGAGTATATGGGAAAAAGGGAATCAAGATTCAAAGCGTAGCAAGGATTG 842
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 CTTGCCGAGCCAGAGTAAATGGGAAAAAGGGAATCAAGATTCAAAGCGTAGCAAGGATTG 725
Query 843 GTGTCTAATAGATAAGTTGATATATAGTTGTGGTAACGATGGAGGTATATATTGGTGTGA 902
|||||||||||||||||||||||| |||| ||||||||| || |||||||||||||||||
Sbjct 726 GTGTCTAATAGATAAGTTGATATACAGTTATGGTAACGACGGGGGTATATATTGGTGTGA 785
Query 903 GGCAGGGGAGTTGGATTGGTGTGACGCAGT-AGGGATAGATTGGAGGGAAGTGTTTGGTT 961
|||||||||||| ||||||||||| ||||| | | || ||||||||||| ||||| ||||
Sbjct 786 GGCAGGGGAGTTAGATTGGTGTGATGCAGTGAAG-ATTGATTGGAGGGAGGTGTTGGGTT 844
Query 962 TGGAGTTTCTGTCAAAGGAGCTCCGTGAATCGAGAGTGGTCTACTTTGGTGGGAAAATGG 1021
|||||||| |||||| || ||||||||| ||||| ||||| |||||||||||||||||||
Sbjct 845 TGGAGTTTTTGTCAATGGCGCTCCGTGATTCGAGTGTGGTATACTTTGGTGGGAAAATGG 904
Query 1022 TGAAAGTGTGGGAGTCCTACAAGATCATGTACAATATTAGCTTAAACCTTGAAGAATTAC 1081
| ||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||
Sbjct 905 TAAAAGTGTGGGAGTCCTATAAGATCATGTACAATATCAGCAAAAACCTTGAAGAATTAC 964
Query 1082 TTCCCGAGACCCA-ATTGACCAACTTGACCGAAC-TTGGTCATAATGTTTTGGTCTTTTG 1139
||||||||||| | |||||||||||||| | ||| ||||| | |||||||||||||||||
Sbjct 965 TTCCCGAGACC-ATATTGACCAACTTGATC-AACCTTGGTAAGAATGTTTTGGTCTTTTG 1022
Query 1140 GGAAAAGCTCGAATGTTGTTGTGATGGTTTTAAGATCTTGGAGATTTGGTGTG--CGGAG 1197
||||||||||||| || || ||||| | | || | ||||||||||||||| |||||
Sbjct 1023 GGAAAAGCTCGAACGTGGTGGTGAT--TAC-ATGAGCATGGAGATTTGGTGTGTGCGGAG 1079
Query 1198 ATTTCGTTGGAAAGGTGGGAGGGAGGCGAGATTTTGGGG-AGGTGTGATTGGTGCCATCC 1256
||||||||||||| |||||| |||||| |||||| |||| ||||||||||||||||||||
Sbjct 1080 ATTTCGTTGGAAAAGTGGGAAGGAGGCCAGATTT-GGGGCAGGTGTGATTGGTGCCATCC 1138
Query 1257 TATCCTCGCAATCAATCTTCTCACGGTCGATCCTCTCTTCTACCACTCTATGGTCTTGTA 1316
||||||||||||| ||||||||||| | ||||||||||| | ||||| || |||||||||
Sbjct 1139 TATCCTCGCAATCGATCTTCTCACGATTGATCCTCTCTTGTGCCACTTTAAGGTCTTGTA 1198
Query 1317 TTCTATCCCTGTTGATGTTTGA 1338
||||||||||||||| ||||||
Sbjct 1199 TTCTATCCCTGTTGACGTTTGA 1220
Score = 348 bits (188), Expect = 7e-95
Identities = 227/246 (92%), Gaps = 2/246 (1%)
Strand=Plus/Plus
Query 313 ATGTCCAATGAGGCTCCCGAAGTGG-AACCACATAGTAAGAGGAGGAAGAAAGAGGCATC 371
|||||||| || ||||||||||||| || |||||| ||||||||||||||||||||||||
Sbjct 1 ATGTCCAAAGACGCTCCCGAAGTGGCAA-CACATAATAAGAGGAGGAAGAAAGAGGCATC 59
Query 372 TCCGTCGTCATCTTCAGGGTTTCTACAATCTTTGCCAGAAGCGGTGGCTATGATTTGCTT 431
| |||||||||| ||| |||||||||| ||||||||||||||||||||||| | ||||||
Sbjct 60 TTCGTCGTCATCGTCAAGGTTTCTACATTCTTTGCCAGAAGCGGTGGCTATAAGTTGCTT 119
Query 432 GGCCCGCGTATCAAGATTGGACCATGCAGCCTTATCTCTCGTCTCCAAGAGCTGCCGGTC 491
||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 120 AGCCTGCGTATCAAGATTGGACCATGCAGCCTTATCTCTCGTCTCCAAGACCTGCCGGTC 179
Query 492 AATGGTTCTTTCACCCGAGCTCTACCAGACACGATCGTTGATAGGTTACGCTGAGAAGTT 551
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 180 AATGGTTCTTTCGTCCGAGCTCTACCAGACACGATCGTTGACGGGTTACGCTGAGAAATT 239
Query 552 CCTCTA 557
||||||
Sbjct 240 CCTCTA 245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50055390021
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5