BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24620.1
Length=1572
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319167 jgi|Araly1|319167|fgenesh1_pm.C_scaffold_3002183 2536 0.0
> Ahg319167 jgi|Araly1|319167|fgenesh1_pm.C_scaffold_3002183
Length=1575
Score = 2536 bits (1373), Expect = 0.0
Identities = 1507/1573 (96%), Gaps = 3/1573 (0%)
Strand=Plus/Plus
Query 1 ATGGTTGCAGCGTTGGAACGAGGACTAAGCGCTTCCAAATCATTCAACTTTAAAAGAATG 60
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGTTGCAGCGTTGGAACGAAGACTAAGCGCTTCCAAATCATTCAACTTTAAAAGTATG 60
Query 61 TTTGATTCATCTTCGACGAAACAACAACAATCTCAAACTATTGTCGTGGAGAACGGAGAT 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 TTTGATTCATCTTCGACGAAACAACAACAATCTCAAACCATTGTCGTGGAGAACGGAGAT 120
Query 121 TCTCATATTGTCGAATCCAACACGCCTGAAAGCCAAAACTCCGACAGCTTCGTAGAAAGC 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTCATATTGTGGAATCCAACACGCCTGAAAGCCAAAACTCCGACAGCTTCGTAGAAAGC 180
Query 181 CCCGTAGAGAGCAGCCTTCCAATGATTTCCCCTCTTACTCGGCCAGGAAAAAGATCTGAG 240
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 181 CCCGTAGAGAGCAGCCTTCCAATAATTTCCCCTCTTACTCGGCCAGGAAAAAGATCCGAC 240
Query 241 AGACAACAAGCAGATATGGAGATGATGAAAGACAGGTTCGCTAAATTGCTTCTTGGAGAA 300
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 241 AGACAACAAGCAGATATGGAGATGATGAAAGACAGGTTCGCGAAATTACTTCTTGGAGAA 300
Query 301 GATATGTCCGGTGGTGGGAAAGGCGTATCTTCTGCTCTGGCTCTTTCCAATGCCATCACA 360
|||||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 301 GATATGTCCGGTGGCGGGAAAGGTGTATCTTCTGCTCTGGCCCTTTCCAATGCTATCACA 360
Query 361 AATCTTGCTGCGTCTATATTCGGAGAACAAACAAAGCTACAACCGATGCCGCAAGATAGA 420
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 361 AATCTTGCTGCGTCTATATTCGGGGAACAAACAAAGCTACAGCCGATGCCGCAAGATAGA 420
Query 421 CAAGCGAGATGGAAGAAAGAGATTGATTGGTTATTATCCGTGACCGATCACATTGTCGAG 480
|||| ||| |||||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 421 CAAGTGAGGTGGAAGAAAGAGATCGATTGGTTATTGTCTGTGACCGATCACATTGTCGAG 480
Query 481 TTTGTTCCTTCTCAACAAACAAGCAAAGATGGAGTTTGCACTGAGATTATGGTGACAAGA 540
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 481 TTTGTTCCTTCTCAACAAACGAGCAAAGAAGGAGTTTGCACTGAGATTATGGTGACAAGA 540
Query 541 CAAAGAGGTGATCTTCTTATGAACATTCCAGCTCTTCGAAAACTTGACGCCATGCTCATC 600
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 541 CAAAGAGGTGATCTTCTTATGAACATTCCAGCTCTTCGAAAACTCGACGCCATGCTCATC 600
Query 601 GATACATTGGACAATTTCAGAGGACACAACGAGTTTTGGTATGTCTCAAGAGATTCAGAA 660
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 601 GATACATTGGACAATTTCAGAGGACACAACGAGTTTTGGTATGTCTCTAGAGATTCAGAA 660
Query 661 GAAGGGCAGCAAGCAAGGAATGATCGGACAAACGACAAGTGGTGGCTACCACCGGTTAAA 720
||||||||||| || ||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 661 GAAGGGCAGCAGGCGAGGAATGATCGGACAAACGACAAATGGTGGCTACCTCCGGTTAAA 720
Query 721 GTTCCTCCTGGAGGTTTATCAGAACCATCTCGGAGAATGCTTTACTTCCAAAAAGATTCA 780
|||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 721 GTTCCTCCCGGAGGTTTATCTGAACCAGCTCGGAGAATGCTTTACTTCCAAAAAGATTCA 780
Query 781 GTCACACAAGTTCAAAAAGCTGCAATGGCCATCAATGCTCAAGTCCTCTCAGAAATGGAA 840
|||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||| |
Sbjct 781 GTCACACAGGTTCAAAAAGCTGCAATGGCTATCAATGCTCAAGTCCTTTCAGAAATGGCA 840
Query 841 ATACCTGAGAGCTACATCGACTCTCTCCCAAAGAACGGAAGAGCCAGCCTCGGGGATTCG 900
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 841 ATACCTGAGAGCTACATCGACTCTCTCCCTAAGAACGGAAGAGCCAGCCTCGGGGATTCG 900
Query 901 ATATACAAGAGCATAACAGAGGAATGGTTTGATCCTGAGCAGTTCTTAGCGATGTTGGAC 960
|| |||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||
Sbjct 901 ATCTACAAGAGCATAACAGAGGAGTGGTTTGATCCGGAGCAGTTCTTATCGATGTTGGAC 960
Query 961 ATGTCGACAGAGCACAAAGTGTTGGATTTGAAGAACAGAATTGAGGCATCTGTTGTGATT 1020
|||||||||| ||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct 961 TTGTCGACAGAACACAAAGTGTTGGATTTGAAGAATAGGATTGAGGCATCTGTAGTGATT 1020
Query 1021 TGGAAGAGGAAGCTTCACACAAAGGACACCAAATCTTCGTGGGGCTCAGCAGTTAGCTTG 1080
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1021 TGGAAGAGGAAGCTTCACACAAAGGACACCAAATCTTCTTGGGGCTCAGCAGTTAGCTTG 1080
Query 1081 GAGAAGAGAGAATTGTTCGAAGAGAGAGCAGAAACAATCTTGGTCTTGCTCAAACAAAAA 1140
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1081 GAGAAGAGAGAATTGTTCGAAGAGAGAGCAGAAACAATCTTAGTCTTGCTTAAACAAAAA 1140
Query 1141 TTTCCCGGTCTTCCTCAATCTTCCCTTGACATCTCCAAGATTCAGTTTAACAAGGACGTT 1200
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1141 TTTCCCGGTCTTCCTCAATCTTCCCTTGACATATCCAAGATTCAGTTTAACAAGGACGTT 1200
Query 1201 GGGCAAGCGGTGTTGGAAAGTTACTCTAGGATACTTGAGAGCTTGGCTTACACAGTGATG 1260
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1201 GGGCAAGCGGTGTTGGAGAGTTACTCTAGGATACTTGAGAGCTTGGCTTATACAGTGATG 1260
Query 1261 TCAAGGATAGAAGATGTTCTTTACACAGATACATTGGCACTAAAGCAAACTTTATTGGCT 1320
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1261 TCAAGAATAGAAGATGTTCTTTACACAGATTCATTGGCACTAAAGCAAACTTTATTGGCT 1320
Query 1321 GAAGAAACATCAGATGGTGGGAGAACAACAGAGACGGATTCCGAGTCAGCGGGATCTTCT 1380
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1321 GAAGAAACATCAGATGGTGGGAGAACAACCGAGACGGATTCCGAGTCAGCGGGATCTTCT 1380
Query 1381 AACTCGGGAGAAGAAGCCGAGAAGCATGACCCACACT-C-C-AAGACCTTGTTGGATTTT 1437
||||||||||||||| ||||||||| ||||||||||| | | ||||||||||||||||||
Sbjct 1381 AACTCGGGAGAAGAAACCGAGAAGCTTGACCCACACTACTCCAAGACCTTGTTGGATTTT 1440
Query 1438 ATGGGTTGGAATGATAATAGTTCCAAAGGAGGCGATAAACCTACTAAATCTCCAAACCTT 1497
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||
Sbjct 1441 ATGGGTTGGAATGATAATAGTTCGAAAGGCGGCGATAAACCTACTAAATCTCCAAACATT 1500
Query 1498 ACGCCGAAAAAGCTCTCATACTTGGAGAAGTTAGAGAATTTAAACGGTTTTAGAAGTCCC 1557
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1501 ACGCCGAAAAAGCTCTCTTACTTGGAGAAGTTAGAGAATTTGAACGGTTTTAGAAGTCCG 1560
Query 1558 AAAGATAGGCATT 1570
|||||||| ||||
Sbjct 1561 AAAGATAGACATT 1573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58887518770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5