BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24630.1
Length=2489
Score E
Sequences producing significant alignments: (Bits) Value
Ahg342635 jgi|Araly1|342635|fgenesh1_pg.C_scaffold_3002398 3125 0.0
Ahg925684 jgi|Araly1|925684|scaffold_201245.1 191 2e-47
Ahg925867 jgi|Araly1|925867|scaffold_201428.1 185 1e-45
> Ahg342635 jgi|Araly1|342635|fgenesh1_pg.C_scaffold_3002398
Length=2205
Score = 3125 bits (1692), Expect = 0.0
Identities = 2049/2215 (93%), Gaps = 50/2215 (2%)
Strand=Plus/Plus
Query 179 ATGCCTGAAGGGAAATTAAGATCAGGAGTTTATAGATCATTCATAATGTGTGATGATCCA 238
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCCTGAAGGGAAATTGAGATCAGGAGTTTATAGATCATTCATAATGTGTGATGATCCA 60
Query 239 AGAGATGTTGTTGAATGTGGAGCTATTAAGAAACAGAGTAAGAGCCGTAGTAGTAGTACT 298
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 AGAGATGTTGTTGAATGTGGAGCTATTAAGAAACAGAGTAAGAGTCGTAGTAGTAGTACT 120
Query 299 AAACAGAGATGTGAAGAACATCTTTCGAAAGTGAAAGAGCGGTCCGAAATGGCGGTGGCG 358
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 AAACAGAGATGTGAAGAACATCTTTCGAAAGCGAAAGAGCGGTCCGAAATGGCGGTGGCG 180
Query 359 CCTAGGAAGAGTAGTAGTACAGAGGATGTTCCTCCTTCTTCGTTGCAGCTTTTGAGAGTA 418
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCTAGGAAGAGTAGTA---CAGAGGATGTTCCTCCTTCTTCGTTGCAGCTTTTGAGAGTA 237
Query 419 TCCAAAGGGATTCAGAAATTGAATGTTGCAATTGAGTCATTGTCTAAAGGTTTTAGCTTT 478
|| ||||||||||||||| |||||||||| |||||||||| ||||||||| |||||||||
Sbjct 238 TCTAAAGGGATTCAGAAACTGAATGTTGCGATTGAGTCATGGTCTAAAGGGTTTAGCTTT 297
Query 479 GAGGCGGTGTCAAGGCCTGAGGATATAGCGAAAGATCTGTTGAGAGGAGCTCTTGATTTG 538
||||| ||||| |||||||||||||||||||||||| |||| |||||||| |||||||||
Sbjct 298 GAGGCAGTGTCGAGGCCTGAGGATATAGCGAAAGATTTGTTAAGAGGAGCACTTGATTTG 357
Query 539 GAAGAGTCTTTAGCTATGTTAAGTAGTATTCAAGAAGATGATAGTAAGCGGAAACCGATG 598
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 358 GAAGAGTCTTTAGCTATGTTAAGTAGTATTCAAGAAGATGATAGTAAGCAGAAACCGAGG 417
Query 599 ATTCGGAACGATGGAAGAAGCGATTTGCGGTTTCAAAGATCGATGTCTGATAGATTCGGA 658
||| | || || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 418 ATTTGTAAAGACGGAAGAAGCGATTTGCGGTTTCAAAGATCGATGTCGGATAGATTCGGA 477
Query 659 GAGCG-GATTGAGAAACGGATGATGGTTCAAGAGAATGTAGCGTCTAAGGATTGTTATGA 717
||||| | |||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 478 GAGCGAG-TTGAGAAACGGATGATGGTTCAAGAGAATGTAGCATCAAAGGATTGTTATGA 536
Query 718 AGAGTTAAGGAAAGTGATTAGAGAGAGTTTTCTTAGGCAGAATCTTGTTTCACAAACAAC 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 AGAGTTAAGGAAAGTGATTAGAGAGAGTTTTCTTAGGCAGAATCTTGTTTCACAAACAAC 596
Query 778 TACTATAGAGACTAAGAAACGAGTTGTTAGAAGTGATTTTGCTTCCTCTTCTGGAGCTGT 837
||||| | |||||||| ||||||||||||| |||||||||||| |||||||||||||
Sbjct 597 TACTACGGGGACTAAGACTCGAGTTGTTAGAAATGATTTTGCTTCTTCTTCTGGAGCTGC 656
Query 838 GTCGTCGTCAACTAGCTCGAGCCAATCTTCAATGGTTTCTGGCTCTACTAAGTCCTCTGC 897
||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 657 ATCGTCGTCAACGAGCTCGAGCCAATCTTCTATGGTTTCTGGCTCTACAAAGTCCTCTGT 716
Query 898 TTCGTCTGATGTTCCACAGAGAGCTCCAAGTTTGATTGCTAGGCTTATGGGTTTGGATGT 957
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TTCGTCTGATATTCCACGGAGAGCTCCAAGTTTGATTGCTAGGCTTATGGGTTTGGATGT 776
Query 958 ATCAACTCAAGAACCGAGGAAAAGCTCGGTGAATCATATCGATAAGCCGGATATTTTAAA 1017
||||||||||||||| || |||||| ||||||||||||| |||||| ||||| |||||||
Sbjct 777 ATCAACTCAAGAACCAAGCAAAAGCACGGTGAATCATATTGATAAGGCGGATGTTTTAAA 836
Query 1018 GCTGTCATCAGAAAGACAAGAGAAGGTGAAGAAGAATAGTAAGGAGAGTCCTGAAATTGT 1077
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 837 GCTGTCATCAGAAAGACAAGAGAAGGTGAAGAAGAATAATAAGGAGAGTCCTGAAATTGT 896
Query 1078 GAGATGCAACTCTACAAGAGAAGCTGCTTTACAGTCTTTGCCTGAAGAGACTCCGAGCGA 1137
|||||||| ||||| |||||||||| |||||| |||||||||||||||| |||||| ||
Sbjct 897 GAGATGCAGCTCTATGAGAGAAGCTGTTTTACAATCTTTGCCTGAAGAGATTCCGAGAGA 956
Query 1138 GAATCCTTCGACTATAGTACTCATCAGACCTATGCGTGTTGTAAAACC-G-GA---A--- 1189
|||||| |||||||||||||||||||||||||||||||||||| |||| | || |
Sbjct 957 GAATCCCTCGACTATAGTACTCATCAGACCTATGCGTGTTGTACAACCCGAGATGGAAGA 1016
Query 1190 ----CCGGGAAGCAAACAACCGGTTGTACCAAAGAAACCGAGAATGCAAGGGGAGGTTCA 1245
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1017 AAAGCCGGGAAGCAAACGACCGGTTGTACCTAAGAAACCGAGAATGCAAGGGGAGGTTCA 1076
Query 1246 TCCAAGAATGATTAACCAGAGAAAAGATCATCAAGCTAATGGAAGCAACAAAATGAAATT 1305
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1077 TCCAAGAATGATTAACCAGAGAAAAGATCATCAAGCCAAGGGAAGCAACAAAATGAAATT 1136
Query 1306 ACCATTACGTATGACCAAGAAGGACAAAGAACCGAAAGAAATGGTGCCTAAAGTAGAAGA 1365
||||||| || |||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1137 ACCATTAAGTCTGACCAAGAAAGACAAAGAACCGAAAGAAATGGTGCGGAAAGTAGAAGA 1196
Query 1366 GAATGAAGGTAAGGTCATCAAGCTAATGTCTCCAAGCAATGCCA-AAGTTCTAACAAGAG 1424
||||||||||||||| ||||||||||||||||||||||||| || || | ||||| ||||
Sbjct 1197 GAATGAAGGTAAGGTGATCAAGCTAATGTCTCCAAGCAATGGCAGAACT-CTAACTAGAG 1255
Query 1425 ATCGAAAACCGTTGGAAACCAACAAAA--AAC-------TTGTTGTCAAGAAGGATGATA 1475
||||||||||||||||||||||||||| ||| |||||||||||||||| ||||
Sbjct 1256 ATCGAAAACCGTTGGAAACCAACAAAACCAACAAAAAACTTGTTGTCAAGAAGGAGGATA 1315
Query 1476 TTGCTGAAGGCAAAGACAGACATAGA------G-C-----TCTTAAACCACCCAGCAATC 1523
|||||||||| ||||||||||||||| | | |||||||||||| ||||||
Sbjct 1316 TTGCTGAAGGTAAAGACAGACATAGACCTCATGACCGAGCTCTTAAACCACCTAGCAATT 1375
Query 1524 CTGTGAGTCAAAAGATATCGAACAATTCTTCAGACGTATCAAGAAACAAGAGTCGACGTT 1583
||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 CTGCGACTCAAAAGAAATCGAACAATTCTTCAGACGTATCAAGAAACAAGAGTCGACGTT 1435
Query 1584 CCAGTAGGTTGAGCTCAAGCTCTAGTAGTGGTAGCCGGGAAAAGAAGTCCGGTGAGGCTA 1643
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1436 CCAGCAGGTTGAGCTCAAGCTCTAGTAGTGGTAGCCGAGAAAAGAAGTCCGGTGAGGCTA 1495
Query 1644 GTAGACCAAATGCCAAGAAGAAACTCCGTCAACAAGACAACGACCTCGGTTCAGAGAATA 1703
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1496 GTAGACCAAATGCCAAGAAGAAACTCCGTCAACAAGACAACAACCTCGGTTCAGAGAATC 1555
Query 1704 ATTCATGCTCTTCACAAGAGACGCATGGATCACTTAACCAACTGTCTACAGAGGAAACCA 1763
|||| ||||||||| || |||| |||||||||||||||||| |||||||| |||||||
Sbjct 1556 ATTC---CTCTTCACAGGACACGCTTGGATCACTTAACCAACTTTCTACAGAAGAAACCA 1612
Query 1764 CTTCTTCAGAGTTTCACAATCAAGGCCATTGTGACAATGGAGAAGTTTCATCATGTGCTG 1823
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1613 TTTCTTCAGAGTTTCACAATCAAGGCCAATGTGACAATGGAGAAGTTTCATCTTGTGCTG 1672
Query 1824 CCACAATTCACCATTCTCATGAGCCAGAAACATCCCAAATCTCTCTTAAGTCATTCCTAT 1883
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1673 CCACAATTCACTATTCTCATGAGCCAGAAACATCCCAAATCTCTCTTAAATCATTCCTAT 1732
Query 1884 CCACCTCCTCGGATTTCATCAGCTACGCAGAGGATCTCTTCGACTTCAACACCAACACCG 1943
||| |||||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1733 CCAGCTCCTCAGAGTTCATCAGCTACGCAGAGGATCTTTTCGACTTCAACACCAACACTA 1792
Query 1944 AACGAAGCAGAGAATCAAACTTTCGAAGA-AGAGATAGCATTGTGATCTCAGACCAAAGA 2002
|||||||| |||||||||||||| ||| | ||||||| ||||||||| ||||||||||||
Sbjct 1793 AACGAAGCCGAGAATCAAACTTTGGAA-ATAGAGATAACATTGTGATATCAGACCAAAGA 1851
Query 2003 CTAGCACTAGACTTTGCCAAAGAAGTAGTCAGACGCAAAAGCCTTCTTCTAGCAGAACCA 2062
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
Sbjct 1852 CTAGCACTAGACTTTGCCAAAGAAGTAGCCAGACGCAAAAGCCTTCTTCTAGCCGAAC-A 1910
Query 2063 AC-GTGTCACACACGAAGCTCTTTGGACATTGATGAGTTGTTGACAGAAGTCTGTGATGG 2121
|| |||||||||| ||||||||||| ||||||||||| |||| | |||||||| |||||
Sbjct 1911 ACCGTGTCACACAAGAAGCTCTTTGCACATTGATGAGGTGTTAATGGAAGTCTGCGATGG 1970
Query 2122 GTTTGAGTCTCTGACAAGTTACAAAGACACGTTTTCAGGACAAAACAGCTTCGTTAAAGA 2181
||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 1971 GTTTGAGTCTCTGGGAAGTTACAAAGACACGTTTTTAGGACAGAACAGCTTCGTTAAAGA 2030
Query 2182 GAGCATTCACTTGGTGTTGGAGAAGGATTTAAAGGGTAAGAAGACAGAGATGACAAGTGG 2241
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2031 GACCATTCACTTGGTGTTGGAGAAGGATTTAAAGGGTAAGAAGACAGAGATGACAAGTGG 2090
Query 2242 AGTTTGGGATTTGGGTTGGAGAAGTGAGTTTCAGATTGATGAAACTTATGAAGCTGTAGC 2301
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 2091 AGTTTGGGATTTGGGTTGGAAAAATGAGTTTCAGATTGATGAAACTTATGAAGCTGTAGT 2150
Query 2302 --T-GACTTAGAGAAACTTATCTTGTCCGGTTTGATCCAAGAGATTATCTCTTGA 2353
| |||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 2151 AGTTGACTTAGAGAAACTTATCTTGTCCAGTTTGATCCAAGAAATTATCTCTTGA 2205
> Ahg925684 jgi|Araly1|925684|scaffold_201245.1
Length=577
Score = 191 bits (103), Expect = 2e-47
Identities = 114/119 (96%), Gaps = 1/119 (1%)
Strand=Plus/Plus
Query 173 AAA-ACAATGCCTGAAGGGAAATTAAGATCAGGAGTTTATAGATCATTCATAATGTGTGA 231
||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 17 AAACACAATGCCTGAAGGGAAATTGAGATCAGGAGTTTATAGATCATTTATAATGTGTGA 76
Query 232 TGATCCAAGAGATGTTGTTGAATGTGGAGCTATTAAGAAACAGAGTAAGAGCCGTAGTA 290
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 77 TGATCCAAGAGATGTTGTGGATTGTGGAGCTATTAAGAAACAGAGTAAGAGCCGTAGTA 135
> Ahg925867 jgi|Araly1|925867|scaffold_201428.1
Length=281
Score = 185 bits (100), Expect = 1e-45
Identities = 114/120 (95%), Gaps = 3/120 (3%)
Strand=Plus/Plus
Query 173 AAA-ACAATGCCTGAAGGGAAATT-AAGATCAGGAGTTTATAGATCATTCATAATGTGTG 230
||| |||||||||||||||||||| || ||||||||||||||||||||| ||||||||||
Sbjct 15 AAACACAATGCCTGAAGGGAAATTGAA-ATCAGGAGTTTATAGATCATTTATAATGTGTG 73
Query 231 ATGATCCAAGAGATGTTGTTGAATGTGGAGCTATTAAGAAACAGAGTAAGAGCCGTAGTA 290
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 74 ATGATCCAAGAGATGTTGTGGATTGTGGAGCTATTAAGAAACAGAGTAAGAGCCGTAGTA 133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93816273435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5