BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24670.1
Length=1589
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930576 jgi|Araly1|930576|scaffold_303033.1 2170 0.0
Ahg333008 jgi|Araly1|333008|fgenesh1_pm.C_scaffold_9000036 1026 0.0
> Ahg930576 jgi|Araly1|930576|scaffold_303033.1
Length=1369
Score = 2170 bits (1175), Expect = 0.0
Identities = 1291/1347 (96%), Gaps = 8/1347 (1%)
Strand=Plus/Plus
Query 1 ATGGTGATCTTTAGCAGAAGCTTCTTAGCTCTCTCAACGACTCTAATCATTCTAGCATTA 60
|||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 27 ATGGCGATCTTTAGCAGAAGCTTCTTAGCTCTCTCAGCAACTCTAATCATTCTAGCATTA 86
Query 61 TGTATAAAT--T-CATCAACAATGGCTCAAGAAACAGAGGACCTAAACTCTCATAGCTCG 117
||||||||| | |||||||||||||||||||||| ||| ||||| ||||||||||||
Sbjct 87 TGTATAAATAATGCATCAACAATGGCTCAAGAAAC---GGAGCTAAAATCTCATAGCTCG 143
Query 118 AGTAATTCATCAACGGCTAATAAGTTACCTAACGACGACGGTGCATGGAATGAACACGCA 177
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 144 AGTAATTCATCAACGGCTAATACGTTACCTAACGACGACGGTGCATGGAATGAACACGCC 203
Query 178 GTTAAAAACCCAGAAGAAGTAGCTGCAATGGTCGATATGAAAATAAAGAACAGTACAGAG 237
|||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct 204 GTTAAAAACCCAGAAGAAGTAGCTGCAATGGTCGATATGACGATTAAGAACAGTACGGAG 263
Query 238 CGGAGGAGGTTAGGATTCTTCTCATGCGCCACCGGAAACCCAATAGACGACTGTTGGAGA 297
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 264 CGGAGGAGGTTAGGATTCTTCTCATGCGCCACCGGAAACCCAATCGACGACTGTTGGAGA 323
Query 298 TGTGATCGGAATTGGCATCTCCGACGAAAGCGTCTCGCGAATTGCGCGATCGGATTCGGT 357
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 324 TGTGATCGGAACTGGCATCTCCGACGAAAGCGTCTCGCGAATTGCGCAATCGGATTCGGT 383
Query 358 CGTAACGCTA-TCGGAGGACGAGATGGTCGTTACTACGTAGTCACAGATCCATCTGACCA 416
|||||||| | |||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 384 CGTAACGC-AGTCGGAGGACGAGATGGTCGTTACTACGTCGTCACAGATCCATCAGACCA 442
Query 417 CGACGCGGTTAATCCACGACCAGGAACACTCCGTCACGCTGTGATACAAGACCGTCCGTT 476
||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||
Sbjct 443 CGACGCGGTTAATCCACGACCGGGAACGCTCCGTCACGCCGTGATTCAAGACCGTCCGTT 502
Query 477 ATGGATCGTCTTCAAGCGAGACATGGTGATTACTCTAACTCAAGAGCTAATCATGAACAG 536
||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 503 ATGGATCGTCTTCAAACGCGACATGGTGATTACTCTAACTCAAGAGCTAATCATGAATAG 562
Query 537 CTTCAAAACAATCGATGGAAGAGGCGTGAACGTTGCAATCGCAGGCGGTGCTTGTATTAC 596
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 563 CTTCAAAACGATCGATGGAAGAGGCGTGAACGTTGCAATCGCAGGCGGTGCTTGTATCAC 622
Query 597 GATTCAGTATGTGACGAATATTATCATCCATGGGATTAATGTACATGATTGTAGAAGAAC 656
||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 623 GATCCAGTTTGTGACGAATATTATCATCCATGGGATTAATATACATGATTGTAGAAGGAC 682
Query 657 TGGTAATGCTATGGTTCGAAGCTCGCCGTCGCATTATGGGTGGAGGACTATGGCGGATGG 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 TGGTAATGCTATGGTTCGAAGCTCGCCGTCGCATTATGGGTGGAGGACTATGGCGGATGG 742
Query 717 TGATGCTATATCGATATTTGGATCGAGTCATATTTGGATTGATCATAACTCTTTGTCTAA 776
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 743 TGATGCTATATCGATTTTTGGATCGAGTCATATTTGGATTGATCATAATTCTTTGTCTAA 802
Query 777 TTGTGCTGATGGTTTGATTGATGCTATTATGGGATCTACTGCTATTACTATCTCCAATAA 836
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 803 TTGTGCTGATGGATTGATTGATGCGATTATGGGATCTACTGCTATTACTATCTCCAATAA 862
Query 837 CTACATGACTCACCACAACGAGGTTATGTTGATGGGGCATAGTGATTCGTACACTAGAGA 896
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 863 CTATATGACTCACCACAACGAGGTTATGTTGATGGGGCATAGTGATTCATACACTAGAGA 922
Query 897 CAAGTTGATGCAAGTGACAATAGCATATAACCATTTTGGGGAAGGGCTTATACAGAGAAT 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 CAAGTTGATGCAAGTGACAATAGCATATAACCATTTTGGGGAAGGGCTTATACAGAGAAT 982
Query 957 GCCGAGGTGTAGACATGGTTATTTCCATGTTGTAAACAATGATTATACTCATTGGGTAAT 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 983 GCCGAGGTGTAGACATGGTTATTTCCATGTTGTAAACAATGATTATACTCATTGGGTAAT 1042
Query 1017 GTATGCAATTGGTGGAAGTGCTAACCCTACTATCAATAGTCAAGGCAATCGTTTCCTTGC 1076
|||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 1043 GTATGCAATTGGTGGAAGTGCTAACCCTACCATCAATAGCCAAGGCAATCGGTTCCTTGC 1102
Query 1077 CCCGGGCAACCCTTTCGCCAAAGAGGTGACAAAGAGGGTAGGTTCATGGCAAGGGGAATG 1136
|||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1103 CCCGGGAAACCCTTTTGCCAAAGAGGTGACAAAGAGGGTAGGTTCATGGCAAGGAGAATG 1162
Query 1137 GAAGCAATGGAACTGGAGATCTCAAGGAGACCTAATGCTCAACGGTGCCTACTTCACTAA 1196
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1163 GAAGCAATGGAACTGGAGATCACAGGGAGACCTAATGCTCAACGGTGCCTACTTCACTAA 1222
Query 1197 ATCTGGAGCTGCTGCTCCTGCAAGCTATGCCAGAGCCTCTAGCTTGGGAGCTAAACCAGC 1256
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1223 ATCTGGAGCTGCTGCTCCTGCAAGCTATGCCAGAGCCTCTAGTTTGGGAGCTAAACCAGC 1282
Query 1257 TTCTGTAGTAAGTATGCTTACCTACAGCTCCGGTGCCCTTAAATGCAGGATCGGTATGCG 1316
||| || ||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1283 TTCCGTTGTAAGTATGCTTACCTACAGCTCTGGTGCCCTTAGATGCAGGATCGGTATGCG 1342
Query 1317 GTGTTAGTTAATTGTATAATCCTCAAA 1343
|||||||||||||||||||||||||||
Sbjct 1343 GTGTTAGTTAATTGTATAATCCTCAAA 1369
> Ahg333008 jgi|Araly1|333008|fgenesh1_pm.C_scaffold_9000036
Length=1257
Score = 1026 bits (555), Expect = 0.0
Identities = 985/1190 (83%), Gaps = 39/1190 (3%)
Strand=Plus/Plus
Query 154 GACGGTGCATGGAATGAACACGCAGTTAAAAACCCAGAAGAAGTAGCTGCAATGGTCGAT 213
||||||| |||| |||||||||| |||||| ||||||||||| |||| ||| ||||||||
Sbjct 85 GACGGTGAATGGCATGAACACGCCGTTAAAGACCCAGAAGAAATAGCAGCACTGGTCGAT 144
Query 214 ATGAAAATAAAG-AACAGTACAG-AGCGGAGGAGGTTAGGATTC-T-T-CTCATGCGCCA 268
|||| || | | |||||||| | | || || | | |||| ||| | | ||| |||| |
Sbjct 145 ATGAGTAT-ACGTAACAGTAC-GTATCGTAGAAAGCTAGGGTTCTTCTCCTCTTGCGAAA 202
Query 269 CCGGAAACCCAATAGACGACTGTTGGAGATGTGATCGGAATTGGCATCTCC-GACGAAAG 327
| ||||||||||| || || |||||| |||| ||| || ||||||| || || ||||
Sbjct 203 CTGGAAACCCAATCGATGATTGTTGGCGATGCGATAAAAAATGGCATCGCCGGA-GAAAA 261
Query 328 CG-TCTCGCGAATTGCGCGATCGGATTCGGTCGTAACGCTA-TCGGAGGACGAGATGGTC 385
|| | | ||| ||||||||| || ||||| |||||||| | | ||||| || ||||| |
Sbjct 262 CGAT-TAGCGGGTTGCGCGATTGGTTTCGGACGTAACGC-AGTTGGAGGCCGTGATGGAC 319
Query 386 GTTACTACGTAGTCACAGATCCATCTGACCACGACGCGGTTAATCCACGACCAGGAACAC 445
|||||||| | || || ||||||||||| || ||| ||||||| ||| ||| || ||||
Sbjct 320 GTTACTACATTGTTACTGATCCATCTGATCATGACCCGGTTAACCCAAAACCCGGTACAC 379
Query 446 TCC-GTCACGCTGTGATACAAGACCG-TCCGTTATGGATCGTCTTCAAGCGAGACATGGT 503
||| || |||||||||||||||| || ||| |||||||||| || || || ||||||||
Sbjct 380 TCCGGT-ACGCTGTGATACAAGA-CGAACCGCTATGGATCGTATTTAAACGTGACATGGT 437
Query 504 GATTACTCTAA-CTCAAGAGCTAATCATGAACAGCTTCAAAACAATCGATGGAAGAGGCG 562
|||||| ||| | ||||| ||||||||||| ||||||||||| || ||||| | ||||
Sbjct 438 CATTACTTTAAGC-CAAGAACTAATCATGAATAGCTTCAAAACGATTGATGGTCGTGGCG 496
Query 563 TGAACGTTGCA-ATCGCAGGCGGTGCTTGTATTACGATTCAGTATGTGACGAATATTATC 621
|||||| | || || || || ||||| ||||| ||||||||||| || ||||||||||||
Sbjct 497 TGAACG-TACATATAGCTGGTGGTGCATGTATCACGATTCAGTACGTTACGAATATTATC 555
Query 622 ATCCATGGGATTAATGTACATGATTGT-AGAAGAACTGGTAATGCTATGGTTCGAAGCTC 680
||||||||||||||| | || |||||| || |||||||||| ||||||||||| || ||
Sbjct 556 ATCCATGGGATTAATATTCACGATTGTAAG-CGAACTGGTAACGCTATGGTTCGGAGTTC 614
Query 681 GCCGTCG-CATTATGGGTGGAGGACTATGGCGGATGGTGATGCTATATCGATATTTGGAT 739
| | | |||||||| ||||| |||||||| |||||||||| |||||||| |||||||
Sbjct 615 GGAG-AGTCATTATGGTTGGAGAACTATGGCTGATGGTGATGGGATATCGATTTTTGGAT 673
Query 740 CGAGTCATATTTGGATTGATCATAACTCT-TTGTCTAATTGTGCTGATGGTTTGATTGAT 798
||||||||||||||||||||||||| ||| || || |||||||||||||| ||||| |||
Sbjct 674 CGAGTCATATTTGGATTGATCATAATTCTCTT-TCGAATTGTGCTGATGGATTGATAGAT 732
Query 799 GCTATTATGGGATCTACTGCTATTACTATCTCCAATAACTA-CATGACTCACCACAACGA 857
|| ||||||||||||||||||||||| ||||| ||||| || | | ||||||||||| ||
Sbjct 733 GCAATTATGGGATCTACTGCTATTACCATCTCTAATAATTATC-TCACTCACCACAATGA 791
Query 858 GGTTATGTTGATGGGGCATAGTGATTCGTACACTAGAGACAAGTTGATGCAAGTGACAAT 917
|| ||| ||| ||||||||| ||||| ||||| |||||||| |||||||||| || ||
Sbjct 792 GGCTATTTTGTTGGGGCATACCGATTCATACACCAGAGACAAAATGATGCAAGTAACCAT 851
Query 918 AGCATATAACCATTTTGGGGAAGGG-CTTATACAGAGAATGCCGAGGTGTAGACATGGTT 976
||||| ||||||||||| || ||| ||| ||||||||||||| ||||| || ||||| |
Sbjct 852 TGCATACAACCATTTTGGAGA-GGGTCTTGTACAGAGAATGCCAAGGTGCAGGCATGGAT 910
Query 977 ATTTCCATGTTGTAAACAATGATTATACTCATTGGGTAATGTATGCAATTGGTGGAAGTG 1036
| |||||||| |||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 911 ACTTCCATGTAGTAAACAACGATTACACTCACTGGGTAATGTATGCAATTGGTGGAAGTG 970
Query 1037 CTAACCCTACTATCAATAGTCAAGGCAATCGTTTCCTTGCCCCGGGCAACCCTTTCGCCA 1096
|||| ||||| |||||||||||||| || || |||||||||||||| |||| |||||| |
Sbjct 971 CTAATCCTACCATCAATAGTCAAGGAAACCGGTTCCTTGCCCCGGGAAACCGTTTCGCTA 1030
Query 1097 AAGAGGTGAC-AAAGAGGGTAGGTTCATGGCAAGGGGAATGGAAGCAAT-GGAACTGGAG 1154
| |||||||| ||| |||||||| || || |||| |||||||| |||| ||||||||||
Sbjct 1031 AGGAGGTGACGAAAC-GGGTAGGTGCAGGGGAAGGAGAATGGAA-CAATTGGAACTGGAG 1088
Query 1155 ATCTCAAGGAGACCTAATGCTCAACGGTGCCTACTTCACTAAATCTGGAGCTGCTGCTCC 1214
||| ||||||||| |||||||||| ||||||||||| ||| ||||||||||| ||| |
Sbjct 1089 ATCCCAAGGAGACTTAATGCTCAATGGTGCCTACTTTACTTCATCTGGAGCTGGAGCTTC 1148
Query 1215 TGCAAGCTATGCCAGAGCCTCTAGCTTGGGAGCTAAACCAGCTTCTGTAGTAAGTATGCT 1274
||||| || |||||||||||||| |||| |||||| || |||| | ||| |||||||
Sbjct 1149 TGCAAATTACGCCAGAGCCTCTAGTTTGGCTGCTAAATCATCTTCCCTTGTAGGTATGCT 1208
Query 1275 TACCTAC-AGCTCCGGTGCCCTT-AAATGCAGGATCGGTATGCGGTGTTA 1322
||||| | ||||| ||||| || |||||||||||||||| || |||||
Sbjct 1209 TACCT-CTAGCTCAGGTGCT-TTCAAATGCAGGATCGGTACGCTTTGTTA 1256
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59535052935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5