BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24690.1
Length=765
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479980 jgi|Araly1|479980|fgenesh2_kg.3__2681__AT3G24690.1 680 0.0
> Ahg479980 jgi|Araly1|479980|fgenesh2_kg.3__2681__AT3G24690.1
Length=693
Score = 680 bits (368), Expect = 0.0
Identities = 480/530 (91%), Gaps = 23/530 (4%)
Strand=Plus/Plus
Query 23 TTTCTTGTTCTCTTTCTCCGCCGTGGTTATCTATCTCAGACGTTCTCATCGCTCAT-CTT 81
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct 1 TTTCTTGTTCTCTTGCTCCGCCGTGGTTATCTTTCTCAGACGTTCTCATCGCTCATAC-T 59
Query 82 GACATCATGGCCGCCGTAGAAGGACAAATCTCGGCTCTCATCAGCAAACGTCTCCGTACT 141
|| | |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 60 GATACCATGGCCGCCGTAGAAGGACCAATCTTGGCTCTCATCAGCAAACGTCTCCGTACT 119
Query 142 CTCCGCAAGAAATACAACCGTATAACTGACATGGAAGAGTCGATTTCTCAGGGGAAAACA 201
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 120 CTCCGCAAGAAATACAACCGTATTACTGACATGGAAGAGTCGATTTCTCAGGGAAAAACA 179
Query 202 CTAAACAAGGAACAAGAAGACACCCTCCGTTCAAAGCCAATCGTCTCCGCCCTTATCGAT 261
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 180 CTAAACAAGGAACAAGAAGAAACCCTCCGTTCAAAGCCAATCGTCACCGCCCTTATCGAT 239
Query 262 GAGCTCGTAAAGCTCCGCATTCCTCCTCCTTCTGCAGCCATTTCAGAAGAGACCAGCCCC 321
|||||| |||| |||||||| ||||||||||| | | | ||||||||| || | |
Sbjct 240 GAGCTCATAAATCTCCGCATCCCTCCTCCTTC--C-G---TGGCAGAAGAGATCAATCTC 293
Query 322 CCTGCTAAGAACAAGAAACAGCAAAAGTTATCCCACGCACGTAAGGAGGTAGCTGAGGAG 381
||||||||| |||||||| |||||||| |||||||||||||| |||||||||
Sbjct 294 CCTGCTAAGGACAAGAAAAAGCAAAAG---------GCACGTAAGGAGGTGGCTGAGGAG 344
Query 382 GAAAACGTGACGGCCAAGACAGATATCGAGGATTGCAAGATCTCTGATGATGGTATCAAT 441
|||||||| |||||||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 345 GAAAACGTAACGGCCAAGACAGATATCGAGGATTGCAAGATCTCTGATG--G-TCTCAAT 401
Query 442 TCTGA-G-G-TTTCCAAGGACGATACTTCTCCTAGTAGCGAAAGCTCACAAGGTGTTACG 498
||||| | | ||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 402 TCTGATGAGGTTTCCAAGGACGACACTTCTCCTAGTAGCGAAAGCTCAGAAGGTGTTACG 461
Query 499 CCATCGCCGCTTAGCAGAAAGGCACGACGTAAACGGAACGCGAAGAAACC 548
|||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 462 CCATCGCCCCTTAGCAGAAAGGCACGACGTAAACGGAACGCGAAGAAACC 511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28210958580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5