BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24715.1
Length=3354
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319179 jgi|Araly1|319179|fgenesh1_pm.C_scaffold_3002195 4994 0.0
Ahg477126 jgi|Araly1|477126|fgenesh2_kg.2__2256__AT1G79570.1 350 5e-95
> Ahg319179 jgi|Araly1|319179|fgenesh1_pm.C_scaffold_3002195
Length=3369
Score = 4994 bits (2704), Expect = 0.0
Identities = 3164/3383 (94%), Gaps = 43/3383 (1%)
Strand=Plus/Plus
Query 1 ATGTCAGATAGATGGGCTCGACAAAACGCGGAACGTCCTGCAACTACTTTGGCTGAGAGA 60
|||||||||||||||||| |||||||||||||| |||||| || |||||||||||||
Sbjct 1 ATGTCAGATAGATGGGCTGGACAAAACGCGGAA---CCTGCAGCTGTTTTGGCTGAGAGA 57
Query 61 AGAAATGTGAATAAAAACGTTTCACTTCAGACTGGTGAAGAGTTTTCAATGGAGTTTCTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 AGAAATGTGAATAAAAACGTTTCACTTCAGACTGGTGAAGAGTTTTCAATGGAGTTTCTT 117
Query 121 AAGGATCATACTCCTGTCCAATCTCCTATCGTTGCA-GGAAGAACTCATAATGATGTGCA 179
|||||||||||||| || ||||||||||||||| || |||| ||| ||||||||||||||
Sbjct 118 AAGGATCATACTCCGGTTCAATCTCCTATCGTTTCAGGGAA-AACGCATAATGATGTGCA 176
Query 180 TAGATTTGGAGACCTTTACTATCAGAATCAACCACAGGGGTATGATAGTGCTGCTCGGTT 239
||||||||| || |||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 177 TAGATTTGGGGATCTTTACTATCAGAATCAACCACCGGGGTATGACAGTGCTGCTCGGTT 236
Query 240 TCATGAACTGAGGAGGATAGAATCTGAATGTCCTTCTGATGCATATGATTTTGGTCGAGA 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 237 TCATGAACTGAGGAGGATAGAATCTGAATGTCCTTCTGATGCATATGATTTTGGACGAGA 296
Query 300 CCCGAGGAGTACTATACG-GCTTGAGAATGGCGGTTATATGCCTCATTTTAATGCTTACC 358
|||||||||| ||||||| | |||||||||| |||||||| |||||||||||||||||||
Sbjct 297 CCCGAGGAGTTCTATACGAG-TTGAGAATGGTGGTTATATCCCTCATTTTAATGCTTACC 355
Query 359 ACAATGTAGGTTGTGATAAAGAAGTTATTACTAGGAAAGCTTTTGGTGAAATAAATTCTA 418
||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 356 ACAATGTAGGTGGTGAGAAAGAAGTTATAACTAGGAAAGCTTTTGGTGAAATAAATTCTA 415
Query 419 ACCGAGGAGATGTCACGGGGATGTCTGCGCCTTGCGTGTTCTTGCCAGAGCGTACTCAGT 478
| ||||||||||||||||||| |||||||||||| |||||||| ||||||||| |||||
Sbjct 416 ATCGAGGAGATGTCACGGGGAGGTCTGCGCCTTGTGTGTTCTTACCAGAGCGTGTTCAGT 475
Query 479 CCAACAACTTTACCGGAGGAGGAGGAGATTTTGATAGATTCGGAAAAGTAAAGTTTCTTT 538
||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 476 CCAACAACTATACCGGAGGAGGAGGAGATTTCGATAGATTAGGAAAAGTAAAGTTTCTTT 535
Query 539 GTAGCTTTGGTGGTAGAATTATGCCAAGATCCACTGATGAAAAACTGAAATACGTTGGAG 598
| ||||||||||| ||||||||||| |||||||||||||||||||| ||||| || || |
Sbjct 536 GCAGCTTTGGTGGGAGAATTATGCCTAGATCCACTGATGAAAAACTAAAATATGTAGGTG 595
Query 599 GAGAGACGCATATTATTTCGATACGCAAGAATCTTTCGTGGGAAGAACTCAAGAAGAAGA 658
|||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 596 GAGAGACGCATATTATTTCGATCCGCAAGAACCTTTCATGGGAAGAACTCAAGAAGAAGA 655
Query 659 CCTCAGCTATATGCCAACAGTTGCATTCAATTAAGTATCAGCTTCCAGGAGATGAGCTTG 718
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 656 CCTCAGCTATATGCCAACAATTGCATTCAATTAAGTATCAGCTTCCAGGGGATGAGCTTG 715
Query 719 ACTCCTTGATATCAGTATCTTCGGATGAGGATCTTCAGAATATGATTGAAGAGTACAATG 778
||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 716 ACTCCCTAATATCGGTATCTTCGGATGAGGATCTTCAGAATATGATTGAAGAGTACAACG 775
Query 779 GACTTGAAAGGCTTGAAGGTTCACAACGGCCACGACTGTTCTTGATTCCTATTGGAGAGC 838
|||| |||||||| |||||||||||| |||| ||||||||| ||||||||||||| ||||
Sbjct 776 GACTAGAAAGGCTCGAAGGTTCACAAAGGCCGCGACTGTTCCTGATTCCTATTGGGGAGC 835
Query 839 CTGAAAGAAAGGCTCAGCAGAACATTCCTGATTGCCAATATGCTGCAGCTTTAAATTGTA 898
|||||| ||||| ||| ||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 836 CTGAAAAAAAGGTTCAACAGAACATTCCAGATTGCCAATATGCTACAGCTTTAAATTGTA 895
Query 899 ATGCTGATCCTAATCCTAGGAACATTTCTGATGGTCAGACTTTGGCTGGTGATTCACGTT 958
|||||||||||||||||||||||||| ||| | |||||||||||| ||||||| ||||||
Sbjct 896 ATGCTGATCCTAATCCTAGGAACATTGCTGGTAGTCAGACTTTGGTTGGTGATACACGTT 955
Query 959 ATCATATAAACAATTTGGATCGTAATCCAAGTTTCTGTAAACGAACACCGGGTCAGATGC 1018
|||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||
Sbjct 956 ATCATATAAACAATTTGGATCGAAATCCGAGTGTCTGTAAACGAACACCGGGTCAGATGC 1015
Query 1019 TTCGACTGGATGCTACTGCTATGCGTCCTAATCCACTTTTCAATGGAGTTCAGTATAACA 1078
| ||||||||| |||||||||||| || ||||||||||||||||||||||| |||||||
Sbjct 1016 TCCGACTGGATACTACTGCTATGCACCCGAATCCACTTTTCAATGGAGTTCAATATAACA 1075
Query 1079 TGGCTTCATATCCATCACCTCCTGTTTCTCCTTCACCATTCCAGCAAAGGGATTCAAATG 1138
|| |||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1076 TGTCTTCTTATCCATCACCTCCTGTTTCTCCTTCACCATTCCAGCATAGGGATTCAAGTG 1135
Query 1139 GTGCATACTCACAGTTCCATGGCAACAACTCCAGCTCGGAGAGCAATAATTCCTTCACTC 1198
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1136 GTGCATACTCACAGTTCCATGGAAACAACTCCAGCTCCGAGAGCAATAATTCCTTCACTC 1195
Query 1199 CAGCTCAACAAGACACGTCTATCTTCGAGGTGATTGATTCCAAATATCATCAACAGCGAC 1258
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 CAGTTCAACAAGACACGTCCATCTTCGAGGTGATTGATTCCAAATATCATCAACAGCGAC 1255
Query 1259 CACTACCTTCAGTTAACTATCAGTCTAACAAGCAGGAGGCAGAGAACCTATATGGGATTC 1318
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 CACTACCTTCAGTAAACTATCAGTCTAACAAGCAGGAGGCAGAGAACCTATATGGGATTC 1315
Query 1319 AGTTCCAGAA-TGGCTTTAATGACAAACCTGTGACTCCCAATCTTGGTCATGTTGATAAT 1377
|||||| || |||||| ||||| |||| |||||||||||||| |||||||||||||||
Sbjct 1316 TGTTCCA-AAGTGGCTTCAATGAAAAACTTGTGACTCCCAATCCCGGTCATGTTGATAAT 1374
Query 1378 CTTTGCTTTAACCCTGAGAGGTCTGCGAATAACGGAAGGGTCTTCTATGATAAAGTGAGC 1437
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1375 CTTTGCTTTAACCCTGAGAGGTCTGCGAATAACGGAAGGGTCTACTATGATAAAGTGAGT 1434
Query 1438 ATGCCCGAGGAATCTAAGGTTTCCTTCTCTGGGTCTACAAACTCAAATGATTCTTGCTTG 1497
|||||||||||||||||||||||||||||||| |||||||| |||||||| |||| ||||
Sbjct 1435 ATGCCCGAGGAATCTAAGGTTTCCTTCTCTGGTTCTACAAATTCAAATGACTCTTACTTG 1494
Query 1498 GGAATCCCACACTCGTACTCAGACTCTACATTGGAGATTACTGGTGGACACTCTAGCTAC 1557
|||||||| ||||||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct 1495 GGAATCCCGCACTCGTACTCAGACTCTACATTGGAGCTAAATGGTGGACACTCTAGCTAC 1554
Query 1558 TTTTCACAAGAGAGACAACAAAGCCCATCTTCAACATTGAACTTTACAAAGAAACAAACA 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 TTTTCACAAGAGAGACAACAAAGCCCATCTTCAACATTGAACTTTACAAAGAAACAAACA 1614
Query 1618 CAAGAAAAGCAAGTACAGGTGCATAGGAATAACGATCTAGCTGACCGTCGTACACAAAGC 1677
|||||||||| ||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1615 CAAGAAAAGCCAGTGCAGGTGCATAGGAATAATGATCTAGCTGACCGTCGTACGCAAAGT 1674
Query 1678 GATATACTCGACATGAAGTCCACTGAGGGAGGAGAGACTATGTTTAAATTTTCCCCAAGT 1737
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1675 GATATACTCGATATGAAGTCCACTGAGGGAGGAGAGACTATGTTTAAATTTTCCCCTAGT 1734
Query 1738 CCACGAGGACCTAGACTATCCGGTGAAAACAAGACGTTGCATATAGACATTTCTGCTGCA 1797
||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1735 CCAAGAGGACCAAGACTATCCGGTGAAAACAAGACATTGCATATAGACATTTCTGCTGCA 1794
Query 1798 GGCAATCATTATGATGAAATTTATCTAAATCAGGAAACCAAGAATCAAGGAGGGAATAGT 1857
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1795 GGCAATCATTATGATGAGATTTATCTAAATCAGGAAACCAAGAATCAAGGAGGGAACAGT 1854
Query 1858 GATACCATTTTTCATCTAGGAGGGAAAGTACT-GGGAACAAGAGCAATGCCTACTGACAT 1916
|| |||||||||||||||||||||||||| || |||| | ||||||| |||| || ||||
Sbjct 1855 GACACCATTTTTCATCTAGGAGGGAAAGTGCTAGGGA-CGAGAGCAACGCCTTCTAACAT 1913
Query 1917 GGAAGGCAAGAAGTTGCCTATATATGGAAACCAAACCTCAGTTGTTGTTGATCCATGGAA 1976
||| |||||| |||||||| || |||||||||||||||||| |||||||||||||||||
Sbjct 1914 GGACCGCAAGATGTTGCCTACATCTGGAAACCAAACCTCAGTGGTTGTTGATCCATGGAA 1973
Query 1977 GCAAATAAAGCAAGATAATGAGCGTTTGATGGCTGGAGCTGGAACTTCATCTGCTAATCT 2036
||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||
Sbjct 1974 GCAAATAAAGCAAGATAATGAGCGTTTGATGGCTGGAAC-----CTT-ATCTGCTAATCT 2027
Query 2037 AATTTCCTTAGAGGAAGGTATAGCAGCTAATACCCCTAATGAGGAACCTGAATCTCGTGC 2096
|||||| || |||||||| || ||||||||| |||| ||||| ||||| |||||||||||
Sbjct 2028 AATTTCTTTGGAGGAAGGCATTGCAGCTAATGCCCCAAATGAAGAACCAGAATCTCGTGC 2087
Query 2097 TGCCCGAGAAAGGAACT-TGGAAGTTTCAGGGATCTTTATAAGTAAGAGAGTAGTCTCTG 2155
|||||| |||||||| | |||||||||||||||||||| ||| |||||||| ||||||||
Sbjct 2088 TGCCCGGGAAAGGAA-TATGGAAGTTTCAGGGATCTTTTTAAATAAGAGAGCAGTCTCTG 2146
Query 2156 ATGAGAATTTCTTGTTCAGCATCGCCTCTGAATCACCAAACAGCAAGATTGTTCATGAGA 2215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 ATGAGAATTTCTTGTTCAGCATCGCCTCTGAATCACCAAACAGCAAGATTGTTCATGAGA 2206
Query 2216 CA---C------AA----A---AG-A-ATA-GAACAGAA-AGA--G--AAGGTGGTTTAG 2251
|| | || | | | | | ||| |||| ||| | ||| ||||||||
Sbjct 2207 CAGGGCGCTTGGAACTTGATTCAACACAAAAGAATAGAACAGAAAGGGAAGATGGTTTAG 2266
Query 2252 GCCATGTGAGAATCCCAATCATGGATTTGAATCAGCCAGCGCCAGCAACAGCGAGTGAAA 2311
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2267 GCCATGTGAGAATCCCAAGCATGGATTTGAATCAGCCAGCGCCAGCAACAGCGAGTGAAA 2326
Query 2312 CTTACAGTTTGAAGACACCAAGAGAAGACTCACCACAAAGCATTCCACATGCAAAGATTA 2371
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
Sbjct 2327 CTTACAGTTTGAAGACACCAAGAGAAGATTCACCACAAAGCATTCCACACACAAAGATGA 2386
Query 2372 CCAGCGGTGATACAATATTCCTTTCTGAGGAAGCTGAAGCCAATACCGGCCAGAAAGAGA 2431
||| ||||||||||||||||||||||||||||||||||| |||| |||| |||| ||||
Sbjct 2387 ACAGTGGTGATACAATATTCCTTTCTGAGGAAGCTGAAGCTAATATCGGCGAGAAGGAGA 2446
Query 2432 ACAGTTTCAAAGACACACTCTTTGTTGAAATGGAAGCCAGTGTTTATGGCTTGCAGATAA 2491
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2447 ACAGTTTCAAAGACGCACGCTTTGTTGAAATGGAAGCCAGTGTTTATGGCTTGCAGATAA 2506
Query 2492 TAAAGAACGCTGATCTTGAAGACCTGACAGAACTGGGATCCGGGACATATGGAACTGTCT 2551
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 2507 TAAAGAACGCTGATCTTGAAGACCTAACAGAACTGGGATCCGGGACATATGAAACTGTCT 2566
Query 2552 ATCATGGAACATGGCGGGGAACGGATGTTGCTATAAAGAGAATACGGAACAGTTGCTTTG 2611
|||||||||||||||||||||||||||||||||||||||||||| | ||||| || ||||
Sbjct 2567 ATCATGGAACATGGCGGGGAACGGATGTTGCTATAAAGAGAATAAGAAACAGCTGTTTTG 2626
Query 2612 CAGGGAGATCATCTGAACAAGAACGCTTGACGAAAGATTTCTGGAGGGAAGCACAAATAC 2671
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2627 CGGGGAGATCATCTGAACAAGAACGCTTGACGAAAGATTTCTGGAGGGAAGCACAAATAC 2686
Query 2672 TCTCAAATCTTCATCACCCAAACGTTGTTGCATTCTACGGTATAGTGCCTGATGGAACTG 2731
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2687 TCTCAAATCTTCATCACCCAAATGTTGTTGCATTCTACGGTATAGTGCCTGATGGAACTG 2746
Query 2732 GAGGAACCTTGGCAACTGTTACAGAGTTCATGGTGAATGGGTCACTCAGGCATGCTCTTC 2791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2747 GAGGAACCTTGGCAACTGTTACAGAGTTCATGGTGAATGGGTCACTCAGGCATGCTCTTC 2806
Query 2792 TCAAAAAGGACAGATTGCTTGACACTCGGAAAAAGATAATAATTGCAATGGATGCTGCTT 2851
||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 2807 TCAAAAAGGACAGGTTGCTTGACACTCGAAAAAAGATAATAATTGCCATGGATGCTGCTT 2866
Query 2852 TTGGCATGGAGTATTTGCACTCGAAGAACATCGTCCACTTTGATCTCAAATGCGAAAACT 2911
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2867 TTGGCATGGAGTATTTGCACTCGAAGAACATTGTCCACTTTGATCTCAAATGCGAAAACT 2926
Query 2912 TACTTGTCAATTTAAGGGATCCACAACGGCCTATATGCAAGGTGGGAGATCTTGGCTTAT 2971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2927 TACTTGTCAATTTAAGGGATCCACAACGGCCTATATGCAAGGTGGGAGATCTTGGCTTAT 2986
Query 2972 CTAGAATCAAACGTAACACTTTAGTATCTGGGGGAGTGAGAGGAACTCTTCCATGGATGG 3031
||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 2987 CTAGAATAAAACGTAACACTTTAGTATCTGGGGGAGTGCGAGGAACACTTCCATGGATGG 3046
Query 3032 CCCCAGAACTCTTGAACGGAAGCAGCACCCGAGTTTCTGAGAAAGTTGATGTTTTTTCAT 3091
||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||
Sbjct 3047 CCCCAGAACTCTTGAACGGAAGCAGCACCCGGGTTTCTGAGAAAGTCGATGTTTTCTCAT 3106
Query 3092 ATGGAATCTCGCTGTGGGAGATTCTAACCGGAGAGGAACCCTATGCAGATATGCATTGTG 3151
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 3107 ATGGAATCTCACTGTGGGAGATTCTAACCGGAGAGGAACCTTATGCAGATATGCATTGTG 3166
Query 3152 GAGCAATCATTGGCGGGATCGTGAAGAACACACTTCGACCTCCTATACCAAAAAGCTGTT 3211
||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 3167 GAGCAATCATTGGCGGGATCGTGAAGAACACCCTTCGACCTCCCATACCGAAAAGCTGTT 3226
Query 3212 CTCCGGAATGGAAAAAGCTGATGGAACAATGCTGGTCTGTCGACCCGGATTCTCGTCCTC 3271
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 3227 CTCCGGAATGGAAAAAGCTGATGGAACAATGCTGGTCTGTAGACCCGGATTCCCGTCCTC 3286
Query 3272 CATTCACCGAAATAACATGCCGACTTCGGTCCATGTCAATGGAAGTCGTCACTAAAAGCA 3331
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 3287 CATTCACCGAAATAACATGCCGACTTCGGTCCATGTCAATGGAAATCGTCAGTAAAAGCA 3346
Query 3332 AAAGAAGAGAAAATAAACCCTGA 3354
|||||||||| ||||||||||||
Sbjct 3347 AAAGAAGAGATAATAAACCCTGA 3369
> Ahg477126 jgi|Araly1|477126|fgenesh2_kg.2__2256__AT1G79570.1
Length=4196
Score = 350 bits (189), Expect = 5e-95
Identities = 556/729 (76%), Gaps = 42/729 (6%)
Strand=Plus/Plus
Query 2478 TGGCTTGCAGATAATAAAGAACGCTGATCTTGAAGACCTGACA-GAACTGGGATCCGGGA 2536
||| |||||||| || ||||| | |||||||| || ||| | || || || || || |
Sbjct 3100 TGGTTTGCAGATCATTAAGAATGAAGATCTTGAGGAGTTGA-AGGAGCTTGGTTCTGGTA 3158
Query 2537 CATATGGAACTGTCTATCAT-GGAACATGGCGGGGAACGGATGTTGCTATAAAGAGAATA 2595
| | |||||| || |||||| |||| |||| | ||| | || || ||||| ||||| |||
Sbjct 3159 CTTTTGGAACGGTGTATCATGGGAA-ATGGAGAGGATCAGACGTCGCTATCAAGAGGATA 3217
Query 2596 CGGAACAGTTGCTTTGCAGGGAGATCATCTGAACAAGA-ACGCTTGAC-GAAAGATTTCT 2653
||| ||||||||||| ||| | ||||| || ||||| | | ||||| | || ||||
Sbjct 3218 AAGAAGAGTTGCTTTGCTGGGCGGTCATCAGAGCAAGAGA-GATTGACTG-GTGAATTCT 3275
Query 2654 GGAGGGAAGCACAAATACTCTCAAATCTTCATCACCCAAACGTTGTTGCATTCTACGGTA 2713
|| ||||||| |||| || ||||| |||||||| || |||||||| ||||| || |||
Sbjct 3276 GGGGGGAAGCTGAAATTCTTTCAAAGCTTCATCATCCGAACGTTGTAGCATTTTATGGTG 3335
Query 2714 TAGTGCCTGATGGAACTGGAGGAACCTTGGCAACTGTTACAGAGTTCATGG-TGAATGGG 2772
| || || || ||||||| |||||||| ||||| ||||||| ||||| || ||||
Sbjct 3336 TTGTAAAAGACGGGCCTGGAGGGACCTTGGCGACTGTGACAGAGTACATGGTTG-ATGGT 3394
Query 2773 TCACTCAGGCATGCTCTTCTCAAAAAGGACA-G-ATTGCTTGACAC-TCGGAAAAAGA-T 2828
|| || ||||||| ||| || ||||||| | | | ||||| | || | || ||| |
Sbjct 3395 TCTCTGAGGCATGTTCTGGTCCGGAAGGACAGGCA-T-CTTGA-TCGTC-GTAAGAGACT 3450
Query 2829 AATAATTGCAATGGATGCTGCTTTTGGCATGGAGTATTTGCACTCGAAGAACATC-GTCC 2887
||| ||||| ||||||||||| ||||| ||||| ||||| ||||| || |||| | || |
Sbjct 3451 AATCATTGCCATGGATGCTGCATTTGGAATGGAATATTTACACTCCAAAAACA-CTGTTC 3509
Query 2888 ACTTTGATCTCAAATGCGAAAACTTACTTGTCAA-TTTAAGGGATCC-ACAACGGCCTAT 2945
|||| ||| | ||||| || || |||||||| || || || ||||| | || || ||
Sbjct 3510 ACTTCGATTTGAAATGTGACAATTTACTTGTGAACTTGAA-AGATCCTTC-TCGCCCAAT 3567
Query 2946 ATGCAAGGTGGGAGATC-TTGGCTTATCTAGAATCAA-ACGTAACACTTTAGTATCTGGG 3003
|||||||| || || | |||| || || | |||||| | | || || || ||||||||
Sbjct 3568 CTGCAAGGTTGGTGA-CTTTGGTTTGTCAAAAATCAAGA-GAAATACGTTGGTATCTGGT 3625
Query 3004 GGAGTGA-GAGGAACTCTT-CCATGGATGGCCCCAGAAC-TCTTGAACGGAAGCAGCACC 3060
|| || | | ||||| ||| ||||||||||| ||||| | || | ||||| ||||||| |
Sbjct 3626 GGTGT-ACGTGGAAC-CTTACCATGGATGGCACCAGAGCTTC-TAAACGGGAGCAGCAGC 3682
Query 3061 CGAGTTTCTGAGAAA-GTTGATGTTTTTTCATAT-GGAATC-TCGCTGTGGGAGATTCTA 3117
||||||||| ||| ||||||||||| || | | || ||| | ||||||||||||||
Sbjct 3683 AAAGTTTCTGA-AAAGGTTGATGTTTTCTC-TTTCGGTATCGT-TTTGTGGGAGATTCTA 3739
Query 3118 ACCGGAGAGGAACCCTATGCAGA-TATGCATTGTGGAGCAATCATTGGCGGGATCGTGAA 3176
|||||||||||||| ||||| || |||||| | ||| ||||| || || ||||| |||||
Sbjct 3740 ACCGGAGAGGAACCATATGC-GAATATGCACTATGGGGCAATAATAGGTGGGATAGTGAA 3798
Query 3177 GAACACACT 3185
||||||||
Sbjct 3799 CAACACACT 3807
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 126617545371
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5