BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24730.1
Length=626
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479992 jgi|Araly1|479992|fgenesh2_kg.3__2693__AT3G24730.1 841 0.0
> Ahg479992 jgi|Araly1|479992|fgenesh2_kg.3__2693__AT3G24730.1
Length=585
Score = 841 bits (455), Expect = 0.0
Identities = 554/599 (92%), Gaps = 17/599 (3%)
Strand=Plus/Plus
Query 25 ATGAGTTATCTTCTGAAGACGTTAACGACGAAGGAAGAGATTGATCGGGTTATCAGAGAC 84
|||||||||||| ||||| ||||||||| ||||||||||||||||||| | |||||||||
Sbjct 1 ATGAGTTATCTTTTGAAGGCGTTAACGAAGAAGGAAGAGATTGATCGGATCATCAGAGAC 60
Query 85 ACCATTGATGAAGTTCTTGTTTTACGATTTGGTCGTTCCTCCGACGCCGTTTGTCTTCAG 144
||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||
Sbjct 61 ACCATTGATGAAGTTCTTGTTTTACGATTTGGTCGTTGCTCTGACGACGTTTGTCTTCAG 120
Query 145 CATGATGAAATCCTTGCGAAATCGGTGAGAGATGTTTCGAAATTTGCTAAGGTAGCTTTG 204
||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 CATGACGAAATTCTTGCGAAATCGGTGAGAGATGTTTCGAAATTCGCTAAGGTAGCTTTG 180
Query 205 GTTGATGTTGATTCAGAGGATGTTCAAGTGTATGTGAAGTATTTTGATATCACGTTGTTT 264
|||||||||||||||||||| |||||||||||||||||||||||||| || || ||||||
Sbjct 181 GTTGATGTTGATTCAGAGGAAGTTCAAGTGTATGTGAAGTATTTTGACATTACTTTGTTT 240
Query 265 CCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGGAACTGCGGAT 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCTTCGACGATCTTCTTCTTCAATGCGCATCATATGAAATTGGATTCTGGAACTGCGGAT 300
Query 325 CATACTAAATGGGTTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAGGCT 384
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CATACTAAATGGATTGGTGCATTTCATATAAAACAAGACTTTATTGATGTTGTTGAGGCA 360
Query 385 ATATATCGAGGAGCAATGAAAGGGAAGATGATTGTTCAATGTCCAATACCGCCAGAGAGG 444
|||||||||||||| ||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 361 ATATATCGAGGAGCGATGAAAGGGAAGATGATTGTTCAATGTCCGATTCCGCCGGAGAGA 420
Query 445 ATACCAAAGTACCAGCTCGTGTACAAGGATGTGTAGACA-CTAAAGTTTGTTGTGCTTAC 503
||||||||||| || ||| |||||||||||||||||| | ||||| || ||
Sbjct 421 ATACCAAAGTATCAACTCTTGTACAAGGATGTGTAGA-AGCTAAA-TT----------AC 468
Query 504 AATGCAAAATCTGTTTCTCAT-CTTCTGTGTTGGCAATAATATTTACATTTGACATTTTG 562
||||||||||||||||||||| ||| | ||||||||||||||||||||| |||||||||
Sbjct 469 AATGCAAAATCTGTTTCTCATTCTTTTA-GTTGGCAATAATATTTACATT-GACATTTTG 526
Query 563 AGATTTACAGTTATGTTTTTGTACAA-AGTTGAAGAATGAGAATAAATATGCAGATTTT 620
||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 527 AGATTTACATTTATGTTTTTGTACAACAGTTGAAGAATGAGAATAAATATGCAGATTTT 585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22911873117
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5