BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24740.1
Length=1734
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479993 jgi|Araly1|479993|fgenesh2_kg.3__2694__AT3G24740.1 2425 0.0
> Ahg479993 jgi|Araly1|479993|fgenesh2_kg.3__2694__AT3G24740.1
Length=1656
Score = 2425 bits (1313), Expect = 0.0
Identities = 1553/1666 (93%), Gaps = 28/1666 (2%)
Strand=Plus/Plus
Query 32 GAGAAATCAAAATCATCGATTCTCCTTTGTTTCGCCTAACCCAATTCCTAAATCTCAGCA 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGAAATCAAAATCATCGATTCTCCTTTGTTTCGCCTAACCCAATTCCTAAATCTCAGCA 60
Query 92 TCTTTCATCAATCCAATCTCTCAAATAAGCG--AGAGAGAAACAAAGATTATCGAATCCT 149
|||||||||||||||||||||||||| |||| |||||||||||||||| ||| ||||||
Sbjct 61 TCTTTCATCAATCCAATCTCTCAAAT-AGCGAAAGAGAGAAACAAAGATCATCCAATCCT 119
Query 150 TGGAGACGAAAACATACTCCAATTTGTTTTAGGACATTTGGGTTACCCTGAGGCTTAAGG 209
|||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 120 TGGAGACGAACACATACTCCAATTTGTTTTAGGACATTTGGGTTGCCCTCTGGCTTAA-- 177
Query 210 AGAATAGTGGTTTAGTTATTTATACTGAATTTTGTGTCATTCAGACTT-TCCGAGGATTT 268
|||||||||||||||||||||| |||||||| ||||||||| || || || |||||||
Sbjct 178 CGAATAGTGGTTTAGTTATTTATGCTGAATTTGGTGTCATTCGGA-TTCTCAGAGGATTA 236
Query 269 TCTGTTTGGTACCGTTTGCCTCGTCT-GTGTTTTCATTTGAGCTGCATCTTAAAG-TGAA 326
|||||||||||| ||||| |||| | |||||||||||||| |||||| |||||| | |
Sbjct 237 TCTGTTTGGTACTGTTTGGTTCGT-TGGTGTTTTCATTTGATCTGCATTTTAAAGTTTTA 295
Query 327 AGTTCAGTGCTTAAACAGTAATAAAGTAGTA-TTTCAACAGGCTGCTAATAAGATTGCTC 385
|| || | ||| ||| ||||| ||||||| | |||||| |||||||||||||||||||||
Sbjct 296 AGCTCGGCGCTGAAATAGTAAGAAAGTAG-ATTTTCAAAAGGCTGCTAATAAGATTGCTC 354
Query 386 CCTTTCGCTTACACAGTGCTTAACAAGATGGCTGGTGTAAAGCGAAAATTAAGTACCGAG 445
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 CCTTTCGCTTACTCAGTGCTTAACAAGATGGCTGGTGTAAAGCGAAAATTAAGTACCGAG 414
Query 446 TCAGATGTTCATGCTCTTCACAAAGAACTGGATGAGGTTTCATGTCCTGTTTGCATGGAT 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 TCAGATGTTCATGCTCTTCACAAAGAACTGGATGAGGTTTCATGTCCTGTTTGCATGGAT 474
Query 506 CACCCACATAATGCTGTTCTACTGCTGTGCAGCTCTCATGACAAAGGTTGCAGGTCCTAC 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 CACCCACATAATGCTGTTCTACTGCTGTGCAGCTCTCATGACAAAGGTTGCAGGTCCTAC 534
Query 566 ATCTGTGATACCAGTTACCGACATTCCAATTGCCTTGACCGGTTTAAGAAATTGCATTCT 625
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 535 ATCTGTGATACCAGTTACCGACATTCCAATTGCCTCGACCGGTTTAAGAAATTGCATTCT 594
Query 626 GAATCCGCAAATGACCCTACTCCCGAGGCGAACTTGGCTTCAAGGGAACATAATAACGAA 685
|||||| | ||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 595 GAATCCCCTAATGACCCTACTCCCGAGGGGAACTTGGCTTCAAGGGAAAATAATAACGAA 654
Query 686 TCTCTATACGAGCATGGTACAGCCAGTCGAAGCAGTTTTCACCGTGAGTCTGGAAACCGA 745
|||||| ||||||||||||||||||||||||||||||||| || |||||| |||||||
Sbjct 655 TCTCTAAACGAGCATGGTACAGCCAGTCGAAGCAGTTTTCTTCGGGAGTCTACAAACCGA 714
Query 746 GGCTCTTCTTGGGATTCCGAATCACTGAGGAGGAGGAGGAGAGTTGAGGAAGAAGTTG-A 804
|||||| |||||||||||||||| |||||||||||||||||||| || ||||||| | |
Sbjct 715 GGCTCTGCTTGGGATTCCGAATCGCTGAGGAGGAGGAGGAGAGTGGATGAAGAAGA-GCA 773
Query 805 GTCAGAAGATATCACAAATTTGAAATGTCCTCTATGCCGGGGTACTGTTTTAGGATGGAA 864
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 774 GTCAGAAGATATCACAAATTTGAAATGTCCTCTTTGCCGGGGTACTGTTTTAGGATGGAA 833
Query 865 GGTTGTAGAAGAAGTAAGAACGTATCTTGATCATAAGAACCGAAGTTGCTCCCGAGAATC 924
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 834 GGTTGTAGAAGAAGTAAGAACATATCTTGATCTTAAGAACCGAAGTTGCTCCCGAGAATC 893
Query 925 CTGCTCATTTACTGGCAACTACCAGGATCTGCGCCGCCATGCCAGGAGGACTCACCCAAC 984
||| ||||||||||| |||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 894 CTGTTCATTTACTGGAAACTACCAGGATCTGCGCCGTCATGCCAGAAGGACACACCCAAC 953
Query 985 AACTCGTCCTTCAGACACTGATCCATCAAGAGAGAGAGCTTGGAGGCGGCTTGAGAACCA 1044
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 954 AACTCGTCCTTCAGATACTGATCCATCAAGAGAGAGAGCTTGGAGGCATCTTGAGAACCA 1013
Query 1045 GAGGGAGTATGGAGATATAGTCAGTGCAATCCGTTCTGCCATGCCCGGTGCTGTTGTAGT 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 GAGGGAGTATGGAGATATAGTCAGTGCAATCCGTTCTGCCATGCCCGGTGCTGTTGTAGT 1073
Query 1105 AGGAGATTATGTTATAGAAAACGGAGATAGGTT-TGCAGGTGAGAGGGAAACGGGAAATG 1163
||| || |||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1074 AGGGGACTATGTTATAGAAAACGGAGATAGGTTCT-CAGGTGAGAGGGAAACGGGAAATG 1132
Query 1164 GTGGGAGCGACCTTTGGACCACTTTACTATTGTTTCAGATGATTGGCTCTCTTGACAATG 1223
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1133 GTGGGAGCGACCTTTGGACCACTTTAGTATTGTTTCAGATGATTGGTTCTCTTGACAATG 1192
Query 1224 GAGGTTCTAGCGCTAGTGGGAGTGGTGGTGGATCAAGATCCCACAGGTCAAGGGCATGGA 1283
||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 1193 GAGGTTCTAGCGCTAGTGGCAGTGGTGGCGGTTCAAGATCCCACAGGTCAAGGGCATGGA 1252
Query 1284 GGAATCATCGGCGTTCATCTTCAGATAGGCCG-TACCTTTGGGGGGAGAATCTATTGGGT 1342
|||||||||| ||||| ||||||||||| | | ||||||||||||||||||||||| |||
Sbjct 1253 GGAATCATCGACGTTCGTCTTCAGATAGAC-GATACCTTTGGGGGGAGAATCTATTAGGT 1311
Query 1343 CTACAAGATGAGCGCAATAACAACGATGATGAAGAGTTTCGTTTGCAGAATGATGCAGGC 1402
|||||||| || | |||||||||||||||||||||||| | | ||||||| |||||||||
Sbjct 1312 CTACAAGAAGAACACAATAACAACGATGATGAAGAGTTGCATATGCAGAACGATGCAGGC 1371
Query 1403 GGTGCTTCTACTCCTGTTCCAAGAAGAAGAAGGAGATTTGGACGTCCTAGATCAAGCGGA 1462
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 1372 GGTGCTTCTACTCCTGTTCCAAGAAGAAGACGGAGATTCGGACGTCCTAGATCAAGCGGA 1431
Query 1463 AATCATCCGCGATAAGCTGAAGCGTCC-CGGTGATATCGATATCTCTCGGGTCAGAACCA 1521
||||||||||||||| | ||| | ||| || || ||||||||||||||||||||||||||
Sbjct 1432 AATCATCCGCGATAAACCGAATCATCCGCG-TGCTATCGATATCTCTCGGGTCAGAACCA 1490
Query 1522 GGCCGATGCAAAGGGAAAGGTTTTACTAAAAACCCGAGAGGCTTAGGATTGTTTGGT-TT 1580
|||||||||||||||||||||||| || |||||||||||| |||||||||||||||| ||
Sbjct 1491 GGCCGATGCAAAGGGAAAGGTTTTGCTGAAAACCCGAGAGCCTTAGGATTGTTTGGTGTT 1550
Query 1581 TATGTAAATGTCATTTTGAGCCT--T---G--GCTCATTGTATACTACTAAGTATGGCTT 1633
||||||||||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct 1551 TATGTAAATGTCATTTTGAGCCTCGTTAAGTCGCTCATTGTATACTACTAAGTATGGCTT 1610
Query 1634 CTTATGCAATGTCTTTTGTTACTTAACTCGTGGATTATTTTCTTTT 1679
|||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1611 TTTATGCAATGTCTTCTGTTAATTAACTCGTGGATTATTTTCTTTT 1656
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65058138460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5