BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24750.1
Length=970
Score E
Sequences producing significant alignments: (Bits) Value
Ahg342651 jgi|Araly1|342651|fgenesh1_pg.C_scaffold_3002414 1234 0.0
> Ahg342651 jgi|Araly1|342651|fgenesh1_pg.C_scaffold_3002414
Length=771
Score = 1234 bits (668), Expect = 0.0
Identities = 733/765 (96%), Gaps = 2/765 (0%)
Strand=Plus/Plus
Query 5 AGATCTTTCAATGGCTCTTCAAGTTAGGGAGATCAGAGCCTAGTTCCATCAATTGTACTG 64
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 5 AGATCTTTCAATGGCTCTTCAAGTTAGGGAGATCAGAGCCCAGTTCAATCAATTGTACTG 64
Query 65 ATCATGAACCCACCACAACTCTAACAAATTGTAAAGATCACAGAACAAGAAGATCATCTA 124
||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||
Sbjct 65 ATCATGAACCCACCACAACTCTAACAAATTGCACAGTTCACAGAACAAGAAGATCATCTA 124
Query 125 CAAGAGGTTCTAAACATAAAGACCAAAGGAGCTATAGAGGAATCTGGTTATGGTGTAGAA 184
||||||| |||||||||||| |||| ||||| ||||||||||||||||||||||||||||
Sbjct 125 CAAGAGGGTCTAAACATAAAAACCAGAGGAGTTATAGAGGAATCTGGTTATGGTGTAGAA 184
Query 185 AAGACGTAGCCAAGGCTTGTTTCTCTAGCACTTTTACTTTAAGAAGACTTAATAGCTTTA 244
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 185 AAGACGTAGCCAAGGCTTGTTTCTCTAGCACACTGACTTTAAGAAGACTTAATAGCTTTA 244
Query 245 GGAGAGGGCATTTGCTTCGCTCCATGGCAAAGATAAAAGCGCAAGGAGGAGAAGAACAAG 304
||||||| ||||| ||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 245 GGAGAGGACATTTACTTGGCTCCATGGCAAAGATAAAAGCACAAGGAGGAGAAGAACAAG 304
Query 305 TGACATCGACAAGGTTTGATCTGAAAAAGGCTATAAGAGTCTTGC-AACCGGAGAAACAA 363
|||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||
Sbjct 305 TGACATCGACAAGGTTTGATCTGAAAAAGGCTATAAAAGTCTT-CAAACCGGAGAAACAA 363
Query 364 GACGATACCAATAAAGAGAAGTCGAAAAGCGAGCAGAGCAAAGGTAAGGCCACACTTTCA 423
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 364 GACGAAACCAATAAAGAGAAGTCGAAAAGCGAGCAGAGCAAAGGTAAGGCCACACTTTTA 423
Query 424 AGAATGAAGGAGCTTATCAAATGGGCTGCAGCAGCCAAATCCGACAAAGCTGTCAAATTC 483
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 424 AGAATGAAGGAGCTCATCAAATGGGCTGCAGCAGCCAAATCCGACAAAGCGGTCAAATTC 483
Query 484 TTTACCCCTAAGATAATGATGGAGTTGAAAAACCGAAGAAAGTTGAAGATGATGAGAGAA 543
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 484 TTTACCCCTAAGATAATGATGGAGTTGAGAAACCGAAGAAAGTTGAAGATGATGAGAGAG 543
Query 544 GTCAATGAAGAAGAATCAACAAAAAGGATGAGTAGTGTATCTGCAAATATAAGTTTGAGA 603
|| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 544 GTGAATGAAGAAGAATCAACTAAAAGAATGAGTAGTGTATCTGCAAATATAAGTTTGAGA 603
Query 604 TGGGAGAGTAGTGAGAGTTGCACAACAAACTCTTCCTCTGATCACATCTCTATAGTTTCT 663
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 604 TGGGAGAGTAGTGAGAGTTGCACAACAATCTCTTCCTCTGATCACATCTCTATAGTTTCT 663
Query 664 TCACCAGGAATCCTTGTTTCCTTGAGTCCTACGCCACTCTACCGATGTAGATCCAGGAAA 723
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 664 TCACCAGCAATCCTTGTTTCCTTGAGTCCTACGCCACTCCACCGATGTAGATCCAGGAAA 723
Query 724 TGCAACTGGATCACTACTGATTCTGAATTTGTGGTGTTAGAGTTA 768
| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 TACAACTGGATCACTACTGATTCTGAATTTGTGGTGTTAGAGTTA 768
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36026156565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5