BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G24760.1
Length=1444
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479995 jgi|Araly1|479995|fgenesh2_kg.3__2696__AT3G24760.1 2001 0.0
> Ahg479995 jgi|Araly1|479995|fgenesh2_kg.3__2696__AT3G24760.1
Length=1413
Score = 2001 bits (1083), Expect = 0.0
Identities = 1328/1440 (92%), Gaps = 41/1440 (3%)
Strand=Plus/Plus
Query 17 aaaaaTGTCAGACAACAATCCAGAAATCGAATCATCAACCTTCAACAATCTAAA-CATCG 75
||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||
Sbjct 1 AAAAATGTCAGACAACAATCCAGAAATCGAATCATCAACCTTCAACACTCTAAACCA-CG 59
Query 76 ACGTCACAGAATCAATCCTCTATCATCTCCCAATCCCTTCCTTAGTCCGTTTCACTCTCG 135
||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 60 ACGTCACTGAATCAATCCTCTCCCACCTCCCAATCCCTTCCTTAGTCCGTTTCACTCTCG 119
Query 136 TCTCCAAACAATGGCGTT-CActcatcacctctcttcctccttctccttctccttc-tcc 193
|||||||||||||||||| || | ||||||||||||||||||||||||||||| || | |
Sbjct 120 TCTCCAAACAATGGCGTTCCA-TAATCACCTCTCTTCCTCCTTCTCCTTCTCCATCGT-C 177
Query 194 atcatcaccaccatggctcttcctcttcGGTATCCACAACACTTCCTCTTTCCACAACCA 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 ATCATCACCACCATGGCTCTTCCTCTTCGGTATCCACAACACTTCCTCTTTCCACAACCA 237
Query 254 ATCCTTCGCTTTCGAtcctctctccaacacctggctccgtctccctccttcctcctcttc 313
|||||||||||||||||||||||||||| | ||||| || |||||||||||||| || ||
Sbjct 238 ATCCTTCGCTTTCGATCCTCTCTCCAACTCTTGGCTTCGCCTCCCTCCTTCCTCTTCCTC 297
Query 314 ctccGATCATCTCGTCGGATCTAATCGCTTCCTCTTCACCACCGCTCCTCGCTTCTCCTT 373
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 298 CTCCGATCACCTCGTCGGATCTAATCGCTTCCTCTTCACCACCGCTCCTCGATTCTCCTT 357
Query 374 CTCACCAATCCTTAAACCTAATTGGCGATTCACTTCCCCTGTTC-GATTTCCTCGAATCA 432
|||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 358 CTCACCGATCCTTAAACCTAATTGGCGATTCACTTCCCCTGTTCTG-TTTCCTCGAATCA 416
Query 433 ATCCTCTCTTAACCGTTTTCACAACTCTATCTAACTCATCCAAACTAATCCTCGTCGGTG 492
|||||||||||| ||||||||||||||| |||||||| || || ||||||||||| ||||
Sbjct 417 ATCCTCTCTTAAGCGTTTTCACAACTCTCTCTAACTCCTCTAAGCTAATCCTCGTTGGTG 476
Query 493 GATCTTCGCGTATCGGCGGATTAGTCGATATCGAAGAACGATTAGCTGTTCAAATCTACG 552
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| | ||||
Sbjct 477 GATCTTCGCGTATCGGCGGATTAGTCGATATCGAGGAACGGTTAGCTGTTCAGGTTTACG 536
Query 553 ATCCTGTTCTCGATTCATGGGAGCTTTGTTCACCACTCCCTGCTGATTTCAGATCTGGTC 612
|||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 537 ATCCTGTTCTTGATTCATGGGAGCTTTGTTCACCACTTCCTGCTGATTTTAGATCTGGTC 596
Query 613 AGGATCATCAAACTTTGACCTCAGCTTTGTTTAAGAGAAGATTCTATGTTTTCGATAACT 672
| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 597 AAGATCATCAAACTTTGACTTCAGCTTTGTTTAAGAGAAGATTCTACGTTTTCGATAACT 656
Query 673 ATTCGTGTTTTATCTCGTCGTTTTGCTTGGATTCATATACATGGAGTGATGTTCAAACTC 732
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 657 ATTCGTATTTTATCTCGTCGTTTTGCTTGGATTCTTATACATGGAGTGATGTTCAAACGC 716
Query 733 TTAAACCACCAGGACTCTCGTTTGC-TTACTTGAATTCTTGTAATGGTATGCTTGTTCTT 791
|||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 717 TTAAACCACCTGGACTCTCGTTTGCGTT-CTTGAATTCTTGTAATGGTATGCTTGTTCTT 775
Query 792 GGTGGAATGTGTGGGTTCTCGTTTAATCTTTGGAGTATTGAAGAAGGCTCGATGGAATTT 851
||||||||||| ||||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 776 GGTGGAATGTGCGGGTTTTCGTTTAATCTTTGGAGTATCGAAGAAGGTTCGATGGAATTT 835
Query 852 AGCGAAATCGCGGTTATGCCTGAGGATTTGTTGTTTGGATTAGTTGATAGTGATGATGAG 911
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 836 AGCGAAATCGCGGTTATGCCTGAGGATTTGTTGTTTGGATTAGTTGATAATGAAGATGAG 895
Query 912 GATGACAAGTTTAGGAGTTTGAAATGTGCTGGCTCTGGGAATCTTGTTTATGTGTTTAAT 971
|| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 896 GAGGATAAGTTTAGGAGTTTGAAATGTGTTGGCTCTGGGAATCTTGTTTATGTGTTTAAC 955
Query 972 GATGATTGTCATAAGAAATTTCCAGCTTGTGTTTGTGAGATTGGTGGTGGTGAGAATGGG 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 GATGATTGTCATAAGAAATTTCCAGCTTGTGTTTGTGAGATTGGTGGTGGTGAGAATGGG 1015
Query 1032 ATATGTAGTTGGAGAAGAGTTCCTTGTTTGCCTTCTCCGGTTAATAAGTTTCATAAAGTT 1091
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 AAATGTAGTTGGAGAAGAGTTCCTTGTTTGCCTTCTCCGGTTAATAAGTTTCATAAAGTT 1075
Query 1092 GTTAGTTTCTGCTCAACGGTGTCTATTACCGATGTTTTCCACCCCGAGGAAGCTCGGATT 1151
|||||||||||||||||||| ||||||| ||||||||| | ||||||||| |||| ||||
Sbjct 1076 GTTAGTTTCTGCTCAACGGTATCTATTAGCGATGTTTTTCGCCCCGAGGATGCTCAGATT 1135
Query 1152 GGCGGTTCGATCCGTGGTTGAGTTTGCTTAGTGCTAATGTAAAGTGGAGATGAAGGGAGA 1211
|| | | || | ||||||||||| || ||||||||||||||||||||||||||
Sbjct 1136 GG---T--G----GT--T-GAGTTTGCTTACTGATAATGTAAAGTGGAGATGAAGGGAGA 1183
Query 1212 AGATTTAATAATGAAGTGTATAAAAATGGTTATCAATTTATTATGGTAATCATGTAATTA 1271
|||| |||||||||||||||||| || ||||||||||||| |||||||| | ||
Sbjct 1184 AGATA-AATAATGAAGTGTATAAAGATTGTTATCAATTTATCATGGTAATTAGGT----- 1237
Query 1272 GACGTAAACTGGTTTATAATTCTTCGTT-----GTATGAATCATTTACATACATACACAT 1326
| |||||||| ||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 1238 G---TAAACTGGGTTATAATTCTTCGTTTAAATGTATGAATCATTTACGTACATACACAT 1294
Query 1327 ATCTACAGAATCATTAAGTATTGTTG-TTTGTT--TATAAATGAGTGTGTTTTCACAATC 1383
||||| ||||||||||||||||||| ||| || ||||| |||||||||||||||||||
Sbjct 1295 GTCTACTGAATCATTAAGTATTGTTGATTTTTTGGTATAAGTGAGTGTGTTTTCACAATC 1354
Query 1384 TCTTATACCAAAGCA-AGCTAACATTTATACGTTCTAATGAATTCTATTAAGTATTGTTG 1442
|||| |||||||||| | |||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1355 TCTTGTACCAAAGCATA-CTAACATTGATACGTTCTAATGAATTATATTAAGTATTGTTG 1413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54011967410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5